View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6975_low_8 (Length: 576)
Name: NF6975_low_8
Description: NF6975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6975_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 530; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 9 - 566
Target Start/End: Original strand, 1482586 - 1483143
Alignment:
| Q |
9 |
accctaatgtccatgaggtgaattgaagaagatttgaagtgcagaaaaactattgaagatagttgaaggagatatcatagagcaaaaggaaaaggagatt |
108 |
Q |
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| T |
1482586 |
accctaatgtccatgaggtgaattgaaaaagatttgaagtgcagaaaaactattgaagatagttgaaggagatatcatagagcaaaaggaaaaggagatt |
1482685 |
T |
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| Q |
109 |
tgggctgagcttaatcatcttccgatgatttatagggttccaaaagcaaagaacttggtgatttttccaatctgcttaatcttctgcttgaagattaaag |
208 |
Q |
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| T |
1482686 |
tgggctgagcttaatcatcttctgatgatttatagggatccaaaagcaaagaacttggtgatttttccaatctgcttaatcttctgcttgaagattaaag |
1482785 |
T |
|
| Q |
209 |
ctgtatacattttagatttttccttgcatcaccattctttgatgattttgttgcaattttggtataatccattgtatatattacaatgtatgactataat |
308 |
Q |
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| T |
1482786 |
ctgtatacattttagatttttccttgcatcaccattctttgatgattttgttgcaattttggtataatccattgtatatattacaatgtatgactataat |
1482885 |
T |
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| Q |
309 |
tttgaattgaatgacacctgtttcttttctcttaatcaaattgtttggaattcaccatgactctttgtttgatataatatattcttctatattaattgat |
408 |
Q |
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| T |
1482886 |
tttgaattgaatgacacctgtttcttttctcttaatcaaattgtttggaattcaccatgactctttgtttgatataatatattcttctatattacttgat |
1482985 |
T |
|
| Q |
409 |
aatttttatttgagaggaagcgtggaaagaaagtgtaggtgtatgcatggtcagctaatggtttttgggagttgctgggtaaaatgtgcattgaaccaaa |
508 |
Q |
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| T |
1482986 |
aatttttatttgagaggaagcgtggaaagaaagtgtaggtgtatgcatggtcagctaatggttttagggagttgctgggtaaaatgtgcattgaaccaaa |
1483085 |
T |
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| Q |
509 |
ttagtgtgtaggttttaagggttaggggtttctgggagttgctaggcatgatgtccat |
566 |
Q |
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| T |
1483086 |
ttagtgtgtaggatttaaggattaggggtttctgggagttgctaggcatgatgtccat |
1483143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 15 - 552
Target Start/End: Original strand, 36717320 - 36717882
Alignment:
| Q |
15 |
atgtccatgaggtgaattgaagaagatttgaagtgcagaaaaactattgaagatagttgaaggagatatcatagagcaaaaggaaaaggagatttgggct |
114 |
Q |
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| T |
36717320 |
atgtccatgaggtgaattgaagaagatttaaagtgcaggaaaaa-attaaagagaattgaaggagaaatcttagagcaaatgggaaaggagatttgggct |
36717418 |
T |
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| Q |
115 |
gagcttaatcatcttccgatgatttatagggttccaa------aagcaaagaacttggtgatttttccaatctgcttaatcttctgcttgaagattaaag |
208 |
Q |
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| T |
36717419 |
gagcttaatcatcttctgatgatttatagggcttcaagaaggaaagcagagaacttggtgtttgatccagtttgtgtaatcttctacttgaagattatag |
36717518 |
T |
|
| Q |
209 |
ctgtatacattttagatttttccttgcatcaccattctttgatgattttgttgcaattttggtataatccattgtatatattacaatgtatgactataat |
308 |
Q |
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| T |
36717519 |
ctgtatacattttagatttttccttgcatcatcattctttgatgattttgttgcaattttggtgtaatccattgtatatattacaatgtatgactatagt |
36717618 |
T |
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| Q |
309 |
tttgaattgaatgacacctgtttcttttctcttaatcaaattgtttggaattcaccatgactctttgtttgatataatatattcttctatattaattgat |
408 |
Q |
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| T |
36717619 |
tttgaatcgaatgacacctatttcttttctcttaatcaaattgtttggaattcaccatgattctttgtttgataagatatatggttctctattacttgat |
36717718 |
T |
|
| Q |
409 |
aatttttatt-------------------tgagaggaagcgtggaaagaaagtgtag--gtgtatgcatggtcagctaatggtttttgggagttgctggg |
487 |
Q |
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| T |
36717719 |
tgttttttttttttttttttttctctttctgagaggaagcgtggaaggaaagtgtagctgtgtatgcatggttgggtaagggtttttgggagttgctggg |
36717818 |
T |
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| Q |
488 |
taaaatgtgcattgaaccaaattagtgtgtaggttttaagggttaggggtttctgggagttgcta |
552 |
Q |
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| T |
36717819 |
caaaatgtgtattgaatcaaaccaatgtgtaggatttaa-ggttaagggtttctgggagttgcta |
36717882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 257
Target Start/End: Original strand, 1483267 - 1483329
Alignment:
| Q |
195 |
cttgaagattaaagctgtatacattttagatttttccttgcatcaccattctttgatgatttt |
257 |
Q |
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| T |
1483267 |
cttgaagattacagttgtaaacattttaaatttttccttgcaccatcattctatgatgatttt |
1483329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 251 - 320
Target Start/End: Original strand, 36717995 - 36718065
Alignment:
| Q |
251 |
tgattttgttgcaattttggtataatccattgtatatattac-aatgtatgactataattttgaattgaat |
320 |
Q |
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| T |
36717995 |
tgatcttgttgcaatttaggtgtaatccattgtctatattacaaatgtatcacaacaattttgaatcgaat |
36718065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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