View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6975_low_48 (Length: 222)
Name: NF6975_low_48
Description: NF6975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6975_low_48 |
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| [»] scaffold0019 (1 HSPs) |
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| [»] scaffold0196 (1 HSPs) |
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Alignment Details
Target: scaffold0019 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 8355 - 8576
Alignment:
| Q |
1 |
tatccgagttataaccaattagagtatcgcatgatttagaagtgtattgtgggagtgaaaagggaataaaactttaccgttccctttgttttttaaactt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8355 |
tatccgagttataaccaattagagtatcgcatgatttagaagtgtattgtgggagtgaaaagggaataaaactttaccgttccctttgtttttgaaactt |
8454 |
T |
|
| Q |
101 |
ctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccaccttttgcccatgtctaacctccatacttatgttcctcag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8455 |
ctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccaccttttgcccatgtctaacctccatacttatgttccttag |
8554 |
T |
|
| Q |
201 |
tgttggttttgatgcactacct |
222 |
Q |
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|||||||||||||||| ||||| |
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| T |
8555 |
tgttggttttgatgcattacct |
8576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 74 - 215
Target Start/End: Complemental strand, 11663569 - 11663428
Alignment:
| Q |
74 |
ttaccgttccctttgttttttaaacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccaccttttgcccatg |
173 |
Q |
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|||| ||||||||||| ||| ||||||||| ||||||||||| | ||| ||||||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
11663569 |
ttacagttccctttgtatttggaacttctccgagaattgttgctaagagggttgattttcctgagccaacttctccacagatagccaccttttgcccacg |
11663470 |
T |
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| Q |
174 |
tctaacctccatacttatgttcctcagtgttggttttgatgc |
215 |
Q |
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| T |
11663469 |
tctaacgtccaaatttatgtttcttagtgttggatttgatgc |
11663428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 74 - 212
Target Start/End: Complemental strand, 11618753 - 11618615
Alignment:
| Q |
74 |
ttaccgttccctttgttttttaaacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccaccttttgcccatg |
173 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||| | || ||||||||||| || ||||||||||||||||| ||||||||||||||||| |
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| T |
11618753 |
ttacagttccctttgttttagaaacttctccaagaattgttgctaagatggttgattttccggaaccaacttctccacaaatggccaccttttgcccatg |
11618654 |
T |
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| Q |
174 |
tctaacctccatacttatgttcctcagtgttggttttga |
212 |
Q |
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| T |
11618653 |
tctaacatctaaatttatgttccttagtgatggctttga |
11618615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 65 - 222
Target Start/End: Original strand, 11710015 - 11710172
Alignment:
| Q |
65 |
aataaaactttaccgttccctttgttttttaaacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccacctt |
164 |
Q |
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||||||| |||| ||||||||||| || ||| ||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11710015 |
aataaaagcttacagttccctttgtattaggaacctctccaagaattgttgctaataccgttgattttcctgagccaacttctccacaaatagccacctt |
11710114 |
T |
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| Q |
165 |
ttgcccatgtctaacctccatacttatgttcctcagtgttggttttgatgcactacct |
222 |
Q |
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| T |
11710115 |
ttgcccacgtctaacatccaagtttatgtttcttagtgttggctttgatgcattacct |
11710172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 96 - 222
Target Start/End: Original strand, 11631501 - 11631627
Alignment:
| Q |
96 |
aacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccaccttttgcccatgtctaacctccatacttatgttc |
195 |
Q |
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||||||||||||||||||||| | ||| |||||||| || ||||||||||||||||| |||||||| ||||| || || ||||||| | | |||||||| |
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| T |
11631501 |
aacttctccaagaattgttgctaagagggttgatttgccggagccaacttctccacagatagccactttttggccgtgcttaacctctaaatttatgttc |
11631600 |
T |
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| Q |
196 |
ctcagtgttggttttgatgcactacct |
222 |
Q |
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| T |
11631601 |
cgcagggttggctttgatgcattacct |
11631627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 99 - 206
Target Start/End: Original strand, 11673525 - 11673632
Alignment:
| Q |
99 |
ttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccaccttttgcccatgtctaacctccatacttatgttcctc |
198 |
Q |
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|||||||||||||||||| | || ||||||||||||||||||||||| ||||||||||||||| |||| |||||| |||| |||| | ||||| | || |
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| T |
11673525 |
ttctccaagaattgttgctaagatggttgattttcctgagccaacttcgccacaaatagccaccctttgtccatgtttaacgtccaaatttatgcttctt |
11673624 |
T |
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| Q |
199 |
agtgttgg |
206 |
Q |
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|||||||| |
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| T |
11673625 |
agtgttgg |
11673632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 97 - 170
Target Start/End: Original strand, 12093565 - 12093638
Alignment:
| Q |
97 |
acttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccaccttttgccc |
170 |
Q |
| |
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| T |
12093565 |
acttctccgagaattgctgctaataaagttgattttcctgagccaacttctccacaaatagctatcttttgccc |
12093638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 11756370 - 11756309
Alignment:
| Q |
97 |
acttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagc |
158 |
Q |
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|||||||| ||||||| ||| | | |||||||||||||||||||||||||||||||||||| |
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| T |
11756370 |
acttctccgagaattgctgctaataaagttgattttcctgagccaacttctccacaaatagc |
11756309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 11739337 - 11739395
Alignment:
| Q |
97 |
acttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaat |
155 |
Q |
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|||||||| ||||| | ||| | |||||||||||| ||||||||||||||||||||||| |
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| T |
11739337 |
acttctccgagaatcgctgctaagagagttgatttacctgagccaacttctccacaaat |
11739395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 52 - 216
Target Start/End: Complemental strand, 13127 - 12963
Alignment:
| Q |
52 |
ggagtgaaaagggaataaaactttaccgttccctttgttttttaaacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccac |
151 |
Q |
| |
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||||| |||||||||||||| |||| ||||||||||||| ||||||||||||||||||||| | || |||||||| || |||||||||| ||| | |
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| T |
13127 |
ggagtcaaaagggaataaaaacttacaattccctttgttttaggaacttctccaagaattgttgctaaaagggttgatttgccagagccaacttttccgc |
13028 |
T |
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| Q |
152 |
aaatagccaccttttgcccatgtctaacctccatacttatgttcctcagtgttggttttgatgca |
216 |
Q |
| |
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| |||||||||||||| |||||||||||||| | | |||| |||||| |||||| ||| ||||| |
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| T |
13027 |
agatagccaccttttggccatgtctaacctcaaaatttatactcctcaatgttggctttaatgca |
12963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 74 - 162
Target Start/End: Original strand, 31291038 - 31291126
Alignment:
| Q |
74 |
ttaccgttccctttgttttttaaacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccacc |
162 |
Q |
| |
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|||| ||| |||| ||||| |||||||||||||||||||||| | || |||||||||||||||||||||||||||||||| |||||| |
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| T |
31291038 |
ttacagttaccttagttttataaacttctccaagaattgttgttaatagtgttgattttcctgagccaacttctccacaaatggccacc |
31291126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 27957851 - 27957923
Alignment:
| Q |
83 |
cctttgttttttaaacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaat |
155 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| | || ||| ||||||||||| |||||||||||||||| |
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| T |
27957851 |
cctttgttttataaacttctccaagaattgttgctaatagcgttaattttcctgagacaacttctccacaaat |
27957923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 44812126 - 44812055
Alignment:
| Q |
96 |
aacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccaccttttg |
167 |
Q |
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||||||||||||||||| || | ||||| |||||| ||||||||||||||||||||||| || |||||||| |
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| T |
44812126 |
aacttctccaagaattgctgataagagagatgatttgcctgagccaacttctccacaaatcgcgaccttttg |
44812055 |
T |
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