View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6976_high_4 (Length: 428)
Name: NF6976_high_4
Description: NF6976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6976_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 4 - 411
Target Start/End: Complemental strand, 51525690 - 51525283
Alignment:
| Q |
4 |
gggtaaataatactcatgtcaatgtcagtgttattggatttgaaatttggatgaggtgattaaaactagttagtggggaggggatataaaaatgatcatg |
103 |
Q |
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| T |
51525690 |
gggtaaataatactcatgtcaatgtcagtgttattggatttgaaatttggatgaggtgattaaaactagttagtggggaggggatataaaaatgatcatg |
51525591 |
T |
|
| Q |
104 |
tttacaggcaagtggtggtacaagtagtagcggaaaataaaggatgtggtatttgtcattgactcgtgcaattcgagggaattattttcgtctttgattg |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
51525590 |
tttacaggcaagtggtggtacaagtagtagcggaaaataaaggatgtggtatttgtcattgactcgtgcaatacgagggaattattttcgtctttgattg |
51525491 |
T |
|
| Q |
204 |
attggaatgaaagcaaccacccacaaactnnnnnnntactgtcaataatgaaatctcaatattcatgcgtctgcttcaactattcgtgtgtatgctttat |
303 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
51525490 |
attggaatgaaagcaaccacccacaaactaaaaaaatactgtcaataatgaaatctcaatattcatgcgtctccttcaactattcgtgtgtatgctttat |
51525391 |
T |
|
| Q |
304 |
attgtgctcctgtattaccgtgctcttgatttcactatcaattgaaatttaaataagactttgacacactcttatatcaggtaaaaaattgagttttacc |
403 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51525390 |
attgtgctcctgtattaccgtgctcttggtttcactatcaattgaaatttaaataagactttgacacactcttatatcaggtaaaaaattgagttttacc |
51525291 |
T |
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| Q |
404 |
aaatttac |
411 |
Q |
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|||||||| |
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| T |
51525290 |
aaatttac |
51525283 |
T |
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