View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6975_low_49 (Length: 215)
Name: NF6975_low_49
Description: NF6975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6975_low_49 |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 171090 - 170885
Alignment:
| Q |
1 |
catagcttattctctgtttcaggcaagaacaagatatataacttctatagtctcagggaaaaggtaaagacctaaaataacaaggctaaactccaaaaca |
100 |
Q |
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| T |
171090 |
catagcttattctctggttcaggcaagaacaagatatataacttctatagtctcagggaaaaggtaaagacctaaaataacaaggctaaactccaacaca |
170991 |
T |
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| Q |
101 |
acaaacttgttaagaaagtttgataaggtaaaatccacaaatctcatatgtgtgtgttatgttgctcactcatttgcaacaaataagttgggccctgatg |
200 |
Q |
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| T |
170990 |
acaaacttgttaagaaagtttgataaggtaaaatccacaaatctcatatgtgtgtgttatgttgctcactcatttgcaacaaataagttgggccctaatg |
170891 |
T |
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| Q |
201 |
tccatc |
206 |
Q |
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|||||| |
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| T |
170890 |
tccatc |
170885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 8 - 191
Target Start/End: Complemental strand, 171839 - 171656
Alignment:
| Q |
8 |
tattctctgtttcaggcaagaacaagatatataacttctatagtctcagggaaaaggtaaagacctaaaataacaaggctaaactccaaaacaacaaact |
107 |
Q |
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| T |
171839 |
tattctcagtttcaggctagaaca-gatataaaacttgcatggtctcagggaaaag-taaagacctaaa-taacaaggctaaactgaagaaaaacaaacc |
171743 |
T |
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| Q |
108 |
tgttaagaaagtttgataaggtaaaatccacaaatctcatatgtgt---gtgttatgttgctcactcatttgcaacaaataagttgg |
191 |
Q |
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| T |
171742 |
tgttaagaagttatcataaggtaaaatccacatatctcagatatgtatcttattatgttgctcactagtttgcaacatagaagttgg |
171656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 191
Target Start/End: Complemental strand, 171321 - 171271
Alignment:
| Q |
141 |
atctcatatgtgtgtgttatgttgctcactcatttgcaacaaataagttgg |
191 |
Q |
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| T |
171321 |
atctcatatgtgtatcttatgatgctcactcatttgcaacatagaagttgg |
171271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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