View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6976_high_5 (Length: 378)
Name: NF6976_high_5
Description: NF6976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6976_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 17 - 366
Target Start/End: Complemental strand, 13261118 - 13260769
Alignment:
| Q |
17 |
catcatgcaacaccaagcgaagatgaaaatatggttgagggagaagctgagatagtgagtgataaatccttgtatagtgtgaacattttagatgtttctt |
116 |
Q |
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| T |
13261118 |
catcatgcaacaccaagtgaagatgaaaatatggttgagggagaagctgagatagtgagtgataaatccttgtatagtgtgaattctttagatgtttctt |
13261019 |
T |
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| Q |
117 |
ccaaggaatccagtggccattcggttgaacaagttcaaaatttggatgataataatggtgctatggacgaacctggtgcaatgtgccttgatgcatcgac |
216 |
Q |
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| T |
13261018 |
ccaaggaatccagtggccgttcggttgaacaagttcaaaatttggatgataacaatggtgctatggacgaacctgctgcaatgtgccttgatgcatcgac |
13260919 |
T |
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| Q |
217 |
atgtgtggaaaataccgacgagaacactaatgtggctgttcaagacactctagatgaggttcattcatctagttttgaagattctgatggggcaccagtt |
316 |
Q |
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| T |
13260918 |
atgtgtggaaaataccgacgagaacactaatgtggctgttcaagacactctagatgaggttcattcatctagttttgaagattctgatggggcaccagtt |
13260819 |
T |
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| Q |
317 |
ctagttctgcctactgatcctaatgaagtagagacgagtaatcttgatgt |
366 |
Q |
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| T |
13260818 |
caagttctgcctattgatcctaatgaagtagagacgagtaatctcgatgt |
13260769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 139 - 360
Target Start/End: Complemental strand, 13270043 - 13269819
Alignment:
| Q |
139 |
ggttgaacaagttcaaaatttggatgataataatggtgctatggacgaacctggtgcaatgtgccttgatgcatcgacatgtgtggaaaataccgacgag |
238 |
Q |
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| T |
13270043 |
ggttgaacacgttcccaatttggattataataattgtgttcaagttgaagctgctgcaatgtgctttgatgtgtccacatgtgcgaaaaatactgatgag |
13269944 |
T |
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| Q |
239 |
aacactaatgtggctgttcaagacactctagatgaggttcattcatctagttttgaagattctgatggggcaccagttctagttctgcctactgatc--- |
335 |
Q |
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| T |
13269943 |
aacaccgatgtgcctgttgaagataatctagatgaggtttgttcgtgtagttttgatgattcagatgggacagcacttcaagttctgcctactgatccaa |
13269844 |
T |
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| Q |
336 |
ctaatgaagtagagacgagtaatct |
360 |
Q |
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| T |
13269843 |
ccaatgaagtagagactagtgatct |
13269819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 314
Target Start/End: Complemental strand, 13269471 - 13269382
Alignment:
| Q |
225 |
aaaataccgacgagaacactaatgtggctgttcaagacactctagatgaggttcattcatctagttttgaagattctgatggggcaccag |
314 |
Q |
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| T |
13269471 |
aaaatactgatgagaacacagatgtggcttttgaagatattctacatgaggttcttttatctaactttgaagattcagatgggacaccag |
13269382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 13259891 - 13259827
Alignment:
| Q |
108 |
atgtttcttccaaggaatccagtggccattcggttgaacaagttcaaaatttggatgataataat |
172 |
Q |
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| T |
13259891 |
atgtttctccaaaggaatcaagtggctgtttggttgaacaacttcacaaattggatgataataat |
13259827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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