View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6976_high_6 (Length: 319)
Name: NF6976_high_6
Description: NF6976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6976_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 30 - 308
Target Start/End: Original strand, 29259719 - 29259998
Alignment:
| Q |
30 |
taatgatagagagaattaa--attttatctatttaatactttgtactccattttgaatacatttatatggtcaaacattaataattaagttgcaaaagag |
127 |
Q |
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| T |
29259719 |
taatgatagagagaatttataattttatctatttaatactttgtacttcattttgaatacatttatatggtcaaacattaataattaagttgcaaaagag |
29259818 |
T |
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| Q |
128 |
aaatgtatttattttttgagagaaaaagaggaatgtattaattgatcatgacagatggtaagtagcagccataaatgtgtaacccttcttcatgtctatg |
227 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29259819 |
aaatgtatttattttttgagagaaaaagagaaatgtattaattgatcatgacagatggtaagtagcagccataaa--tgtaacccttcttcatgtctatg |
29259916 |
T |
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| Q |
228 |
taataaacatacggtggataga-taaaaacttatagtgggaccatgtaatgtatacactttgttttgccgtatcaatttgat |
308 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29259917 |
taataaacatacggtggatagattaaaaacttatagtgggaccatgtaatgcatacactttgttttgccgtatcaatttgat |
29259998 |
T |
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