View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6975_low_45 (Length: 229)
Name: NF6975_low_45
Description: NF6975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6975_low_45 |
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| [»] chr8 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0056 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 22716494 - 22716737
Alignment:
| Q |
2 |
caaaagataaccctgatggtgttggatcctcggttgcctttgaagctcacgaccccaagaaaattcaacagaaggaactagagattgttgaaatagacca |
101 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
22716494 |
caaatgataaccctgatggtgttggatcctcggttgcctttgaagctcacgaccccaagaaaattcaatgaaaggaactagagattgttgaaatagacca |
22716593 |
T |
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| Q |
102 |
tgaagaagaggaagtaattatggacaaggtaccacaagcaaaatagctcacgctccccaccatcgag---------------actagtacagacaccaat |
186 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||| |||||| |
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| T |
22716594 |
tgaagaagaggaagtaattatggacaaggtaccacaggcaaaatagctcacggtccccaccatcgagacacaagaaaccaaaactagtacagaaaccaat |
22716693 |
T |
|
| Q |
187 |
gacaaggaggttac-gttgttgattcagaaattcatgaagagaa |
229 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
22716694 |
gacaaggaggttacggttgttgattcagaaattcatgaagagaa |
22716737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 2 - 170
Target Start/End: Original strand, 14646065 - 14646233
Alignment:
| Q |
2 |
caaaagataaccctgatggtgttggatcctcggttgcctttgaagctcacgaccccaagaaaattcaacagaaggaactagagattgttgaaatagacca |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
14646065 |
caaaagataaccctgatggtgttggatcctcggttgcctttgaagctcacaatcccaagtaaattcaacagaagaaactagagattgttgaaatagacca |
14646164 |
T |
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| Q |
102 |
tgaagaagaggaagtaattatggacaaggtaccacaagcaaaatagctcacgctccccaccatcgagac |
170 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||| ||| ||||| |
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| T |
14646165 |
tgaagaggaggaagtaattatggacaaggtaccacaagcaaaagagctcacggtccccatcattgagac |
14646233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 12451305 - 12451230
Alignment:
| Q |
2 |
caaaagataaccctgatggtgttggatcctcggttgcctttgaagctcacgaccccaagaaaattcaacagaagga |
77 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
12451305 |
caaaagataaccctgatggtgttggatcctcggttgcctttgaagctcacaatcccaagaaaattcaacagaagga |
12451230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 10765700 - 10765639
Alignment:
| Q |
169 |
actagtacagacaccaatgacaaggaggttacg-ttgttgattcagaaattcatgaagagaa |
229 |
Q |
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|||||||||| |||||||||||||||||||||| |||||||| ||||| ||||||||||||| |
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| T |
10765700 |
actagtacaggcaccaatgacaaggaggttacgtttgttgatacagaagttcatgaagagaa |
10765639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 14646247 - 14646308
Alignment:
| Q |
169 |
actagtacagacaccaatgacaaggaggtta-cgttgttgattcagaaattcatgaagagaa |
229 |
Q |
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||||||||| |||||||||||||||||||| ||||||||| || |||||||||||||||| |
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| T |
14646247 |
actagtacaagcaccaatgacaaggaggttatagttgttgatacaaaaattcatgaagagaa |
14646308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 21364290 - 21364530
Alignment:
| Q |
2 |
caaaagataaccctgatggtgttggatcctcggttgcctttgaagctcacgaccccaagaaaattcaacagaaggaactagagattgttgaaatagacca |
101 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21364290 |
caaaagataaccctgatggtgatggatcctcggttgcctttgaagctcacgatcccaagaaaattcaacagaaggaactagagattgttgaaatagacca |
21364389 |
T |
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| Q |
102 |
tgaagaagaggaagtaattatggacaaggtaccacaagcaaaatagctcacgctccccaccat---------------cgagactagtacagacaccaat |
186 |
Q |
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| ||||||||||||| || |||||| ||||||||||||||| |||||||| |||||||||| ||| |||||||||| ||||||| |
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| T |
21364390 |
t---gaagaggaagtaaatacggacaatgtaccacaagcaaaagagctcacggtccccaccattgagacacaagaaaccgaaactagtacaggcaccaat |
21364486 |
T |
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| Q |
187 |
gacaaggaggttacg-ttgttgattcagaaattcatgaagagaa |
229 |
Q |
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||||||||||||||| |||||||| ||||| ||||||||||||| |
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| T |
21364487 |
gacaaggaggttacgattgttgatacagaagttcatgaagagaa |
21364530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0056 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: scaffold0056
Description:
Target: scaffold0056; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 64628 - 64780
Alignment:
| Q |
1 |
tcaaaagataaccctgatggtgttggatcctcggttgcctttgaagctcacgaccccaagaaaattcaacagaaggaactagagattgttgaaatagacc |
100 |
Q |
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||||||||||||| |||||||||||| |||||||||||||||||||||||| | ||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
64628 |
tcaaaagataaccatgatggtgttgggtcctcggttgcctttgaagctcaccaacccaagaaaattcaacacaaggaaccagagattgttgaaatagacc |
64727 |
T |
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| Q |
101 |
atgaagaagaggaagtaattatggacaaggtaccacaagcaaaatagctcacg |
153 |
Q |
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||||||||||||||||||||| ||||||||| |||||||||||| |||||||| |
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| T |
64728 |
atgaagaagaggaagtaattacggacaaggtcccacaagcaaaagagctcacg |
64780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 61 - 170
Target Start/End: Original strand, 12483720 - 12483829
Alignment:
| Q |
61 |
aaaattcaacagaaggaactagagattgttgaaatagaccatgaagaagaggaagtaattatggacaaggtaccacaagcaaaatagctcacgctcccca |
160 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||| |||||| ||| ||||||||| ||||| |||||||| | |||||| |||||| |
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| T |
12483720 |
aaaattcaacagaaggaactagagattgttgacaaagaccatgaagacgaggaactaaatatggacaatgtaccgaaagcaaaagacctcacggtcccca |
12483819 |
T |
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| Q |
161 |
ccatcgagac |
170 |
Q |
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|||| ||||| |
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| T |
12483820 |
ccattgagac |
12483829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 12481492 - 12481543
Alignment:
| Q |
2 |
caaaagataaccctgatggtgttggatcctcggttgcctttgaagctcacga |
53 |
Q |
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|||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
12481492 |
caaaagataaccctcatggtgttggatccttggttgcctttgaagctcacga |
12481543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 12483854 - 12483904
Alignment:
| Q |
180 |
caccaatgacaaggaggttac-gttgttgattcagaaattcatgaagagaa |
229 |
Q |
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||||||||||||||||||||| ||||||||| ||||| ||||||||||||| |
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| T |
12483854 |
caccaatgacaaggaggttacggttgttgatacagaagttcatgaagagaa |
12483904 |
T |
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