View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6975_low_5 (Length: 640)
Name: NF6975_low_5
Description: NF6975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6975_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 12 - 628
Target Start/End: Original strand, 15775049 - 15775675
Alignment:
| Q |
12 |
gacatcaaacttctcaatttttaccaatgttgttttacatattattctcgaagttatc------------caaatgggtagctaggaaaaaatggagatg |
99 |
Q |
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| T |
15775049 |
gacatcaaacttctcaatttttatcaatgttgttttacatattattctcgaagttatcaaagactatatccaaatgggtagctaggaaaaaatggagatg |
15775148 |
T |
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| Q |
100 |
gagacaagcatttatttcattggaaaaatacaaagaacgtctctctttctttattatttagtctcatctcatcattttatagtaatttagttccttctca |
199 |
Q |
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| T |
15775149 |
gagacaagcatttattccattggaaaaatacaaagaacgtctctctttccttattatttagtctcatctcatcattttatagtaatttagttccttctca |
15775248 |
T |
|
| Q |
200 |
tacgaaccaagagttcttgaaattacattttatgcttggcatattcaacaaacaataaagattttgaccatatgcttgtttttatctgttttgaaattta |
299 |
Q |
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| T |
15775249 |
ttcgaaccaagagttcttgaagttacattttatgcttggcatatttaagaaacaataaagattttgatcatatgcttgtttttatctgttttgaaattta |
15775348 |
T |
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| Q |
300 |
gtatgctgactcattgaatcatactcatcctttaaccaggaatgatatgtaattaatactcta-tttataatatctgccactgtgatctatgtctcattg |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
15775349 |
gtatgctgactcattgaatcatactcatcctttaaccaggaatgatctgtaattaatactccattttataatatctgccactgtgatctatgtctcattg |
15775448 |
T |
|
| Q |
399 |
aatggcnnnnnnnaatgagcaatactgctattcctcgcgagagaaatcatcccgagccgatcgcgaaaagtgtttagccaattgaatttgttcattacca |
498 |
Q |
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| T |
15775449 |
aatggctttttttaatgagc---agtgctattcctcgcgagagaaatcatcccgagccgatcgcgaaaagtgtttagccaattgaatttgttcattaccg |
15775545 |
T |
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| Q |
499 |
gaaaacatgggaggcaatggttacaatttacgaaagatatttagtaaacaaccatttgtgaaatcctcgctagctttgttgtcgctatacctagaaattt |
598 |
Q |
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| T |
15775546 |
gaaaacatgggaggcaatgcttacaatttacgaaagatattaagtaaacaaccatttgtgaaatcctcgctagctttgttgtcgctatacctagcaattt |
15775645 |
T |
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| Q |
599 |
tgctcctttaatatatttgcaattgatgtc |
628 |
Q |
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| T |
15775646 |
tgctcttttaatatatttgcaattgatgtc |
15775675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 462 - 514
Target Start/End: Complemental strand, 44738485 - 44738433
Alignment:
| Q |
462 |
cgaaaagtgtttagccaattgaatttgttcattaccagaaaacatgggaggca |
514 |
Q |
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| T |
44738485 |
cgaaaagtgcttagctaattgaatttggtcattaccgaaaaacatgggaggca |
44738433 |
T |
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