View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6975_low_42 (Length: 231)
Name: NF6975_low_42
Description: NF6975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6975_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 37157948 - 37157727
Alignment:
| Q |
1 |
agagaaaaacctctgcttataaagaggccgcatcgtggcatgaaattttcggttcaaacaatcttcagcatcactcataagaacatgaaaagcgtccgct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37157948 |
agagaaaaacctctgcttataaagaggccgcatcgtggcatgaaattttcggttcaaacaatcttcagcatcactcataagaacatgaaaagcgtccgct |
37157849 |
T |
|
| Q |
101 |
gcacattttcttgccagatgatcccctttatgctcttcattattttcatctaaaccttcaatcaaaggcaaggaactatttctgtctgatattaagcact |
200 |
Q |
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|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37157848 |
gcacattttcttgccaaatgatcccctttatgctcttcattattttcatctaaaccttcaatcaaaggcaaggaactatttctgtctgatattaagcact |
37157749 |
T |
|
| Q |
201 |
ctgtaagtatcttagtgatgtc |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
37157748 |
ctgtaagtatcttagtgatgtc |
37157727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 43391077 - 43390864
Alignment:
| Q |
1 |
agagaaaaacctctgcttataaagaggccgcatcgtggcatgaaattttcggttcaaacaatcttcagcatcactcataagaacatgaaaagcgtccgct |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43391077 |
agagaaaaacctctgcttatatagaggccgtactgtggcatgaaattttcggttcaaacaatcttcagcatcactcataagaacatgaaaagcttccgtg |
43390978 |
T |
|
| Q |
101 |
gcacattttcttgccagatgatcccctttatgctcttcattattttcatctaaaccttcaatcaaaggcaaggaactat---ttctgtctgatattaagc |
197 |
Q |
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|||||||| ||||||||| |||| | ||| |||| |||| |||||||| | | ||||||| ||||||| |||| | | |||||||||||||||||| |
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| T |
43390977 |
gcacatttccttgccagaggatcacatttctgcttttcagtattttcaagtgagccttcaactaaaggcacggaagtctttcttctgtctgatattaagc |
43390878 |
T |
|
| Q |
198 |
actctgtaagtatc |
211 |
Q |
| |
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||||||||| |||| |
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| T |
43390877 |
actctgtaaatatc |
43390864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 28908976 - 28908861
Alignment:
| Q |
1 |
agagaaaaacctctgcttataaagaggccgcatcgtggcatgaaattttcggttcaaacaatcttcagcatcactcataagaacatgaaaagcgtccgct |
100 |
Q |
| |
|
||||||||||||| ||||||| |||||| | | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28908976 |
agagaaaaacctcggcttatatagaggctgtactgtggcatgaaattttcagttcaaacaatcttcagcatcactcataagaacatgaaaagcttccgcg |
28908877 |
T |
|
| Q |
101 |
gcacattttcttgcca |
116 |
Q |
| |
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||||||||||||||| |
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| T |
28908876 |
acacattttcttgcca |
28908861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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