View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6975_low_7 (Length: 596)
Name: NF6975_low_7
Description: NF6975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6975_low_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 576; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 1 - 596
Target Start/End: Complemental strand, 30079258 - 30078663
Alignment:
| Q |
1 |
cacaagcatggacatattcttcgctgccggtaaaaacagaagcttattcccccaatccgtttcttcctcagacaatctcctaaaatcccatgttatcctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30079258 |
cacaagcatggacatattcttcgctgccggtaaaaacagaagcttattcccccaatccgtttcttcctcagacaatctccgaaaatcccatgttatcctt |
30079159 |
T |
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| Q |
101 |
cccgcaacaagaaaatgatccttcccattcatgatactccactccggcctcttcataagccaatcaaccagatcaagtgaagccgcatccctcctcgaga |
200 |
Q |
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| T |
30079158 |
cccgcaacaagaaaatgatccttcccattcatgatactccactccggcctcttcataagccaatcaaccagatcaagtgaagccgcatccctcctcgaga |
30079059 |
T |
|
| Q |
201 |
tattataaccccaaagataacgcgcaatatcaaacccagcataaaacggaacaaaaatcgcagcagcaatcgaagaatcctcagtcaaacactcatactg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
30079058 |
tattataaccccaaagataacgcgcaatatcaaacccagcataaaacggaacaaaaatcgcagcagcaattgaagaatcctcagtcaaacactcatactg |
30078959 |
T |
|
| Q |
301 |
cttcatcctattactaaatataacatcaacagcaaactgatttgtcgcataccaacccgtatccgagaaaaccccttcaacattctcaagtggcggccca |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
30078958 |
cttcatcctattactaaatataacatcaacagcaaactgatttgtcgcataccaacccgtatcggagaaaaccccttcaacattctcaagtggcggccca |
30078859 |
T |
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| Q |
401 |
agaccagcattggtagtaaacttacacatattagtccaaagactcaaactcttacactccttcaacatatcctcattaaaccttgaaggaagatcatgca |
500 |
Q |
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| T |
30078858 |
agaccagcattggtagtaaacttacacatattagtccaaagactcaaactcttacactccttcaacatatcctcattaaaccttgaaggaagatcatgca |
30078759 |
T |
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| Q |
501 |
cgtaaatatacctccccccacaaggatcactcttattttcaccggttttcaatgctttcataaaaggaaaactcttctcctccttcttctcctcct |
596 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30078758 |
cataaatatacctccccccacaaggatcactcttattttcaccggttttcaacgctttcataaaaggaaaactcttctcctccttcttctcctcct |
30078663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 163; Significance: 9e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 2 - 444
Target Start/End: Original strand, 39485890 - 39486332
Alignment:
| Q |
2 |
acaagcatggacatattcttcgctgccggtaaaaacagaagcttattcccccaatccgtttcttcctcagacaatctcctaaaatcccatgttatccttc |
101 |
Q |
| |
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|||||||| ||||||||||| || || |||||||||| ||||||||| |||||||| |||| |||||| |||||||||||||||||| || ||||| | |
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| T |
39485890 |
acaagcatagacatattcttagcagcaggtaaaaacaaaagcttattaccccaatctttttcatcctcactcaatctcctaaaatcccaagtaatcctac |
39485989 |
T |
|
| Q |
102 |
ccgcaacaagaaaatgatccttcccattcatgatactccactccggcctcttcataagccaatcaaccagatcaagtgaagccgcatccctcctcgagat |
201 |
Q |
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| T |
39485990 |
cagcaacaagaaaatgatctctcccattcataacaccccattccggtctcttcatcaaccaatcaacaagctcaacagaagcagcatctctcattgaaat |
39486089 |
T |
|
| Q |
202 |
attataaccccaaagataacgcgcaatatcaaacccagcataaaacggaacaaaaatcgcagcagcaatcgaagaatcctcagtcaaacactcatactgc |
301 |
Q |
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|||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||| ||||||||||| |||||||| | |||||||| ||||| || |
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| T |
39486090 |
attatacccccaaagataacgtgcaatgtcaaatccagcataaaacggtacaaaaacagcagcagcaattgaagaatcatttgtcaaacattcatattgt |
39486189 |
T |
|
| Q |
302 |
ttcatcctattactaaatataacatcaacagcaaactgatttgtcgcataccaacccgtatccgagaaaaccccttcaacattctcaagtggcggcccaa |
401 |
Q |
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||||||| || || ||||||||||||||||| ||||| || ||||||||||| ||||| |||||||| || || | || || |||||||| |||| |
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| T |
39486190 |
ttcatccggttcgcgaaaataacatcaacagcaaattgattagtagcataccaaccagtatcagagaaaactccgtcgatgttttcgagtggcggaccaa |
39486289 |
T |
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| Q |
402 |
gaccagcattggtagtaaacttacacatattagtccaaagact |
444 |
Q |
| |
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|||| ||||||||||||||||||||||| || ||||||||||| |
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| T |
39486290 |
gacctgcattggtagtaaacttacacatgttcgtccaaagact |
39486332 |
T |
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