View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6975_low_44 (Length: 229)

Name: NF6975_low_44
Description: NF6975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6975_low_44
NF6975_low_44
[»] chr8 (11 HSPs)
chr8 (3-176)||(33067535-33067708)
chr8 (72-176)||(35901964-35902069)
chr8 (118-176)||(28207657-28207715)
chr8 (114-176)||(1369870-1369932)
chr8 (117-176)||(167858-167917)
chr8 (117-176)||(42636380-42636439)
chr8 (108-176)||(27801231-27801299)
chr8 (108-170)||(12684499-12684561)
chr8 (115-152)||(3520820-3520857)
chr8 (131-176)||(4384163-4384208)
chr8 (127-176)||(37813426-37813475)
[»] chr5 (10 HSPs)
chr5 (108-176)||(30501145-30501213)
chr5 (108-176)||(30541488-30541556)
chr5 (108-176)||(16667297-16667365)
chr5 (117-176)||(30104837-30104896)
chr5 (108-176)||(7719237-7719305)
chr5 (116-176)||(8208212-8208272)
chr5 (108-176)||(34899141-34899209)
chr5 (108-176)||(3140847-3140915)
chr5 (108-176)||(9276585-9276653)
chr5 (108-176)||(8221155-8221223)
[»] chr1 (6 HSPs)
chr1 (108-176)||(2864175-2864243)
chr1 (108-176)||(43397020-43397088)
chr1 (117-176)||(604445-604504)
chr1 (121-176)||(38491254-38491309)
chr1 (117-176)||(39150615-39150674)
chr1 (117-176)||(47187835-47187894)
[»] chr6 (6 HSPs)
chr6 (108-175)||(32823711-32823778)
chr6 (116-176)||(1841016-1841076)
chr6 (108-176)||(31855087-31855155)
chr6 (108-175)||(28874433-28874500)
chr6 (116-176)||(3766310-3766370)
chr6 (121-176)||(9762835-9762890)
[»] chr4 (16 HSPs)
chr4 (117-176)||(31429310-31429369)
chr4 (114-176)||(36702817-36702879)
chr4 (108-176)||(50341872-50341940)
chr4 (117-176)||(47995751-47995810)
chr4 (108-176)||(7444390-7444458)
chr4 (117-176)||(35777713-35777772)
chr4 (117-174)||(45900163-45900220)
chr4 (108-176)||(8261141-8261209)
chr4 (108-176)||(8274558-8274626)
chr4 (108-176)||(8297904-8297972)
chr4 (108-176)||(51834947-51835015)
chr4 (117-176)||(27953055-27953114)
chr4 (108-175)||(50427023-50427090)
chr4 (117-175)||(14031353-14031411)
chr4 (108-165)||(7852549-7852606)
chr4 (117-176)||(49084414-49084474)
[»] chr2 (3 HSPs)
chr2 (113-176)||(19890199-19890262)
chr2 (116-176)||(1334897-1334957)
chr2 (108-176)||(31452352-31452419)
[»] chr7 (6 HSPs)
chr7 (117-175)||(28770511-28770569)
chr7 (108-176)||(28663144-28663212)
chr7 (117-176)||(7653609-7653668)
chr7 (117-176)||(27123307-27123366)
chr7 (117-176)||(35496587-35496646)
chr7 (116-176)||(21727419-21727479)
[»] scaffold0419 (1 HSPs)
scaffold0419 (108-175)||(1099-1166)
[»] chr3 (2 HSPs)
chr3 (117-176)||(24791529-24791588)
chr3 (116-176)||(42846018-42846079)
[»] scaffold0036 (1 HSPs)
scaffold0036 (108-176)||(62530-62598)


Alignment Details
Target: chr8 (Bit Score: 134; Significance: 7e-70; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 3 - 176
Target Start/End: Complemental strand, 33067708 - 33067535
Alignment:
Q  3 aaacatttgttttgttagacttacacaaaatcatagagatcgcctaaaaatgaggctatttatttatgagaaatgttaacaagtgtcttggatatttgtt 102  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| | ||  ||||| ||    
T  33067708 aaacatttgttttgttagacttacacaaaatcatagagattgcctaaaaatgaggctatttatttatgaaaaatgttaacaagtgccctgagtatttatt 33067609  T
Q  103 aagagtttacataataagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33067608 aagagtttaaatagtaagttttaaatgaaaagttttgtattgaatgcattagacattgtaataattgacttttt 33067535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 72 - 176
Target Start/End: Complemental strand, 35902069 - 35901964
Alignment:
Q  72 gaaatgttaacaagtgtcttggatatttgttaag-agtttacataataagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattga 170  Q
    ||||||||||| |||||||    ||||| ||||| | |||| |||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||    
T  35902069 gaaatgttaacgagtgtctcatgtattttttaagcattttaaataataagtttttaatgaaaagttctgtattgaatgcattggaaattgtaataattga 35901970  T
Q  171 cttttt 176  Q
    ||||||    
T  35901969 cttttt 35901964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 28207715 - 28207657
Alignment:
Q  118 aagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    ||||||| ||||||||||| |||||||||||||||||| ||||||||| ||||||||||    
T  28207715 aagtttttaatgaaaagttgtgtattgaatgcattggaaattgtaatagttgacttttt 28207657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 176
Target Start/End: Original strand, 1369870 - 1369932
Alignment:
Q  114 taataagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    |||||||||||| |||||||||| | |||||||||||||||| ||||| ||| ||||||||||    
T  1369870 taataagttttatatgaaaagttatctattgaatgcattggaaattgtgatagttgacttttt 1369932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 167858 - 167917
Alignment:
Q  117 taagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    |||||||||||||||||||| |||| | ||||||||||| ||| ||||| ||||||||||    
T  167858 taagttttaaatgaaaagttatgtaataaatgcattggaaattataatagttgacttttt 167917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 42636380 - 42636439
Alignment:
Q  117 taagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    |||||||| ||||||||||| |||||| ||||||||| | ||||||||| ||||||||||    
T  42636380 taagtttttaatgaaaagttgtgtattaaatgcattgtaaattgtaatagttgacttttt 42636439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 27801231 - 27801299
Alignment:
Q  108 tttacataataagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    |||| ||| |||||||| ||| ||||||| |||| ||||||||||| | ||||||||| ||||||||||    
T  27801231 tttaaatagtaagtttttaataaaaagttgtgtaatgaatgcattgaaaattgtaatagttgacttttt 27801299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 170
Target Start/End: Original strand, 12684499 - 12684561
Alignment:
Q  108 tttacataataagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattga 170  Q
    |||| ||||||| |||| ||| |||||||||||| |||||||||| || ||||||||| ||||    
T  12684499 tttaaataataaatttttaattaaaagttttgtaatgaatgcattagaaattgtaatagttga 12684561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 3520820 - 3520857
Alignment:
Q  115 aataagttttaaatgaaaagttttgtattgaatgcatt 152  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  3520820 aataagtttttaatgaaaagttatgtattgaatgcatt 3520857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 4384163 - 4384208
Alignment:
Q  131 aaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    |||||| |||||||||||||||||| ||||||||| |||| |||||    
T  4384163 aaagttgtgtattgaatgcattggaaattgtaatagttgatttttt 4384208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 37813426 - 37813475
Alignment:
Q  127 atgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    |||||||||| |||||| ||||||||||| ||||||||  ||||||||||    
T  37813426 atgaaaagttgtgtattcaatgcattggaaattgtaatggttgacttttt 37813475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 30501145 - 30501213
Alignment:
Q  108 tttacataataagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    |||| ||| |||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||    
T  30501145 tttaaatagtaagttttaaatgaaaagttgtgtattgaatgtattggaaattgtaataattgacttttt 30501213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 30541488 - 30541556
Alignment:
Q  108 tttacataataagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    |||| ||| |||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||    
T  30541488 tttaaatagtaagttttaaatgaaaagttgtgtattgaatgtattggaaattgtaataattgacttttt 30541556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 16667297 - 16667365
Alignment:
Q  108 tttacataataagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    |||| ||| |||||||| |||||||| || ||||||||||| |||||| ||||||||||||||||||||    
T  16667297 tttaaatagtaagtttttaatgaaaaattgtgtattgaatgtattggaaattgtaataattgacttttt 16667365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 30104896 - 30104837
Alignment:
Q  117 taagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    |||||||| ||||||||||| |||||||||||||||||| ||||||||  ||||||||||    
T  30104896 taagtttttaatgaaaagttgtgtattgaatgcattggaaattgtaattgttgacttttt 30104837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 7719305 - 7719237
Alignment:
Q  108 tttacataataagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    |||| |||||||||||| ||||||||||| ||||||||||  |||||| ||||||||| |||| |||||    
T  7719305 tttaaataataagtttttaatgaaaagttgtgtattgaatatattggaaattgtaatagttgatttttt 7719237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 8208272 - 8208212
Alignment:
Q  116 ataagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    |||||||||| |||||||||| |||| ||||||||||  | ||||||||||||||||||||    
T  8208272 ataagttttatatgaaaagttatgtaatgaatgcattaaaaattgtaataattgacttttt 8208212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 34899141 - 34899209
Alignment:
Q  108 tttacataataagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    |||| ||| |||||||||||||||||||| | |||| |||||||| || ||||||||||||| ||||||    
T  34899141 tttaaatagtaagttttaaatgaaaagttatatattaaatgcattagaaattgtaataattgtcttttt 34899209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 3140915 - 3140847
Alignment:
Q  108 tttacataataagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    |||| |||||||||||||||| ||||||| | |||| |||| |||| | ||||||||| ||||||||||    
T  3140915 tttaaataataagttttaaataaaaagttgtatattaaatgaattgaaaattgtaatagttgacttttt 3140847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 9276585 - 9276653
Alignment:
Q  108 tttacataataagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    |||| ||| |||||||| ||||||||||| |||||||||||||||| | ||| ||||| |||| |||||    
T  9276585 tttaaatagtaagtttttaatgaaaagttatgtattgaatgcattgaaaattataatagttgatttttt 9276653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 8221223 - 8221155
Alignment:
Q  108 tttacataataagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    |||| ||| |||||||| ||| |||| || |||||||||||||||| |  |||||||| ||||||||||    
T  8221223 tttaaatagtaagtttttaataaaaaattgtgtattgaatgcattgaaagttgtaatagttgacttttt 8221155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 2864243 - 2864175
Alignment:
Q  108 tttacataataagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    |||| ||| |||||||| ||||||||||| |||||||||||||||||| ||||||||| ||||||||||    
T  2864243 tttaaatagtaagtttttaatgaaaagttgtgtattgaatgcattggaaattgtaatagttgacttttt 2864175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 43397020 - 43397088
Alignment:
Q  108 tttacataataagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    |||| ||| |||||||| ||||||||||| |||||| ||||||||||| ||| ||||| ||||||||||    
T  43397020 tttaaatagtaagtttttaatgaaaagttgtgtattaaatgcattggaaattataatagttgacttttt 43397088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 604445 - 604504
Alignment:
Q  117 taagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    |||||| | |||||||| || |||||||| ||||||||| ||| ||||||||||||||||    
T  604445 taagttcttaatgaaaaattgtgtattgagtgcattggaaattataataattgacttttt 604504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 176
Target Start/End: Complemental strand, 38491309 - 38491254
Alignment:
Q  121 ttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    |||| |||||||| || |||||||||||||||| | ||||||||| ||||||||||    
T  38491309 tttttaatgaaaaattgtgtattgaatgcattgtaaattgtaatagttgacttttt 38491254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 39150674 - 39150615
Alignment:
Q  117 taagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    |||| ||| |||||||| || |||||||||||||||| | ||||||||| ||||||||||    
T  39150674 taagattttaatgaaaatttatgtattgaatgcattgtaaattgtaatagttgacttttt 39150615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 47187835 - 47187894
Alignment:
Q  117 taagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    |||||||| |||||||| || |||||||||||||||||| ||| ||||| |||| |||||    
T  47187835 taagtttttaatgaaaaattatgtattgaatgcattggaaattataatagttgatttttt 47187894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 108 - 175
Target Start/End: Complemental strand, 32823778 - 32823711
Alignment:
Q  108 tttacataataagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgactttt 175  Q
    |||| |||| ||||||| ||||||||||| |||||||||||||||| | |||||||||||||||||||    
T  32823778 tttaaataacaagtttttaatgaaaagttgtgtattgaatgcattgaaaattgtaataattgactttt 32823711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 1841076 - 1841016
Alignment:
Q  116 ataagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    ||||||||| ||| ||||||| |||||||||||||||||| ||||||||| |||| |||||    
T  1841076 ataagtttttaattaaaagttgtgtattgaatgcattggaaattgtaatagttgatttttt 1841016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 31855155 - 31855087
Alignment:
Q  108 tttacataataagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    |||| ||| |||||||| |||||||| || | |||||||||||||||| ||||||||| ||||||||||    
T  31855155 tttaaatagtaagtttttaatgaaaaattgtatattgaatgcattggaaattgtaatagttgacttttt 31855087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 175
Target Start/End: Complemental strand, 28874500 - 28874433
Alignment:
Q  108 tttacataataagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgactttt 175  Q
    |||| |||| ||||||| |||||||| ||||||||||||||||||||| ||| ||||| |||| ||||    
T  28874500 tttaaataacaagtttttaatgaaaaattttgtattgaatgcattggaaattataatagttgattttt 28874433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 3766370 - 3766310
Alignment:
Q  116 ataagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    |||||||||| |||||||||| |||| |||||| |||  | ||||||||||||||||||||    
T  3766370 ataagttttatatgaaaagttatgtaatgaatgtattataaattgtaataattgacttttt 3766310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 176
Target Start/End: Complemental strand, 9762890 - 9762835
Alignment:
Q  121 ttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    |||||||||||||||| |||| |||||| ||| || ||| ||||||||||||||||    
T  9762890 ttttaaatgaaaagttgtgtactgaatgtattagaaattataataattgacttttt 9762835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 31429369 - 31429310
Alignment:
Q  117 taagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||| |||| |||||    
T  31429369 taagttttaaatgaaaagttgtgtattgaatgcattggaaattgtaatagttgatttttt 31429310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 176
Target Start/End: Complemental strand, 36702879 - 36702817
Alignment:
Q  114 taataagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    ||||||||||| |||||||| || |||||||||||||||| | ||||||||||||||||||||    
T  36702879 taataagtttttaatgaaaaattgtgtattgaatgcattgaaaattgtaataattgacttttt 36702817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 50341872 - 50341940
Alignment:
Q  108 tttacataataagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    |||| ||| ||| |||||||||||||||| |||||||||||| ||||| ||||||||| ||||||||||    
T  50341872 tttatatagtaaattttaaatgaaaagttgtgtattgaatgcgttggaaattgtaatagttgacttttt 50341940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 47995751 - 47995810
Alignment:
Q  117 taagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    |||||||| ||||||||||| |||||||||||||||| | |||||||||||| |||||||    
T  47995751 taagtttttaatgaaaagttatgtattgaatgcattgaaaattgtaataattaacttttt 47995810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 7444390 - 7444458
Alignment:
Q  108 tttacataataagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    |||| ||| |||||||| || |||||||| |||||||||||||||| | ||||||||| ||||||||||    
T  7444390 tttaaatactaagtttttaaagaaaagttgtgtattgaatgcattgaaaattgtaatagttgacttttt 7444458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 35777713 - 35777772
Alignment:
Q  117 taagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    |||||||| ||||||||||| ||||||||||||||| || ||||||||| || |||||||    
T  35777713 taagtttttaatgaaaagttgtgtattgaatgcattagaaattgtaatagttaacttttt 35777772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 45900163 - 45900220
Alignment:
Q  117 taagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttt 174  Q
    ||||||| | |||||||||| |||||||||||||||||| ||||| ||| ||||||||    
T  45900163 taagtttcatatgaaaagttgtgtattgaatgcattggaaattgtgatagttgacttt 45900220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 8261209 - 8261141
Alignment:
Q  108 tttacataataagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    |||| ||| |||||||| ||||||||||| |||||| ||||||||| | ||||||| | ||||||||||    
T  8261209 tttaaatagtaagtttttaatgaaaagttatgtattaaatgcattgaaaattgtaacagttgacttttt 8261141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 8274626 - 8274558
Alignment:
Q  108 tttacataataagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    |||| ||| |||||||| ||||||||||| |||||| ||||||||| | ||||||| | ||||||||||    
T  8274626 tttaaatagtaagtttttaatgaaaagttatgtattaaatgcattgaaaattgtaacagttgacttttt 8274558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 8297972 - 8297904
Alignment:
Q  108 tttacataataagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    |||| ||| |||||||| |||||||| || |||||||||||||||||| ||||||| | ||||| ||||    
T  8297972 tttaaatagtaagtttttaatgaaaaattgtgtattgaatgcattggaaattgtaacagttgacatttt 8297904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 51835015 - 51834947
Alignment:
Q  108 tttacataataagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    |||| ||| ||| |||| ||||||||||| |||||| ||||||||||| ||| ||||| ||||||||||    
T  51835015 tttaaatagtaaatttttaatgaaaagttgtgtatttaatgcattggaaattataatagttgacttttt 51834947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 27953055 - 27953114
Alignment:
Q  117 taagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    |||||||| || |||||||| |||||||||||||||| | ||||||||| || |||||||    
T  27953055 taagtttttaacgaaaagttgtgtattgaatgcattgaaaattgtaatagttaacttttt 27953114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 175
Target Start/End: Complemental strand, 50427090 - 50427023
Alignment:
Q  108 tttacataataagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgactttt 175  Q
    |||| ||| ||| |||| ||||||||||| ||| |||| ||||||||| ||||||||| |||||||||    
T  50427090 tttaaatagtaaatttttaatgaaaagttgtgtgttgattgcattggaaattgtaatagttgactttt 50427023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 175
Target Start/End: Original strand, 14031353 - 14031411
Alignment:
Q  117 taagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgactttt 175  Q
    ||||||||| |||||||||| | |||||||||||||| | ||||||||  |||||||||    
T  14031353 taagttttatatgaaaagttgtatattgaatgcattgaatattgtaattgttgactttt 14031411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 7852549 - 7852606
Alignment:
Q  108 tttacataataagttttaaatgaaaagttttgtattgaatgcattggacattgtaata 165  Q
    |||| ||| |||||||| ||||||||||| |||||| ||||||||| | |||||||||    
T  7852549 tttaaatagtaagtttttaatgaaaagttgtgtattaaatgcattgaaaattgtaata 7852606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 49084414 - 49084474
Alignment:
Q  117 taagttttaaatgaaaagttttgtattgaa-tgcattggacattgtaataattgacttttt 176  Q
    |||||||| ||||||||||| ||||||||| | ||||| | ||||||||| ||||||||||    
T  49084414 taagtttttaatgaaaagttgtgtattgaatttcattgaaaattgtaatagttgacttttt 49084474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 19890199 - 19890262
Alignment:
Q  113 ataataagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    |||||||||||| ||||||||||| |||||| ||||||||||| ||||||||| ||||||||||    
T  19890199 ataataagtttttaatgaaaagttgtgtattaaatgcattggaaattgtaatagttgacttttt 19890262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 1334897 - 1334957
Alignment:
Q  116 ataagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    ||||||||| |||||||| || | |||||||||||||||| ||||||||| |||| |||||    
T  1334897 ataagtttttaatgaaaaattgtatattgaatgcattggaaattgtaatagttgatttttt 1334957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 31452352 - 31452419
Alignment:
Q  108 tttacataataagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    |||| ||| |||||||| ||| ||||||| |||||||||||||||| | ||||||||  ||||||||||    
T  31452352 tttaaatagtaagtttttaat-aaaagttgtgtattgaatgcattgaaaattgtaattgttgacttttt 31452419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 175
Target Start/End: Complemental strand, 28770569 - 28770511
Alignment:
Q  117 taagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgactttt 175  Q
    |||||||| ||||||||||| |||||||||||||||||| ||||||||| |||||||||    
T  28770569 taagtttttaatgaaaagttgtgtattgaatgcattggaaattgtaatagttgactttt 28770511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 28663144 - 28663212
Alignment:
Q  108 tttacataataagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    |||| ||| |||| ||| |||||||| || |||||||||||||||| | ||||||||| ||||||||||    
T  28663144 tttaaatagtaaggttttaatgaaaaattgtgtattgaatgcattgaaaattgtaatagttgacttttt 28663212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 7653668 - 7653609
Alignment:
Q  117 taagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    |||||||| ||||||||||| |||| |||||| |||||| ||| ||||| ||||||||||    
T  7653668 taagtttttaatgaaaagttgtgtaatgaatgaattggaaattataatagttgacttttt 7653609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 27123366 - 27123307
Alignment:
Q  117 taagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    |||||||| || |||||||| |||| | ||||||||||| ||||||||| ||||||||||    
T  27123366 taagtttttaacgaaaagttgtgtacttaatgcattggaaattgtaatagttgacttttt 27123307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 35496587 - 35496646
Alignment:
Q  117 taagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    |||||||| |||||||| || |||| ||||||||||| | ||||||||| ||||||||||    
T  35496587 taagtttttaatgaaaaattgtgtaatgaatgcattgaaaattgtaatagttgacttttt 35496646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 21727419 - 21727479
Alignment:
Q  116 ataagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    ||||||||| ||| || | || ||||||||||| |||||| ||||||||| ||||||||||    
T  21727419 ataagtttttaataaatatttgtgtattgaatgtattggaaattgtaatagttgacttttt 21727479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 175
Target Start/End: Complemental strand, 1166 - 1099
Alignment:
Q  108 tttacataataagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgactttt 175  Q
    |||| |||| ||||||| |||||||| ||||||||||||||||||||| ||| ||||| |||| ||||    
T  1166 tttaaataacaagtttttaatgaaaaattttgtattgaatgcattggaaattataatagttgattttt 1099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 24791588 - 24791529
Alignment:
Q  117 taagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    |||||||| ||||||||||| |||||||||| ||||| | ||||||||| ||||||||||    
T  24791588 taagtttttaatgaaaagttatgtattgaatacattgaaaattgtaatagttgacttttt 24791529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 42846018 - 42846079
Alignment:
Q  116 ataagttttaaatgaaaagttttgtattgaatgc-attggacattgtaataattgacttttt 176  Q
    ||||||||| ||||||||||| |||||||||||| |||| | |||| |||| ||||||||||    
T  42846018 ataagtttttaatgaaaagttgtgtattgaatgcaattgaaaattgaaatagttgacttttt 42846079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 62530 - 62598
Alignment:
Q  108 tttacataataagttttaaatgaaaagttttgtattgaatgcattggacattgtaataattgacttttt 176  Q
    |||| ||| |||||||| ||| |||| || |||||||||||||||| | || |||||| ||||||||||    
T  62530 tttaaatagtaagtttttaataaaaaattatgtattgaatgcattgaaaatcgtaatagttgacttttt 62598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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