View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6976_low_1 (Length: 1186)

Name: NF6976_low_1
Description: NF6976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6976_low_1
NF6976_low_1
[»] chr8 (17 HSPs)
chr8 (563-897)||(29722216-29722550)
chr8 (687-775)||(13638290-13638378)
chr8 (687-775)||(13738703-13738791)
chr8 (302-394)||(39432332-39432426)
chr8 (672-800)||(42240320-42240448)
chr8 (300-423)||(220338-220462)
chr8 (300-423)||(689493-689617)
chr8 (300-423)||(733961-734085)
chr8 (300-423)||(857857-857981)
chr8 (300-349)||(7345423-7345472)
chr8 (300-423)||(16808335-16808461)
chr8 (305-413)||(14011024-14011133)
chr8 (302-416)||(25470829-25470944)
chr8 (805-880)||(13638212-13638287)
chr8 (805-880)||(13738625-13738700)
chr8 (759-798)||(36024103-36024142)
chr8 (687-726)||(38896172-38896211)
[»] chr6 (23 HSPs)
chr6 (563-897)||(32362551-32362885)
chr6 (655-894)||(17720314-17720551)
chr6 (717-897)||(15102214-15102394)
chr6 (589-897)||(29520423-29520732)
chr6 (685-894)||(17252441-17252651)
chr6 (293-412)||(22730688-22730809)
chr6 (302-423)||(9031763-9031886)
chr6 (306-423)||(4844144-4844262)
chr6 (302-395)||(24256913-24257008)
chr6 (306-395)||(32540954-32541045)
chr6 (302-423)||(26669635-26669757)
chr6 (304-416)||(3029965-3030079)
chr6 (303-349)||(30668235-30668281)
chr6 (703-749)||(34117544-34117590)
chr6 (696-749)||(34144553-34144606)
chr6 (696-749)||(34157169-34157222)
chr6 (302-383)||(25064684-25064767)
chr6 (306-393)||(30833018-30833107)
chr6 (832-893)||(8385240-8385301)
chr6 (302-384)||(19135926-19136010)
chr6 (848-897)||(34144709-34144758)
chr6 (848-897)||(34157325-34157374)
chr6 (370-423)||(34571444-34571497)
[»] chr4 (23 HSPs)
chr4 (563-897)||(28732191-28732525)
chr4 (672-897)||(8081569-8081794)
chr4 (685-795)||(56337943-56338053)
chr4 (302-413)||(49039431-49039543)
chr4 (302-384)||(15640457-15640542)
chr4 (301-412)||(34684564-34684674)
chr4 (354-422)||(39293579-39293647)
chr4 (304-413)||(49319392-49319503)
chr4 (302-423)||(54854155-54854277)
chr4 (316-413)||(21023338-21023435)
chr4 (759-800)||(41381553-41381594)
chr4 (302-363)||(9062173-9062236)
chr4 (301-393)||(18740921-18741016)
chr4 (328-385)||(44272959-44273018)
chr4 (849-897)||(56338111-56338159)
chr4 (302-349)||(41492549-41492596)
chr4 (336-412)||(47416499-47416576)
chr4 (756-791)||(53569598-53569633)
chr4 (756-812)||(55261556-55261614)
chr4 (756-794)||(9690008-9690046)
chr4 (304-349)||(4419737-4419782)
chr4 (300-349)||(27921891-27921940)
chr4 (303-348)||(53335306-53335351)
[»] chr7 (18 HSPs)
chr7 (563-897)||(38076705-38077039)
chr7 (563-894)||(14746640-14746971)
chr7 (296-412)||(35498389-35498505)
chr7 (300-349)||(7465461-7465510)
chr7 (756-860)||(27724620-27724724)
chr7 (302-423)||(27726345-27726467)
chr7 (302-423)||(43635585-43635707)
chr7 (303-423)||(32814825-32814946)
chr7 (305-413)||(44409201-44409309)
chr7 (319-422)||(32309125-32309229)
chr7 (302-346)||(32514690-32514734)
chr7 (302-382)||(45267942-45268024)
chr7 (856-894)||(4939025-4939063)
chr7 (300-334)||(14772401-14772435)
chr7 (300-334)||(15222853-15222887)
chr7 (316-395)||(19924778-19924859)
chr7 (301-423)||(11808034-11808158)
chr7 (306-412)||(43712300-43712407)
[»] chr2 (26 HSPs)
chr2 (563-897)||(856085-856419)
chr2 (563-897)||(3704213-3704546)
chr2 (563-897)||(34832885-34833219)
chr2 (687-897)||(39072621-39072831)
chr2 (681-895)||(13352095-13352311)
chr2 (804-897)||(20930989-20931082)
chr2 (300-423)||(39334857-39334981)
chr2 (302-423)||(34107271-34107393)
chr2 (316-413)||(44132548-44132647)
chr2 (304-416)||(1244568-1244681)
chr2 (302-423)||(20942085-20942204)
chr2 (301-394)||(32288372-32288467)
chr2 (304-423)||(38581582-38581701)
chr2 (300-405)||(38807876-38807983)
chr2 (303-406)||(2057479-2057581)
chr2 (756-791)||(31265814-31265849)
chr2 (303-349)||(917342-917388)
chr2 (301-384)||(3179320-3179405)
chr2 (302-384)||(21970453-21970538)
chr2 (112-154)||(26545908-26545950)
chr2 (303-349)||(34376540-34376586)
chr2 (756-793)||(6823001-6823038)
chr2 (303-344)||(22014713-22014754)
chr2 (303-384)||(44187701-44187785)
chr2 (302-412)||(44487754-44487865)
chr2 (756-813)||(45126361-45126418)
[»] chr3 (23 HSPs)
chr3 (563-897)||(38356012-38356346)
chr3 (563-897)||(52194930-52195264)
chr3 (563-896)||(55366097-55366430)
chr3 (631-894)||(53272610-53272872)
chr3 (576-895)||(1660393-1660706)
chr3 (685-894)||(36624258-36624469)
chr3 (679-859)||(18380576-18380759)
chr3 (307-423)||(33533205-33533322)
chr3 (305-393)||(31108765-31108855)
chr3 (316-392)||(34407096-34407174)
chr3 (756-795)||(46249373-46249412)
chr3 (303-349)||(28951864-28951910)
chr3 (300-345)||(16985015-16985060)
chr3 (304-345)||(19149423-19149464)
chr3 (848-897)||(21398428-21398477)
chr3 (302-349)||(38555078-38555126)
chr3 (756-795)||(4963949-4963988)
chr3 (302-349)||(6951841-6951888)
chr3 (304-423)||(24160504-24160624)
chr3 (316-395)||(51017801-51017881)
chr3 (304-341)||(6284876-6284913)
chr3 (696-749)||(10349662-10349715)
chr3 (300-422)||(49299217-49299339)
[»] chr5 (14 HSPs)
chr5 (918-1177)||(24653387-24653654)
chr5 (73-558)||(24652904-24653402)
chr5 (918-1161)||(24651387-24651626)
chr5 (955-1055)||(29418556-29418655)
chr5 (432-558)||(24651274-24651402)
chr5 (11-74)||(24652116-24652179)
chr5 (603-895)||(29488616-29488907)
chr5 (302-413)||(3535922-3536034)
chr5 (377-422)||(41181816-41181861)
chr5 (300-384)||(6447494-6447581)
chr5 (320-423)||(8934797-8934900)
chr5 (302-349)||(5932069-5932116)
chr5 (355-414)||(6291047-6291105)
chr5 (302-413)||(40250163-40250275)
[»] chr1 (24 HSPs)
chr1 (720-897)||(26701186-26701364)
chr1 (302-412)||(41998095-41998205)
chr1 (302-416)||(18179325-18179440)
chr1 (302-423)||(9931084-9931206)
chr1 (296-412)||(37262093-37262209)
chr1 (302-416)||(2643798-2643913)
chr1 (306-412)||(9769567-9769674)
chr1 (302-423)||(9410304-9410425)
chr1 (305-393)||(43020611-43020701)
chr1 (302-393)||(9768814-9768907)
chr1 (305-423)||(13941319-13941438)
chr1 (756-792)||(22565648-22565684)
chr1 (316-412)||(195055-195152)
chr1 (316-412)||(5684133-5684230)
chr1 (305-363)||(8758404-8758463)
chr1 (688-791)||(13868263-13868366)
chr1 (302-414)||(42908768-42908881)
chr1 (302-413)||(7906312-7906424)
chr1 (840-886)||(17823621-17823667)
chr1 (306-348)||(28417330-28417372)
chr1 (302-413)||(41677057-41677169)
chr1 (303-349)||(46670895-46670941)
chr1 (302-348)||(51917554-51917600)
chr1 (832-893)||(10122377-10122438)
[»] scaffold0057 (1 HSPs)
scaffold0057 (687-795)||(3380-3488)
[»] scaffold0119 (1 HSPs)
scaffold0119 (302-423)||(1036-1158)
[»] scaffold0045 (1 HSPs)
scaffold0045 (317-412)||(30885-30983)


Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 563 - 897
Target Start/End: Original strand, 29722216 - 29722550
Alignment:
Q  563 tggtgggtcgacgaagcgccggacaatcatgcaaatgctttggctcttgtgtgtatggattgtttgacacgaaagaaataatagaattttcaataataca 662  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  29722216 tggtgggtcgacgaagcgccggacaatcatgcaaatgttttggctcttgtgtgtatggattgtttggcacgaaagaaataatataattttcaataataca 29722315  T
Q  663 caacttactatgatagatcttgtagaaaaggttaagtatcattctttgtggtggatgaaagctaacaatgccaactttgtttatggcacaagtagatggt 762  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  29722316 caacttactatgatagatcttgtagaaaaggttaagtataattctttgtggtggctgaaagctaacaatgccaactttgtttatggcacgagtagatggt 29722415  T
Q  763 ggtcggacccgttactttgtttgggtatcgactaacttatttttgtaattatgtagtgactgtttattctttggggtgacctctctagtacaccttgtgc 862  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  29722416 ggtcggacccgttactttgtttgggtatcgactaacttatttttgtaattatgtagtgactgtttgttctttggggtgacctctttagtacaccttgtgc 29722515  T
Q  863 tatagagaattcatcgccgttgttaatatattcca 897  Q
    |||||||||||||||||||||||||||||||||||    
T  29722516 tatagagaattcatcgccgttgttaatatattcca 29722550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 687 - 775
Target Start/End: Complemental strand, 13638378 - 13638290
Alignment:
Q  687 gaaaaggttaagtatcattctttgtggtggatgaaagctaacaatgccaactttgtttatggcacaagtagatggtggtcggacccgtt 775  Q
    |||||||| ||| || |||| || |||||| ||||| | ||||||||||| |||||||||||||| | |||||||||||||||||||||    
T  13638378 gaaaaggtcaagcataattccttttggtggctgaaaacgaacaatgccaagtttgtttatggcacgattagatggtggtcggacccgtt 13638290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 687 - 775
Target Start/End: Complemental strand, 13738791 - 13738703
Alignment:
Q  687 gaaaaggttaagtatcattctttgtggtggatgaaagctaacaatgccaactttgtttatggcacaagtagatggtggtcggacccgtt 775  Q
    |||||||| ||| || |||| || |||||| ||||| | ||||||||||| |||||||||||||| | |||||||||||||||||||||    
T  13738791 gaaaaggtcaagcataattccttttggtggctgaaaacgaacaatgccaagtttgtttatggcacgattagatggtggtcggacccgtt 13738703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 302 - 394
Target Start/End: Complemental strand, 39432426 - 39432332
Alignment:
Q  302 cccgtgagcataattcagttggcagagacatgccttattatatgcagg--ttggagttcgaacctcagataccccgcttattcacattgaaaaaa 394  Q
    ||||||||||||  ||||||||||| |||||||  | |||||||||||  |||| |||||||||||||| ||||| ||||||||| |||||||||    
T  39432426 cccgtgagcatagctcagttggcagggacatgcaatgttatatgcaggggttggggttcgaacctcagacaccccacttattcactttgaaaaaa 39432332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 672 - 800
Target Start/End: Original strand, 42240320 - 42240448
Alignment:
Q  672 atgatagatcttgtagaaaaggttaagtatcattctttgtggtggatgaaagctaacaatgccaactttgtttatggcacaagtagatggtggtcggacc 771  Q
    |||||||||||  |||| |||||||| ||| ||||||| |||| | ||| ||||||| ||||  | |||||||||| | |    |||||||||| |||||    
T  42240320 atgatagatctactagacaaggttaaatataattctttttggttgctgatagctaaccatgcatattttgtttatgactctcaaagatggtggttggacc 42240419  T
Q  772 cgttactttgtttgggtatcgactaactt 800  Q
    |||||||||||||| ||||||||| ||||    
T  42240420 cgttactttgtttgagtatcgactgactt 42240448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 300 - 423
Target Start/End: Complemental strand, 220462 - 220338
Alignment:
Q  300 ttcccgtgagcataattcagttggcagagacatgccttattatatgcag--gttggagttcgaacctcagataccccgcttattcacattgaaaaaaggc 397  Q
    ||||||||||||||  ||||||||||| |||||||  | ||||||||||  ||  | ||||||| | | || ||||| ||||||||| |||||||| ||     
T  220462 ttcccgtgagcatagctcagttggcagggacatgcaatgttatatgcagaggtcagggttcgaatcccggacaccccacttattcaccttgaaaaa-ggt 220364  T
Q  398 gaattctaaccactagactccttgac 423  Q
    ||||||||||||||||||| ||||||    
T  220363 gaattctaaccactagactacttgac 220338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 300 - 423
Target Start/End: Complemental strand, 689617 - 689493
Alignment:
Q  300 ttcccgtgagcataattcagttggcagagacatgccttattatatgcag--gttggagttcgaacctcagataccccgcttattcacattgaaaaaaggc 397  Q
    ||||||||||||||  ||||||||||| |||||||  | ||||||||||  ||  | ||||||| | | || ||||| ||||||||| |||||||| ||     
T  689617 ttcccgtgagcatagctcagttggcagggacatgcaatgttatatgcagaggtcagggttcgaatcccggacaccccacttattcaccttgaaaaa-ggt 689519  T
Q  398 gaattctaaccactagactccttgac 423  Q
    ||||||||||||||||||| ||||||    
T  689518 gaattctaaccactagactacttgac 689493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 300 - 423
Target Start/End: Complemental strand, 734085 - 733961
Alignment:
Q  300 ttcccgtgagcataattcagttggcagagacatgccttattatatgcag--gttggagttcgaacctcagataccccgcttattcacattgaaaaaaggc 397  Q
    ||||||||||||||  ||||||||||| |||||||  | ||||||||||  ||  | ||||||| | | || ||||| ||||||||| |||||||| ||     
T  734085 ttcccgtgagcatagctcagttggcagggacatgcaatgttatatgcagaggtcagggttcgaatcccggacaccccacttattcaccttgaaaaa-ggt 733987  T
Q  398 gaattctaaccactagactccttgac 423  Q
    ||||||||||||||||||| ||||||    
T  733986 gaattctaaccactagactacttgac 733961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 300 - 423
Target Start/End: Complemental strand, 857981 - 857857
Alignment:
Q  300 ttcccgtgagcataattcagttggcagagacatgccttattatatgcag--gttggagttcgaacctcagataccccgcttattcacattgaaaaaaggc 397  Q
    ||||||||||||||  ||||||||||| |||||||  | ||||||||||  ||  | ||||||| | | || ||||| ||||||||| |||||||| ||     
T  857981 ttcccgtgagcatagctcagttggcagggacatgcaatgttatatgcagaggtcagggttcgaatcccggacaccccacttattcaccttgaaaaa-ggt 857883  T
Q  398 gaattctaaccactagactccttgac 423  Q
    ||||||||||||||||||| ||||||    
T  857882 gaattctaaccactagactacttgac 857857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 300 - 349
Target Start/End: Original strand, 7345423 - 7345472
Alignment:
Q  300 ttcccgtgagcataattcagttggcagagacatgccttattatatgcagg 349  Q
    ||||||||||||||| ||||||||||| ||||||| ||||||||||||||    
T  7345423 ttcccgtgagcataactcagttggcagggacatgcattattatatgcagg 7345472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 300 - 423
Target Start/End: Complemental strand, 16808461 - 16808335
Alignment:
Q  300 ttcccgtgagcataattcagttggcagagacatgccttattatatgcagg---ttggagttcgaacctcagataccccgcttattcacattgaaaaaagg 396  Q
    ||||| ||||||||| |||||| |||| ||||||| ||||||||||||||     || ||||||||| || | | ||| ||||||||| || |||||| |    
T  16808461 ttcccatgagcataactcagttagcagggacatgcattattatatgcaggggtggggggttcgaaccccatacagcccacttattcaccttaaaaaaaag 16808362  T
Q  397 cgaattctaaccactagactccttgac 423  Q
     |||||||||||||||| || ||||||    
T  16808361 tgaattctaaccactaggctgcttgac 16808335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 305 - 413
Target Start/End: Complemental strand, 14011133 - 14011024
Alignment:
Q  305 gtgagcataattcagttggcagagacatgccttattatatgca--ggttggagttcgaacctcagataccccgcttattcacattgaaaaaaggcgaatt 402  Q
    ||||||||| |||||||||||| ||||||| || |||||||||  ||  |||||||||||||| || | ||| ||||||||  || |||||| | |||||    
T  14011133 gtgagcatagttcagttggcagggacatgcattgttatatgcaggggccggagttcgaacctcggacatcccacttattcatctt-aaaaaatgtgaatt 14011035  T
Q  403 ctaaccactag 413  Q
    |||||||||||    
T  14011034 ctaaccactag 14011024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 416
Target Start/End: Complemental strand, 25470944 - 25470829
Alignment:
Q  302 cccgtgagcataattcagttggcagagacatgccttattatatgca--ggttggagttcgaacctcagataccccgcttattcacattgaaaaaaggcga 399  Q
    ||||||||||||| ||||||| |||  |||||| ||||||||| ||  ||| || ||||||||||| || |||||  |||||||| ||| || |||| ||    
T  25470944 cccgtgagcataactcagttgacaggaacatgcattattatattcatgggtcggggttcgaacctcggacaccccatttattcaccttg-aagaaggtga 25470846  T
Q  400 attctaaccactagact 416  Q
    |||||| ||||||||||    
T  25470845 attctagccactagact 25470829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 805 - 880
Target Start/End: Complemental strand, 13638287 - 13638212
Alignment:
Q  805 ttgtaattatgtagtgactgtttattctttggggtgacctctctagtacaccttgtgctatagagaattcatcgcc 880  Q
    |||||||||| |  ||||||||| |||||||||||| | ||| ||||||| ||||||||| ||||||  |||||||    
T  13638287 ttgtaattatattatgactgtttgttctttggggtggcttctttagtacatcttgtgctaaagagaaaccatcgcc 13638212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 805 - 880
Target Start/End: Complemental strand, 13738700 - 13738625
Alignment:
Q  805 ttgtaattatgtagtgactgtttattctttggggtgacctctctagtacaccttgtgctatagagaattcatcgcc 880  Q
    |||||||||| |  ||||||||| |||||||||||| | ||| ||||||| ||||||||| ||||||  |||||||    
T  13738700 ttgtaattatattatgactgtttgttctttggggtggcttctttagtacatcttgtgctaaagagaaaccatcgcc 13738625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 759 - 798
Target Start/End: Complemental strand, 36024142 - 36024103
Alignment:
Q  759 tggtggtcggacccgttactttgtttgggtatcgactaac 798  Q
    |||||||| ||||||||||||||||||||||| |||||||    
T  36024142 tggtggtcagacccgttactttgtttgggtattgactaac 36024103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 687 - 726
Target Start/End: Original strand, 38896172 - 38896211
Alignment:
Q  687 gaaaaggttaagtatcattctttgtggtggatgaaagcta 726  Q
    ||||| || |||||||||||||||||||||||||||||||    
T  38896172 gaaaaagtaaagtatcattctttgtggtggatgaaagcta 38896211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 563 - 897
Target Start/End: Complemental strand, 32362885 - 32362551
Alignment:
Q  563 tggtgggtcgacgaagcgccggacaatcatgcaaatgctttggctcttgtgtgtatggattgtttgacacgaaagaaataatagaattttcaataataca 662  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  32362885 tggtgggtcgacgaagcgccggacaatcatgcaaatgctttggctcttgtgtgtatggattgtttggcacgaaagaaataatagaattttcaataataca 32362786  T
Q  663 caacttactatgatagatcttgtagaaaaggttaagtatcattctttgtggtggatgaaagctaacaatgccaactttgtttatggcacaagtagatggt 762  Q
    ||||||  ||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  32362785 caacttgttatgatagatcttgtagaaaaggttaagtataattcattgtggtggttgaaagctaacaatgccaactttgtttatggcacgagtagatggt 32362686  T
Q  763 ggtcggacccgttactttgtttgggtatcgactaacttatttttgtaattatgtagtgactgtttattctttggggtgacctctctagtacaccttgtgc 862  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||| |||||||    
T  32362685 ggtcggacccgttactttgtttgggtatcgactaacttatttttgtaattatgtagtgactgtttgttctttgggatgacctctttagtacatcttgtgc 32362586  T
Q  863 tatagagaattcatcgccgttgttaatatattcca 897  Q
    |||||||||||||||||||||||||||||||||||    
T  32362585 tatagagaattcatcgccgttgttaatatattcca 32362551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 173; E-Value: 2e-92
Query Start/End: Original strand, 655 - 894
Target Start/End: Complemental strand, 17720551 - 17720314
Alignment:
Q  655 ataatacacaacttactatgatagatcttgtagaaaaggttaagtatcattctttgtggtggatgaaagctaacaatgccaactttgtttatggcacaag 754  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  17720551 ataatactcaccttactatgatagatcttgtagaaaaggttaagtatcattctttgtggtggatgaaagctaaccatgccaactttgtttatggcacgag 17720452  T
Q  755 tagatggtggtcggacccgttactttgtttgggtatcgactaacttatttttgtaattatgtagtgactgtttattctttggggtgacctctctagtaca 854  Q
    |||||||||||||||||||||| ||||||||||||||||||||  | |||||||||||  ||||||||||||| |||||||||||||||||  |||||||    
T  17720451 tagatggtggtcggacccgttaatttgtttgggtatcgactaa--tttttttgtaatttagtagtgactgtttgttctttggggtgacctcattagtaca 17720354  T
Q  855 ccttgtgctatagagaattcatcgccgttgttaatatatt 894  Q
    ||||||||||| |||| |||| ||||||||||||||||||    
T  17720353 ccttgtgctatcgagagttcaccgccgttgttaatatatt 17720314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 717 - 897
Target Start/End: Original strand, 15102214 - 15102394
Alignment:
Q  717 atgaaagctaacaatgccaactttgtttatggcacaagtagatggtggtcggacccgttactttgtttgggtatcgactaacttatttttgtaattatgt 816  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||      
T  15102214 atgaaagctaacaatgccaactttatttatggcacgagtagatggtggtcggacccgttactttatttgggtatcgactaatttgtttttgtaattattc 15102313  T
Q  817 agtgactgtttattctttggggtgacctctctagtacaccttgtgctatagagaattcatcgccgttgttaatatattcca 897  Q
    ||||| || || |||||||| ||||| ||| ||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  15102314 agtgaatgcttgttctttggagtgacttctttagtacaccttgtgctacagagaattcaccgccgttgttaatatattcca 15102394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 589 - 897
Target Start/End: Complemental strand, 29520732 - 29520423
Alignment:
Q  589 tcatgcaaatgctttggctcttgtgtgtatggattgtttgacacgaaagaaataatagaattttcaataatacacaacttactatgatagatcttgtaga 688  Q
    |||||||| | |||||||||||||||||  |||| |||||  | ||| |||| || | ||| ||||| ||||  |||  ||| |||||||| ||| ||||    
T  29520732 tcatgcaacttctttggctcttgtgtgtgcggatagtttggaatgaacgaaacaacaaaatattcaagaatattcaaactaccatgatagaacttttaga 29520633  T
Q  689 aaaggttaagtatcattctttgtggtggatgaaagctaacaatgccaactttgtttatggcacaagtagatggtggtcggacccgttactttgtttgggt 788  Q
    ||||||||| ||| | || || |||||| ||||||| ||||||||||| |||||||||| ||    ||||||||||||| | | |||||||||||  |||    
T  29520632 aaaggttaaatataactcattttggtggctgaaagcaaacaatgccaattttgtttatgacaatcatagatggtggtcgaatctgttactttgttgtggt 29520533  T
Q  789 atcgactaacttatt-tttgtaattatgtagtgactgtttattctttggggtgacctctctagtacaccttgtgctatagagaattcatcgccgttgtta 887  Q
    ||||||| || | |  |||||||||||  ||||| | ||| || ||||||||| ||||| |||||||||||||||| ||||| |  ||||| || |||||    
T  29520532 atcgactgacctttgctttgtaattatacagtgattctttgttttttggggtggcctctttagtacaccttgtgctttagaggaaccatcgtcggtgtta 29520433  T
Q  888 atatattcca 897  Q
    ||||||||||    
T  29520432 atatattcca 29520423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 685 - 894
Target Start/End: Original strand, 17252441 - 17252651
Alignment:
Q  685 tagaaaaggttaagtatcattctttgtggtggatgaaagctaacaatgccaactttgtttatggcacaagtagatggtggtcggacccgttactttgttt 784  Q
    ||||||||||||| || || ||| | |||||| | |||||| ||||||||||||||||||||| ||  | ||  ||||||||||||| ||||||||||||    
T  17252441 tagaaaaggttaaataccaatctctttggtggcttaaagctcacaatgccaactttgtttatgacatca-taactggtggtcggacctgttactttgttt 17252539  T
Q  785 gggtatcgactaacttat-ttttgtaattatgtagtgactgtttattcttt-ggggtgacctctctagtacaccttgtgctatagagaattcatcgccgt 882  Q
    ||||||||||| || | | ||||||||||||  |||| |||||| || ||| ||||||| ||||  |||||||||||| ||  | ||||| |||||||      
T  17252540 gggtatcgactgacctctcttttgtaattatacagtgcctgtttgttgtttcggggtgatctcttgagtacaccttgtactgaaaagaatccatcgccag 17252639  T
Q  883 tgttaatatatt 894  Q
    ||||||||||||    
T  17252640 tgttaatatatt 17252651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 293 - 412
Target Start/End: Complemental strand, 22730809 - 22730688
Alignment:
Q  293 ttgttttttcccgtgagcataattcagttggcagagacatgccttattatatgcagg--ttggagttcgaacctcagataccccgcttattcacattgaa 390  Q
    |||||| | ||||||||||||| ||||||||||||||||||| || |||||||||||   || |||||||||||| || ||||| ||||||||| || ||    
T  22730809 ttgtttgtccccgtgagcataactcagttggcagagacatgcattgttatatgcagggactgaagttcgaacctcggacaccccacttattcaccttaaa 22730710  T
Q  391 aaaaggcgaattctaaccacta 412  Q
    | |||| |||||||| ||||||    
T  22730709 ataaggtgaattctagccacta 22730688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 302 - 423
Target Start/End: Original strand, 9031763 - 9031886
Alignment:
Q  302 cccgtgagcataattcagttggcagagacatgccttattatatgcagg--ttggagttcgaacctcagataccccgcttattcacattgaaaaaaggcga 399  Q
    ||||||| ||||  ||||||||||| ||||||| || |||||||||||  ||| |||| |||||||||| ||||| ||||||||  |  |||||||| ||    
T  9031763 cccgtgaacatagctcagttggcagggacatgcattgttatatgcagggcttgaagtttgaacctcagacaccccacttattcatttaaaaaaaaggtga 9031862  T
Q  400 attctaaccactagactccttgac 423  Q
    ||||||||||||||||| ||||||    
T  9031863 attctaaccactagactacttgac 9031886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 306 - 423
Target Start/End: Original strand, 4844144 - 4844262
Alignment:
Q  306 tgagcataattcagttggcagagacatgccttattatatgca--ggttggagttcgaacctcagataccccgcttattcacattgaaaaaaggcgaattc 403  Q
    |||| |||| ||||||||||| ||||||| || |||||||||  ||| || |||  ||||||||| ||| | ||||||||| ||||||||| | ||||||    
T  4844144 tgagtataactcagttggcagggacatgcattgttatatgcaggggtcggggtttaaacctcagacacctcacttattcaccttgaaaaaa-gtgaattc 4844242  T
Q  404 taaccactagactccttgac 423  Q
    ||||||||||||| ||||||    
T  4844243 taaccactagactacttgac 4844262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 302 - 395
Target Start/End: Original strand, 24256913 - 24257008
Alignment:
Q  302 cccgtgagcataattcagttggcagagacatgccttattatatgca--ggttggagttcgaacctcagataccccgcttattcacattgaaaaaag 395  Q
    ||||||||||||| |||||||| |||||||||| ||||||||||||  ||  |  ||||||||| | |||||||| ||||||||| ||||||||||    
T  24256913 cccgtgagcataagtcagttggtagagacatgcattattatatgcaggggccgaggttcgaaccccggataccccacttattcaccttgaaaaaag 24257008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 306 - 395
Target Start/End: Complemental strand, 32541045 - 32540954
Alignment:
Q  306 tgagcataattcagttggcagagacatgccttat--tatatgcaggttggagttcgaacctcagataccccgcttattcacattgaaaaaag 395  Q
    |||||||| |||||||||||||||||||| ||||  |||||  |||| |||||||||||  |||||||||| ||||||||| || |||||||    
T  32541045 tgagcatagttcagttggcagagacatgcattattatatatagaggtcggagttcgaactccagataccccacttattcaccttaaaaaaag 32540954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 302 - 423
Target Start/End: Complemental strand, 26669757 - 26669635
Alignment:
Q  302 cccgtgagcataattcagttggcagagacatgccttattatatgca--ggttggagttcgaacctcagataccccgcttattcacattgaaaaaaggcga 399  Q
    ||||||||||||  |||||||| || ||||||| | |||||||| |  || ||| ||||||||| |||| ||||| ||||||||| ||| ||||||| ||    
T  26669757 cccgtgagcatagctcagttggtagggacatgcataattatatgtaggggctggggttcgaaccccagacaccccacttattcaccttg-aaaaaggtga 26669659  T
Q  400 attctaaccactagactccttgac 423  Q
    |||||| |||||| ||| ||||||    
T  26669658 attctagccactaaactacttgac 26669635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 416
Target Start/End: Original strand, 3029965 - 3030079
Alignment:
Q  304 cgtgagcataattcagttggcagagacatgccttattatatgcag--gttggagttcgaacctcagataccccgcttattcacattgaaaaaaggcgaat 401  Q
    ||||||||||| | ||||||||| |||||   |||||||||| ||  |||||||||||||||   || ||||| ||||||||| || |||||| | ||||    
T  3029965 cgtgagcataacttagttggcagggacataaattattatatgtagtggttggagttcgaaccctggacaccccacttattcaccttaaaaaaatgtgaat 3030064  T
Q  402 tctaaccactagact 416  Q
    |||||||||| ||||    
T  3030065 tctaaccactggact 3030079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 303 - 349
Target Start/End: Complemental strand, 30668281 - 30668235
Alignment:
Q  303 ccgtgagcataattcagttggcagagacatgccttattatatgcagg 349  Q
    |||||||||||| |||||||||| |||||||| ||||||||||||||    
T  30668281 ccgtgagcataactcagttggcatagacatgcattattatatgcagg 30668235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 703 - 749
Target Start/End: Original strand, 34117544 - 34117590
Alignment:
Q  703 attctttgtggtggatgaaagctaacaatgccaactttgtttatggc 749  Q
    ||||||| |||||| ||||||| ||||||||||||||||||||||||    
T  34117544 attctttttggtggctgaaagccaacaatgccaactttgtttatggc 34117590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 696 - 749
Target Start/End: Original strand, 34144553 - 34144606
Alignment:
Q  696 aagtatcattctttgtggtggatgaaagctaacaatgccaactttgtttatggc 749  Q
    |||||| ||||||| |||| | ||||||| ||||||||||||||||||||||||    
T  34144553 aagtataattctttttggtagctgaaagccaacaatgccaactttgtttatggc 34144606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 696 - 749
Target Start/End: Original strand, 34157169 - 34157222
Alignment:
Q  696 aagtatcattctttgtggtggatgaaagctaacaatgccaactttgtttatggc 749  Q
    |||||| ||||||| |||| | ||||||| ||||||||||||||||||||||||    
T  34157169 aagtataattctttttggtagctgaaagccaacaatgccaactttgtttatggc 34157222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 302 - 383
Target Start/End: Complemental strand, 25064767 - 25064684
Alignment:
Q  302 cccgtgagcataattcagttggcagagacatgccttattatatgca--ggttggagttcgaacctcagataccccgcttattca 383  Q
    |||||||||||| ||||||||| |  ||||||| ||||||||||||  |||||| ||||||||| |||| ||||| ||| ||||    
T  25064767 cccgtgagcatagttcagttggtatggacatgcattattatatgcaggggttggggttcgaaccccagacaccccacttcttca 25064684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 393
Target Start/End: Original strand, 30833018 - 30833107
Alignment:
Q  306 tgagcataattcagttggcagagacatgccttattatatgca--ggttggagttcgaacctcagataccccgcttattcacattgaaaaa 393  Q
    |||||||| |||||||||||| ||||||| || |||||||||  ||| || ||||||||| | || ||||| ||||||| | ||||||||    
T  30833018 tgagcatagttcagttggcagggacatgcattgttatatgcaggggtcggggttcgaaccccggacaccccacttattctccttgaaaaa 30833107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 832 - 893
Target Start/End: Original strand, 8385240 - 8385301
Alignment:
Q  832 tttggggtgacctctctagtacaccttgtgctatagagaattcatcgccgttgttaatatat 893  Q
    |||||||||||||||  |||||||||||||||   | | ||||| |||||||||||||||||    
T  8385240 tttggggtgacctcttgagtacaccttgtgcttatggggattcaccgccgttgttaatatat 8385301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 302 - 384
Target Start/End: Original strand, 19135926 - 19136010
Alignment:
Q  302 cccgtgagcataattcagttggcagagacatgccttattatatgca--ggttggagttcgaacctcagataccccgcttattcac 384  Q
    ||||||||||||  || |||||||| ||||||| ||||||||||||  |||||  |||||||||||| | ||| | |||||||||    
T  19135926 cccgtgagcatagctcggttggcagggacatgcattattatatgcatgggttgacgttcgaacctcatacaccacacttattcac 19136010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 848 - 897
Target Start/End: Original strand, 34144709 - 34144758
Alignment:
Q  848 tagtacaccttgtgctatagagaattcatcgccgttgttaatatattcca 897  Q
    ||||||||||||||||  |||||||| | | |||||||||||||||||||    
T  34144709 tagtacaccttgtgctgaagagaatttaccaccgttgttaatatattcca 34144758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 848 - 897
Target Start/End: Original strand, 34157325 - 34157374
Alignment:
Q  848 tagtacaccttgtgctatagagaattcatcgccgttgttaatatattcca 897  Q
    ||||||||||||||||  |||||||| | | |||||||||||||||||||    
T  34157325 tagtacaccttgtgctgaagagaatttaccaccgttgttaatatattcca 34157374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 370 - 423
Target Start/End: Original strand, 34571444 - 34571497
Alignment:
Q  370 accccgcttattcacattgaaaaaaggcgaattctaaccactagactccttgac 423  Q
    ||||| ||||||| | ||||||||||| |||||||||||||||| || ||||||    
T  34571444 accccacttattcgctttgaaaaaaggggaattctaaccactagtctacttgac 34571497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 279; Significance: 1e-155; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-155
Query Start/End: Original strand, 563 - 897
Target Start/End: Original strand, 28732191 - 28732525
Alignment:
Q  563 tggtgggtcgacgaagcgccggacaatcatgcaaatgctttggctcttgtgtgtatggattgtttgacacgaaagaaataatagaattttcaataataca 662  Q
    |||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||     
T  28732191 tggtgggtcgacaaagcgccgaacaattatgcaaatgctttggctcttgtgtgtatggattgtttagcacgaaagaaataatagaattttcaataatacc 28732290  T
Q  663 caacttactatgatagatcttgtagaaaaggttaagtatcattctttgtggtggatgaaagctaacaatgccaactttgtttatggcacaagtagatggt 762  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  28732291 caacttactatgatagatcttgtagaaaaggttaagtataattcattgtggtggctgaaagctaacaatgccaactttgtttatggcacgagtagatggt 28732390  T
Q  763 ggtcggacccgttactttgtttgggtatcgactaacttatttttgtaattatgtagtgactgtttattctttggggtgacctctctagtacaccttgtgc 862  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||    
T  28732391 ggtcggacccgttactttgtttgggtatcgactaacttgtttttgtaattatgtagtgactgtttggtctttggggtgacctctttagtacaccttgtgc 28732490  T
Q  863 tatagagaattcatcgccgttgttaatatattcca 897  Q
    |||||||||||||||||||||||||||||||||||    
T  28732491 tatagagaattcatcgccgttgttaatatattcca 28732525  T

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Target: chr4; HSP #2
Raw Score: 95; E-Value: 7e-46
Query Start/End: Original strand, 672 - 897
Target Start/End: Complemental strand, 8081794 - 8081569
Alignment:
Q  672 atgatagatcttgtagaaaaggttaagtatcattctttgtggtggatgaaagctaacaatgccaactttgtttatggcacaagtagatggtggtcggacc 771  Q
    |||||||| ||| ||||||||||||| ||| | | ||| |||||| ||||||||||||||| ||| ||||||||||||||   |||||||||||||||||    
T  8081794 atgatagaacttttagaaaaggttaaatataactttttttggtggctgaaagctaacaatgtcaattttgtttatggcactcatagatggtggtcggacc 8081695  T
Q  772 cgttactttgtttgggtatcgactaa-cttatttttgtaattatgtagtgactgtttattctttggggtgacctctctagtacaccttgtgctatagaga 870  Q
    | |||||||||||| |||||||| || |||   |||||||||||  |||||||||||||| ||||||||||| ||| |||||||||||||||| |||||     
T  8081694 cattactttgtttgagtatcgacaaacctttgctttgtaattatacagtgactgtttatt-tttggggtgacttctttagtacaccttgtgctttagagg 8081596  T
Q  871 attcatcgccgttgttaatatattcca 897  Q
    |  |||||||| ||||| |||||||||    
T  8081595 aaccatcgccggtgttagtatattcca 8081569  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 685 - 795
Target Start/End: Original strand, 56337943 - 56338053
Alignment:
Q  685 tagaaaaggttaagtatcattctttgtggtggatgaaagctaacaatgccaactttgtttatggcacaagtagatggtggtcggacccgttactttgttt 784  Q
    |||| |||||||| |||  ||||||||||||| | ||||||||||||||||  |||||||||||  |    |||||||||| ||||| ||| ||||||||    
T  56337943 tagataaggttaaatatacttctttgtggtggctaaaagctaacaatgccacttttgtttatggttctcaaagatggtggttggaccggttgctttgttt 56338042  T
Q  785 gggtatcgact 795  Q
    |||||||||||    
T  56338043 gggtatcgact 56338053  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 413
Target Start/End: Complemental strand, 49039543 - 49039431
Alignment:
Q  302 cccgtgagcataattcagttggcagagacatgccttattatatgcagg--ttggagttcgaacctcagataccccgcttattcacattgaaaaaaggcga 399  Q
    ||||||||||||  ||||||||||| ||||||| || |||||||||||   ||| ||||||||| | || ||||| ||||||||| ||| ||||||| ||    
T  49039543 cccgtgagcatagctcagttggcagggacatgcattgttatatgcagggactggggttcgaaccccggacaccccacttattcaccttg-aaaaaggtga 49039445  T
Q  400 attctaaccactag 413  Q
    |||||| |||||||    
T  49039444 attctagccactag 49039431  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 302 - 384
Target Start/End: Complemental strand, 15640542 - 15640457
Alignment:
Q  302 cccgtgagcataattcagttggcagagaca-tgccttattatatgcag-gtt-ggagttcgaacctcagataccccgcttattcac 384  Q
    ||||||||||||  |||||||||||||||| ||| ||||||||||||| ||| || |||||||||||||| ||||| |||||||||    
T  15640542 cccgtgagcatatctcagttggcagagacaatgcattattatatgcagtgttcggggttcgaacctcagacaccccacttattcac 15640457  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 301 - 412
Target Start/End: Original strand, 34684564 - 34684674
Alignment:
Q  301 tcccgtgagcataattcagttggcagagacatgccttattatatgcag--gttggagttcgaacctcagataccccgcttattcacattgaaaaaaggcg 398  Q
    |||||||||||||||||| |||| || |  || | |||||||||||||  |||||| ||||||||||||| ||||| ||||||||| ||   | |||| |    
T  34684564 tcccgtgagcataattcaattggtaggggaatacattattatatgcagaggttggaattcgaacctcagacaccccacttattcacctt---ataaggtg 34684660  T
Q  399 aattctaaccacta 412  Q
    ||||||||||||||    
T  34684661 aattctaaccacta 34684674  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 354 - 422
Target Start/End: Original strand, 39293579 - 39293647
Alignment:
Q  354 agttcgaacctcagataccccgcttattcacattgaaaaaaggcgaattctaaccactagactccttga 422  Q
    ||||||||||||||| | ||| ||||||||| ||||||||||| |||||||| | |||||||| |||||    
T  39293579 agttcgaacctcagacatcccacttattcaccttgaaaaaaggtgaattctagctactagactacttga 39293647  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 304 - 413
Target Start/End: Original strand, 49319392 - 49319503
Alignment:
Q  304 cgtgagcataattcagttggcagagacatgccttattatatgca--ggttggagttcgaacctcagataccccgcttattcacattgaaaaaaggcgaat 401  Q
    ||||||||||  ||||||||||  ||||||| ||||||||||||  ||| || |||| |||| | || ||||| ||||||||| ||||||||||| ||||    
T  49319392 cgtgagcatagctcagttggcatggacatgcattattatatgcaggggtcggggttccaaccccggacaccccacttattcaccttgaaaaaaggtgaat 49319491  T
Q  402 tctaaccactag 413  Q
    | || |||||||    
T  49319492 tatagccactag 49319503  T

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Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 302 - 423
Target Start/End: Complemental strand, 54854277 - 54854155
Alignment:
Q  302 cccgtgagcataattcagttggcagagacatgccttattatatgca--ggttggagttcgaacctcagataccccgcttattcacattgaaaaaaggcga 399  Q
    ||||||||||||  ||||||||||| ||||||| | ||||||||||  || ||| ||||||||| | || | | | ||||||||| ||||||||| | ||    
T  54854277 cccgtgagcatagctcagttggcagggacatgcataattatatgcaggggctggggttcgaaccccggacatcacacttattcaccttgaaaaaa-gtga 54854179  T
Q  400 attctaaccactagactccttgac 423  Q
    |||||| |||||||||| ||||||    
T  54854178 attctagccactagactacttgac 54854155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 316 - 413
Target Start/End: Complemental strand, 21023435 - 21023338
Alignment:
Q  316 tcagttggcagagacatgccttattatatgcagg-ttggagttcgaacctcagataccccgcttattcacattgaaaaaaggcgaattctaaccactag 413  Q
    |||||||||||| |||||| || |||||| | || |||| ||||||||| | || ||||| ||||||||| |||||||| || ||||||||||||||||    
T  21023435 tcagttggcagaaacatgcattgttatatccggggttggggttcgaacccccgacaccccacttattcaccttgaaaaa-ggtgaattctaaccactag 21023338  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 759 - 800
Target Start/End: Complemental strand, 41381594 - 41381553
Alignment:
Q  759 tggtggtcggacccgttactttgtttgggtatcgactaactt 800  Q
    |||||||| ||||||||||||||||||||||| |||||||||    
T  41381594 tggtggtcagacccgttactttgtttgggtattgactaactt 41381553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 302 - 363
Target Start/End: Original strand, 9062173 - 9062236
Alignment:
Q  302 cccgtgagcataattcagttggcagagacatgccttattatatgca--ggttggagttcgaacc 363  Q
    |||||||||||| || ||||||||| ||||||| ||||||||||||  |||||| |||||||||    
T  9062173 cccgtgagcatagtttagttggcagggacatgcattattatatgcaagggttggggttcgaacc 9062236  T

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Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 301 - 393
Target Start/End: Complemental strand, 18741016 - 18740921
Alignment:
Q  301 tcccgtgagcataattcagttggcagagacatgccttattatatgca--ggttggagttcgaacctcagata-ccccgcttattcacattgaaaaa 393  Q
    |||||| |||| || |||||||||||||| |||| ||||||||||||  ||| |||||||||||| || | | |||| ||||||||| ||||||||    
T  18741016 tcccgtaagcacaactcagttggcagagatatgcattattatatgcaggggtcggagttcgaaccccaaacacccccacttattcaccttgaaaaa 18740921  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 328 - 385
Target Start/End: Original strand, 44272959 - 44273018
Alignment:
Q  328 gacatgccttattatatgcagg--ttggagttcgaacctcagataccccgcttattcaca 385  Q
    ||||||| ||||||||||||||  | |||||||||||||| |||||||| ||||||||||    
T  44272959 gacatgcattattatatgcaggggtcggagttcgaacctcggataccccacttattcaca 44273018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 849 - 897
Target Start/End: Original strand, 56338111 - 56338159
Alignment:
Q  849 agtacaccttgtgctatagagaattcatcgccgttgttaatatattcca 897  Q
    |||||||||||||||| |||| |||||  ||||||||||||||||||||    
T  56338111 agtacaccttgtgctaaagaggattcactgccgttgttaatatattcca 56338159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 349
Target Start/End: Complemental strand, 41492596 - 41492549
Alignment:
Q  302 cccgtgagcataattcagttggcagagacatgccttattatatgcagg 349  Q
    ||||||||||||  ||||||||||| ||||||| ||||||||||||||    
T  41492596 cccgtgagcatagctcagttggcagggacatgcattattatatgcagg 41492549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 336 - 412
Target Start/End: Original strand, 47416499 - 47416576
Alignment:
Q  336 ttattatatgcagg--ttggagttcgaacctcagataccccgcttattcacattgaaaaaaggcgaattctaaccacta 412  Q
    ||||||||||||||  |||| ||||||| ||| || ||||| ||||||||| |||||||| || |||||||||||||||    
T  47416499 ttattatatgcaggggttggggttcgaatctcggacaccccacttattcactttgaaaaa-ggtgaattctaaccacta 47416576  T

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Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 756 - 791
Target Start/End: Complemental strand, 53569633 - 53569598
Alignment:
Q  756 agatggtggtcggacccgttactttgtttgggtatc 791  Q
    ||||||||||||||||| ||||||||||||||||||    
T  53569633 agatggtggtcggaccctttactttgtttgggtatc 53569598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 756 - 812
Target Start/End: Complemental strand, 55261614 - 55261556
Alignment:
Q  756 agatggtggtcggacccgttactttgtttgggtatcgactaac--ttatttttgtaatt 812  Q
    |||||||||| |||||||||||||||  |||||||||||| ||  ||||||||||||||    
T  55261614 agatggtggttggacccgttactttgactgggtatcgactgacctttatttttgtaatt 55261556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 756 - 794
Target Start/End: Complemental strand, 9690046 - 9690008
Alignment:
Q  756 agatggtggtcggacccgttactttgtttgggtatcgac 794  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  9690046 agatggtggtcgaaccctttactttgtttgggtatcgac 9690008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 304 - 349
Target Start/End: Complemental strand, 4419782 - 4419737
Alignment:
Q  304 cgtgagcataattcagttggcagagacatgccttattatatgcagg 349  Q
    ||||||||||| ||||||| ||||||||||| || |||||||||||    
T  4419782 cgtgagcataactcagttgtcagagacatgcattgttatatgcagg 4419737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 300 - 349
Target Start/End: Original strand, 27921891 - 27921940
Alignment:
Q  300 ttcccgtgagcataattcagttggcagagacatgccttattatatgcagg 349  Q
    ||||||||||||||  |||||||| || ||||||| ||||||||||||||    
T  27921891 ttcccgtgagcatagctcagttggtagggacatgcattattatatgcagg 27921940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 303 - 348
Target Start/End: Original strand, 53335306 - 53335351
Alignment:
Q  303 ccgtgagcataattcagttggcagagacatgccttattatatgcag 348  Q
    |||||||||||||||||||||||| ||||||| |  ||||||||||    
T  53335306 ccgtgagcataattcagttggcagcgacatgcatcgttatatgcag 53335351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 275; Significance: 1e-153; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 563 - 897
Target Start/End: Original strand, 38076705 - 38077039
Alignment:
Q  563 tggtgggtcgacgaagcgccggacaatcatgcaaatgctttggctcttgtgtgtatggattgtttgacacgaaagaaataatagaattttcaataataca 662  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  38076705 tggtgggtcgacgaagcgtcggacaatcatgcaaatgttttggctcttgtgtgtatggattgtttggcacgaaagaaataatagaattttcaataataca 38076804  T
Q  663 caacttactatgatagatcttgtagaaaaggttaagtatcattctttgtggtggatgaaagctaacaatgccaactttgtttatggcacaagtagatggt 762  Q
    |||||| ||||||||||||||||||||||||| |||||| |||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  38076805 caacttgctatgatagatcttgtagaaaaggtgaagtataattcattgtggtggctgaaagctaacaatgccaactttgtttatggcacgagtagatggt 38076904  T
Q  763 ggtcggacccgttactttgtttgggtatcgactaacttatttttgtaattatgtagtgactgtttattctttggggtgacctctctagtacaccttgtgc 862  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||| |||||||    
T  38076905 ggtcggatccgttactttgtttgggtatctactaacttatttttgtaattatgtagtgactgtttgttctttgggatgacctctttagtacatcttgtgc 38077004  T
Q  863 tatagagaattcatcgccgttgttaatatattcca 897  Q
    |||||||||||||||||||||||||||||||||||    
T  38077005 tatagagaattcatcgccgttgttaatatattcca 38077039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 563 - 894
Target Start/End: Complemental strand, 14746971 - 14746640
Alignment:
Q  563 tggtgggtcgacgaagcgccggacaatcatgcaaatgctttggctcttgtgtgtatggattgtttgacacgaaagaaataatagaattttcaataataca 662  Q
    ||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||     
T  14746971 tggtgggtcaatgaagcggcggacaatcatgcaaatgctttggctcttgtgtgtatgggttgtttgccacgaaagaaataatagaattttcaataatact 14746872  T
Q  663 caacttactatgatagatcttgtagaaaaggttaagtatcattctttgtggtggatgaaagctaacaatgccaactttgtttatggcacaagtagatggt 762  Q
     | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  14746871 gagcttactatgatagatcttgtagaaaaggttaagtatcattctttgtggtggctgaaagctaacaatgccaactttgtttatggcacgagtagatggt 14746772  T
Q  763 ggtcggacccgttactttgtttgggtatcgactaacttatttttgtaattatgtagtgactgtttattctttggggtgacctctctagtacaccttgtgc 862  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||    
T  14746771 ggtcggacccgttactttgtttgggtatcgactaacttatttttgtaattttgtagtgactgtttgttctttggggtgacctctttagtacaccttgtgc 14746672  T
Q  863 tatagagaattcatcgccgttgttaatatatt 894  Q
    ||| |||| ||||||| |||||||||||||||    
T  14746671 tattgagagttcatcgtcgttgttaatatatt 14746640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 296 - 412
Target Start/End: Original strand, 35498389 - 35498505
Alignment:
Q  296 ttttttcccgtgagcataattcagttggcagagacatgccttattatatgca--ggttggagttcgaacctcagataccccgcttattcacattgaaaaa 393  Q
    |||| |||||| ||||||| ||||||||||| ||||||| ||||||||||||  |||||| |||| ||| || || ||||| ||||||||| ||| ||||    
T  35498389 ttttgtcccgtaagcataactcagttggcagggacatgcattattatatgcaggggttgg-gttcaaacttcggacaccccacttattcactttg-aaaa 35498486  T
Q  394 aggcgaattctaaccacta 412  Q
    ||| |||||||| ||||||    
T  35498487 aggtgaattctagccacta 35498505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 300 - 349
Target Start/End: Original strand, 7465461 - 7465510
Alignment:
Q  300 ttcccgtgagcataattcagttggcagagacatgccttattatatgcagg 349  Q
    ||||||||||||||  ||||||||||||||||||| ||||||||||||||    
T  7465461 ttcccgtgagcatagctcagttggcagagacatgcattattatatgcagg 7465510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 756 - 860
Target Start/End: Original strand, 27724620 - 27724724
Alignment:
Q  756 agatggtggtcggacccgttactttgtttgggtatcgactaacttatttttgtaattatgtagtgactgtttattctttggggtgacctctctagtacac 855  Q
    |||||||||||||| || |||||||||||||||||||||| |||| ||  |||| |||||| || |   ||| || || ||||||| ||||||||||||     
T  27724620 agatggtggtcggatcctttactttgtttgggtatcgactgactttttactgtacttatgttgtaaacatttctttttcggggtgaactctctagtacat 27724719  T
Q  856 cttgt 860  Q
    |||||    
T  27724720 cttgt 27724724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 302 - 423
Target Start/End: Complemental strand, 27726467 - 27726345
Alignment:
Q  302 cccgtgagcataattcagttggcagagacatgccttattatatgcag--gttggagttcgaacctcagataccccgcttattcacattgaaaaaaggcga 399  Q
    ||||||| ||||  ||||||||||| ||||||| |||||||| ||||  |  || ||||||||||| || |||| |||||||| | ||| |||| || ||    
T  27726467 cccgtgaacatagctcagttggcagggacatgcattattataagcagtggccggggttcgaacctcggacaccctgcttattcgctttggaaaa-ggtga 27726369  T
Q  400 attctaaccactagactccttgac 423  Q
    ||||||||||||||||| ||||||    
T  27726368 attctaaccactagactacttgac 27726345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 302 - 423
Target Start/End: Original strand, 43635585 - 43635707
Alignment:
Q  302 cccgtgagcataattcagttggcagagacatgccttattatatgca--ggttggagttcgaacctcagataccccgcttattcacattgaaaaaaggcga 399  Q
    ||||||||||||| |||||||||||| |||||| || |||||||||  ||| || ||||||||| | || ||||| ||||||||| || | ||| || ||    
T  43635585 cccgtgagcataactcagttggcagaaacatgcattgttatatgcagcggtcggggttcgaaccccggacaccccacttattcacctt-acaaagggtga 43635683  T
Q  400 attctaaccactagactccttgac 423  Q
    |||||| |||||| ||| ||||||    
T  43635684 attctagccactaaactacttgac 43635707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 303 - 423
Target Start/End: Original strand, 32814825 - 32814946
Alignment:
Q  303 ccgtgagcataattcagttggcagagacatgccttattatatgca--ggttggagttcgaacctcagataccccgcttattcacattgaaaaaaggcgaa 400  Q
    |||||||||||  |||||||| || ||||||| ||||||||||||  ||| |||||||||| | | || ||||| |||||||| | | |||||||| |||    
T  32814825 ccgtgagcatagctcagttggtagggacatgcattattatatgcaggggtcggagttcgaatcccggacaccccacttattcata-taaaaaaaggtgaa 32814923  T
Q  401 ttctaaccactagactccttgac 423  Q
    || |||||||| |||| ||||||    
T  32814924 ttttaaccactggactacttgac 32814946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 305 - 413
Target Start/End: Original strand, 44409201 - 44409309
Alignment:
Q  305 gtgagcataattcagttggcagagacatgccttattatatgca--ggttggagttcgaacctcagataccccgcttattcacattgaaaaaaggcgaatt 402  Q
    |||||||||| |||||| |||| ||||||| ||||||||||||  ||| || ||||||||| |  | ||||| ||||||||| ||| ||||||| |||||    
T  44409201 gtgagcataactcagttagcagggacatgcattattatatgcaagggtcggggttcgaacc-cgaacaccccacttattcaccttg-aaaaaggtgaatt 44409298  T
Q  403 ctaaccactag 413  Q
    |||||||||||    
T  44409299 ctaaccactag 44409309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 319 - 422
Target Start/End: Complemental strand, 32309229 - 32309125
Alignment:
Q  319 gttggcagagacatgccttattatatgca--ggttggagttcgaacctcagataccccgcttattcacattgaaaaaaggcgaattctaaccactagact 416  Q
    |||||||| ||||||| || |||||||||  ||| |||||||||| |||||| |||||  |||||||| || |||||| | |||||||| ||||||||||    
T  32309229 gttggcagggacatgcattgttatatgcaggggtcggagttcgaatctcagacaccccagttattcacctt-aaaaaatgtgaattctagccactagact 32309131  T
Q  417 ccttga 422  Q
     |||||    
T  32309130 acttga 32309125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 302 - 346
Target Start/End: Complemental strand, 32514734 - 32514690
Alignment:
Q  302 cccgtgagcataattcagttggcagagacatgccttattatatgc 346  Q
    |||||||||||| |||||||||||||||||||  |||||||||||    
T  32514734 cccgtgagcatagttcagttggcagagacatgtattattatatgc 32514690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 382
Target Start/End: Complemental strand, 45268024 - 45267942
Alignment:
Q  302 cccgtgagcataattcagttggcagagacatgccttattatatgcag--gttggagttcgaacctcagataccccgcttattc 382  Q
    ||||||||||||  |||||||||||||||||   |||||||||||||  || ||||||||||||  ||| ||||| |||||||    
T  45268024 cccgtgagcatagctcagttggcagagacatatattattatatgcaggagtcggagttcgaaccatagacaccccacttattc 45267942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 856 - 894
Target Start/End: Original strand, 4939025 - 4939063
Alignment:
Q  856 cttgtgctatagagaattcatcgccgttgttaatatatt 894  Q
    |||||||||| |||| |||||||||||||||||||||||    
T  4939025 cttgtgctatcgagagttcatcgccgttgttaatatatt 4939063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 334
Target Start/End: Complemental strand, 14772435 - 14772401
Alignment:
Q  300 ttcccgtgagcataattcagttggcagagacatgc 334  Q
    ||||||||||||||| |||||||||||||||||||    
T  14772435 ttcccgtgagcataactcagttggcagagacatgc 14772401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 334
Target Start/End: Complemental strand, 15222887 - 15222853
Alignment:
Q  300 ttcccgtgagcataattcagttggcagagacatgc 334  Q
    ||||||||||||||| |||||||||||||||||||    
T  15222887 ttcccgtgagcataactcagttggcagagacatgc 15222853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 395
Target Start/End: Original strand, 19924778 - 19924859
Alignment:
Q  316 tcagttggcagagacatgccttattatatgcag--gttggagttcgaacctcagataccccgcttattcacattgaaaaaag 395  Q
    ||||||||||| ||||||| |||||||||||||  ||  ||||||||| | || ||||||| ||||||||| || |||||||    
T  19924778 tcagttggcagggacatgcattattatatgcagaagtgagagttcgaatcccatataccccacttattcaccttaaaaaaag 19924859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 301 - 423
Target Start/End: Original strand, 11808034 - 11808158
Alignment:
Q  301 tcccgtgagcataattcagttggcagagacatgccttattatatgca--ggttggagttcgaacctcagataccccgcttattcacattgaaaaaaggcg 398  Q
    |||||||||| ||  ||| |||| || ||||||| || |||||||||  ||| || ||||||||| | || ||||| ||||||||| ||  ||||| | |    
T  11808034 tcccgtgagcttagctcaattggtagggacatgcattgttatatgcaggggtcggggttcgaaccccggacaccccacttattcaccttagaaaaacgtg 11808133  T
Q  399 aattctaaccactagactccttgac 423  Q
    ||||||||| |||||||| ||||||    
T  11808134 aattctaacaactagactacttgac 11808158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 306 - 412
Target Start/End: Complemental strand, 43712407 - 43712300
Alignment:
Q  306 tgagcataattcagttggcagagacatgccttattatatgcagg--ttggagttcgaacctcagataccccgcttattcacattgaaaaaaggcgaattc 403  Q
    ||||||||| |||||||| || ||||||| || |||||| ||||  | || ||||||||||| |||||||| ||||| | | ||| ||||||| ||||||    
T  43712407 tgagcataactcagttggtagggacatgcattgttatatacaggggtcggggttcgaacctcggataccccacttatcctccttg-aaaaaggagaattc 43712309  T
Q  404 taaccacta 412  Q
    || ||||||    
T  43712308 tagccacta 43712300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 563 - 897
Target Start/End: Original strand, 856085 - 856419
Alignment:
Q  563 tggtgggtcgacgaagcgccggacaatcatgcaaatgctttggctcttgtgtgtatggattgtttgacacgaaagaaataatagaattttcaataataca 662  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||| ||     
T  856085 tggtgggtcgacaaagcgccggacaatcatgcaagtgctttggctcttgtgtgtatggattgattggcacgaaagaaataatataattttcaataacacc 856184  T
Q  663 caacttactatgatagatcttgtagaaaaggttaagtatcattctttgtggtggatgaaagctaacaatgccaactttgtttatggcacaagtagatggt 762  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  856185 caacttactatgatagatcttgtagaaaaggttaagtataattcattgtggtggctgaaagctaacaatgccaactttgtttatggcacgagtagatggt 856284  T
Q  763 ggtcggacccgttactttgtttgggtatcgactaacttatttttgtaattatgtagtgactgtttattctttggggtgacctctctagtacaccttgtgc 862  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||    
T  856285 ggtcggactcgttactttgtttgggtatcgactaacttgtttttgtaattatgtagtgagtgtttgttctttggggtgacctctttagtacaccttgtgc 856384  T
Q  863 tatagagaattcatcgccgttgttaatatattcca 897  Q
    |||||||||||||||||||||||||||||||||||    
T  856385 tatagagaattcatcgccgttgttaatatattcca 856419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 563 - 897
Target Start/End: Complemental strand, 3704546 - 3704213
Alignment:
Q  563 tggtgggtcgacgaagcgccggacaatcatgcaaatgctttggctcttgtgtgtatggattgtttgacacgaaagaaataatagaattttcaataataca 662  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  3704546 tggtgggtcgacgaagcgccggacaatcatgcaaatgctttggctcttgtgtgtatggattatttggcacgaaagaaataatagaattttcaataataca 3704447  T
Q  663 caacttactatgatagatcttgtagaaaaggttaagtatcattctttgtggtggatgaaagctaacaatgccaactttgtttatggcacaagtagatggt 762  Q
    |||||||||||||||||||||||| |||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||  |||||||||    
T  3704446 caacttactatgatagatcttgtaaaaaaggttaagtataattcattgtggtggctgaaagctaacaatgccaactttgtttatggcacgggtagatggt 3704347  T
Q  763 ggtcggacccgttactttgtttgggtatcgactaacttatttttgtaattatgtagtgactgtttattctttggggtgacctctctagtacaccttgtgc 862  Q
    ||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||    
T  3704346 ggtcggacccgttactttgtttgggtatcgactca-ttttttttgtaattatgtagtgactgtttgttctttggggtgacctctttaatacaccttgtgc 3704248  T
Q  863 tatagagaattcatcgccgttgttaatatattcca 897  Q
    |||||||||||||||||||||||||||||| ||||    
T  3704247 tatagagaattcatcgccgttgttaatataatcca 3704213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 159; E-Value: 4e-84
Query Start/End: Original strand, 563 - 897
Target Start/End: Original strand, 34832885 - 34833219
Alignment:
Q  563 tggtgggtcgacgaagcgccggacaatcatgcaaatgctttggctcttgtgtgtatggattgtttgacacgaaagaaataatagaattttcaataataca 662  Q
    |||||||||||| ||||| |||| | ||||||| ||| ||||||| |||||||| ||||| |||||  | ||||||||||||||||| ||||| ||| |     
T  34832885 tggtgggtcgacaaagcgtcggatattcatgcagatgatttggcttttgtgtgtgtggatagtttggaatgaaagaaataatagaatattcaagaattcc 34832984  T
Q  663 caacttactatgatagatcttgtagaaaaggttaagtatcattctttgtggtggatgaaagctaacaatgccaactttgtttatggcacaagtagatggt 762  Q
    ||| ||| |||| | ||||||||||||||||||||||||||||| ||||||||| ||||||| ||||| ||||| |||||||| |||||   ||||||||    
T  34832985 caagttaatatgttcgatcttgtagaaaaggttaagtatcattcattgtggtggctgaaagccaacaacgccaattttgtttacggcacgtttagatggt 34833084  T
Q  763 ggtcggacccgttactttgtttgggtatcgactaacttatttttgtaattatgtagtgactgtttattctttggggtgacctctctagtacaccttgtgc 862  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||   |||| ||||| |||||||||||| | ||| |||||||||||||||    
T  34833085 ggtcggacccgttactttgtttgggtatcgactgacttgtttttgtaattattctgtgaatgtttgttctttggggtggcttctgtagtacaccttgtgc 34833184  T
Q  863 tatagagaattcatcgccgttgttaatatattcca 897  Q
    |  ||||| | || |||||||||||||||||||||    
T  34833185 ttcagagagtacaccgccgttgttaatatattcca 34833219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 100; E-Value: 7e-49
Query Start/End: Original strand, 687 - 897
Target Start/End: Complemental strand, 39072831 - 39072621
Alignment:
Q  687 gaaaaggttaagtatcattctttgtggtggatgaaagctaacaatgccaactttgtttatggcacaagtagatggtggtcggacccgttactttgtttgg 786  Q
    |||||||||||| || |||| || |||||| ||||||||||||||| ||| |||||||||||||| | |||||||| |||||||||||||||||||||||    
T  39072831 gaaaaggttaagcataattccttttggtggctgaaagctaacaatgtcaagtttgtttatggcacgattagatggtagtcggacccgttactttgtttgg 39072732  T
Q  787 gtatcgactaacttattt-ttgtaattatgtagtgactgtttattctttggggtgacctctctagtacaccttgtgctatagagaattcatcgccgttgt 885  Q
     |||||||| || | ||| ||||||||||   |||||||||| |||||||||||| | ||| ||||||||||||||||| |||| |  ||||||||||||    
T  39072731 atatcgactgacctgtttattgtaattatactgtgactgtttgttctttggggtggcttctttagtacaccttgtgctaaagagga-acatcgccgttgt 39072633  T
Q  886 taatatattcca 897  Q
    ||||||||||||    
T  39072632 taatatattcca 39072621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 681 - 895
Target Start/End: Complemental strand, 13352311 - 13352095
Alignment:
Q  681 cttgtagaaaaggttaagtatcattctttgtggtggatgaaagctaacaatgccaactttgtttatggcacaagtagatggtggtcggacccgttacttt 780  Q
    ||||||||||||||||| ||| ||||  | |||||| | |||||| |||||| ||| |||||||||| ||    ||  | |||||||||||||||||| |    
T  13352311 cttgtagaaaaggttaactataattccatttggtggcttaaagctcacaatgtcaattttgtttatgacaatcataactagtggtcggacccgttactat 13352212  T
Q  781 gtttgggtatcgactaacttat-ttttgtaattatgtagtgactgttt-attctttggggtgacctctctagtacaccttgtgctatagagaattcatcg 878  Q
    ||||||||||||||| || |||  ||| ||||||| ||||| ||||||  || |||||| ||||||||  | |||||||| |||| ||||| || |||||    
T  13352211 gtttgggtatcgactgacctatcctttataattatatagtggctgtttgtttttttgggatgacctcttcaatacaccttatgctttagaggatccatcg 13352112  T
Q  879 ccgttgttaatatattc 895  Q
    ||| |||||||||||||    
T  13352111 ccggtgttaatatattc 13352095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 804 - 897
Target Start/End: Original strand, 20930989 - 20931082
Alignment:
Q  804 tttgtaattatgtagtgactgtttattctttggggtgacctctctagtacaccttgtgctatagagaattcatcgccgttgttaatatattcca 897  Q
    |||||||||||  ||||||||||| || ||||||||||||||| |||||||||||||||| |||||||   |||| || |||||||||||||||    
T  20930989 tttgtaattatacagtgactgtttgttttttggggtgacctctttagtacaccttgtgctctagagaaactatcgtcggtgttaatatattcca 20931082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 300 - 423
Target Start/End: Complemental strand, 39334981 - 39334857
Alignment:
Q  300 ttcccgtgagcataattcagttggcagagacatgccttattatatgca--ggttggagttcgaacctcagataccccgcttattcacattgaaaaaaggc 397  Q
    ||||||||||||||| ||||||||||| ||||||| ||||||||| ||  || ||| ||||||||  |||| | ||| ||||||||| ||| |||||||     
T  39334981 ttcccgtgagcataactcagttggcagggacatgcattattatatacaggggctggggttcgaactccagacatcccacttattcactttg-aaaaaggt 39334883  T
Q  398 gaattctaaccactagactccttgac 423  Q
    |||||||| |||||||||| ||||||    
T  39334882 gaattctagccactagactacttgac 39334857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 302 - 423
Target Start/End: Original strand, 34107271 - 34107393
Alignment:
Q  302 cccgtgagcataattcagttggcagagacatgccttattatatgca--ggttggagttcgaacctcagataccccgcttattcacattgaaaaaaggcga 399  Q
    ||||||||||||  ||||||||||| ||||||  | ||||||||||  |||||  ||||||||  |||| ||||| ||||||||| ||| ||||| | ||    
T  34107271 cccgtgagcatagctcagttggcagggacatgtataattatatgcaggggttgaggttcgaactccagacaccccacttattcaccttg-aaaaatgtga 34107369  T
Q  400 attctaaccactagactccttgac 423  Q
    |||||| |||||||||| ||||||    
T  34107370 attctagccactagactacttgac 34107393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 316 - 413
Target Start/End: Complemental strand, 44132647 - 44132548
Alignment:
Q  316 tcagttggcagagacatgccttattatatgc--aggttggagttcgaacctcagataccccgcttattcacattgaaaaaaggcgaattctaaccactag 413  Q
    ||||||||||||||||||| || ||||||||  |||| || ||||||||  |||| |||||| |||||||  |||||||||||  ||| |||||||||||    
T  44132647 tcagttggcagagacatgcattgttatatgcagaggtcggggttcgaactccagacaccccgtttattcatcttgaaaaaaggtaaatactaaccactag 44132548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 416
Target Start/End: Original strand, 1244568 - 1244681
Alignment:
Q  304 cgtgagcataattcagttggcagagacatgccttattatatgca--ggttggagttcgaacctcagataccccgcttattcacattgaaaaaaggcgaat 401  Q
    |||||||||| |||||||||||| ||||| | ||  ||||||||  ||| || ||||||||| | || ||||| ||||||||| ||| ||||||| ||||    
T  1244568 cgtgagcatagttcagttggcagggacatacattgctatatgcaggggtgggggttcgaaccccggacaccccacttattcaccttg-aaaaaggtgaat 1244666  T
Q  402 tctaaccactagact 416  Q
    |||| ||||||||||    
T  1244667 tctagccactagact 1244681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 302 - 423
Target Start/End: Complemental strand, 20942204 - 20942085
Alignment:
Q  302 cccgtgagcataattcagttggcagagacatgccttattatatgcaggt--tggagttcgaacctcagataccccgcttattcacattgaaaaaaggcga 399  Q
    ||||||||||||   |||||||||| ||||||| | |||||||| |||   ||||||||||||| |||| ||| | ||||||||| ||||||||| | ||    
T  20942204 cccgtgagcata---cagttggcagggacatgcataattatatgtaggggatggagttcgaaccccagacacctcacttattcaccttgaaaaaa-gtga 20942109  T
Q  400 attctaaccactagactccttgac 423  Q
    ||||||  ||||||||| ||||||    
T  20942108 attctagtcactagactacttgac 20942085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 301 - 394
Target Start/End: Original strand, 32288372 - 32288467
Alignment:
Q  301 tcccgtgagcataattcagttggcagagacatgccttattatatgcagg--ttggagttcgaacctcagataccccgcttattcacattgaaaaaa 394  Q
    |||||||||| ||  ||||||| |||| |||||| |||||||||| |||  | || ||||||||||| || ||||| ||||||||| |||||||||    
T  32288372 tcccgtgagcgtagctcagttgacagaaacatgcattattatatgtagggatcggggttcgaacctcggacaccccacttattcaccttgaaaaaa 32288467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 304 - 423
Target Start/End: Complemental strand, 38581701 - 38581582
Alignment:
Q  304 cgtgagcataattcagttggcagagacatgccttattatatgc-aggttggagttcgaacctcagataccccgcttattcacattgaaaaaaggcgaatt 402  Q
    ||||||||||| |||||||| |||||||| | ||||||||||| | ||||   |||||||||| || | ||| ||||||||  || |||||||| | |||    
T  38581701 cgtgagcataactcagttggtagagacatacattattatatgcaacgttgagattcgaacctcggacatcccacttattcatctt-aaaaaaggtgtatt 38581603  T
Q  403 ctaaccactagactccttgac 423  Q
    ||||||||||| || ||||||    
T  38581602 ctaaccactaggctacttgac 38581582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 300 - 405
Target Start/End: Original strand, 38807876 - 38807983
Alignment:
Q  300 ttcccgtgagcataattcagttggcagagacatgccttattatatgcagg--ttggagttcgaacctcagataccccgcttattcacattgaaaaaaggc 397  Q
    |||||||||| |||| ||||||||||| ||||||| | ||||||||||||   ||   |||||||| |||| ||| | ||||||||| ||||||||| |     
T  38807876 ttcccgtgagtataactcagttggcagggacatgcataattatatgcagggaatgagattcgaaccccagacaccgcacttattcaccttgaaaaaaagt 38807975  T
Q  398 gaattcta 405  Q
    ||||||||    
T  38807976 gaattcta 38807983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 406
Target Start/End: Original strand, 2057479 - 2057581
Alignment:
Q  303 ccgtgagcataattcagttggcagagacatgccttattatatgcaggttggagttcgaacctcagataccccgcttattcacattgaaaaaaggcgaatt 402  Q
    |||||||||||  ||||||||||| || || | || ||||||||||| | ||||||||| | | || ||||| ||||||||| || |||||||| |||||    
T  2057479 ccgtgagcatagctcagttggcagggatatacattgttatatgcagggtcgagttcgaatcccggacaccccacttattcacctt-aaaaaaggtgaatt 2057577  T
Q  403 ctaa 406  Q
    ||||    
T  2057578 ctaa 2057581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 756 - 791
Target Start/End: Complemental strand, 31265849 - 31265814
Alignment:
Q  756 agatggtggtcggacccgttactttgtttgggtatc 791  Q
    ||||||||||||||||| ||||||||||||||||||    
T  31265849 agatggtggtcggaccctttactttgtttgggtatc 31265814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 349
Target Start/End: Complemental strand, 917388 - 917342
Alignment:
Q  303 ccgtgagcataattcagttggcagagacatgccttattatatgcagg 349  Q
    |||||||| ||| |||||||| |||||||||| ||||||||||||||    
T  917388 ccgtgagcttaactcagttggtagagacatgcattattatatgcagg 917342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 384
Target Start/End: Original strand, 3179320 - 3179405
Alignment:
Q  301 tcccgtgagcataattcagttggcagagacatgccttattatatgcagg--ttggagttcgaacctcagataccccgcttattcac 384  Q
    |||||||||||||| |||||||| |||   |||| ||||||||||||||  | |  |||||||||||||| ||||| |||||||||    
T  3179320 tcccgtgagcataactcagttggtagaacaatgcattattatatgcaggggtcgaggttcgaacctcagacaccccacttattcac 3179405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 384
Target Start/End: Complemental strand, 21970538 - 21970453
Alignment:
Q  302 cccgtgagcataattcagttggcagagaca-tgccttattatatgcagg--ttggagttcgaacctcagataccccgcttattcac 384  Q
    ||||||||||||  ||||||| ||| |||| ||| ||||||||||||||  | || ||||||||| | ||||||||||||||||||    
T  21970538 cccgtgagcatagctcagttgacagggacaatgcattattatatgcagggatcggggttcgaaccccggataccccgcttattcac 21970453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 154
Target Start/End: Original strand, 26545908 - 26545950
Alignment:
Q  112 gtttgattctcttcgatgtcaatttaggtatgttaatttagct 154  Q
    ||||||||||||||||| |||||||||||  ||||||||||||    
T  26545908 gtttgattctcttcgatatcaatttaggtgggttaatttagct 26545950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 349
Target Start/End: Original strand, 34376540 - 34376586
Alignment:
Q  303 ccgtgagcataattcagttggcagagacatgccttattatatgcagg 349  Q
    ||||||| |||||||||||||||| ||||||| || |||||||||||    
T  34376540 ccgtgagtataattcagttggcagggacatgcattgttatatgcagg 34376586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 756 - 793
Target Start/End: Complemental strand, 6823038 - 6823001
Alignment:
Q  756 agatggtggtcggacccgttactttgtttgggtatcga 793  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  6823038 agatggtggtcgaaccctttactttgtttgggtatcga 6823001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 303 - 344
Target Start/End: Complemental strand, 22014754 - 22014713
Alignment:
Q  303 ccgtgagcataattcagttggcagagacatgccttattatat 344  Q
    ||||||||||| |||||||| ||||||||||| |||||||||    
T  22014754 ccgtgagcatagttcagttgacagagacatgcattattatat 22014713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 303 - 384
Target Start/End: Original strand, 44187701 - 44187785
Alignment:
Q  303 ccgtgagcataattcagttggcagaga-catgccttattatatgca--ggttggagttcgaacctcagataccccgcttattcac 384  Q
    ||||||||||| |||||||||||| ||  |||| ||||||||||||  ||| || ||||||||| |||| ||||| |||||||||    
T  44187701 ccgtgagcatagttcagttggcagggataatgcattattatatgcaggggtcggggttcgaaccccagacaccccacttattcac 44187785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 302 - 412
Target Start/End: Complemental strand, 44487865 - 44487754
Alignment:
Q  302 cccgtgagcataattcagttggcagagacatgccttattatatgca--ggttggagttcgaacctcagataccccgcttattcacattgaaaaaaggcga 399  Q
    |||||||| |||  |||||||  || ||||||| ||||||||||||  ||  |||||||||||| | || | ||| ||||||||| || |||||||| ||    
T  44487865 cccgtgagtatagctcagttgatagggacatgcattattatatgcaagggccggagttcgaaccccggacatcccacttattcacctt-aaaaaaggtga 44487767  T
Q  400 attctaaccacta 412  Q
    |||||||||||||    
T  44487766 attctaaccacta 44487754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 756 - 813
Target Start/End: Complemental strand, 45126418 - 45126361
Alignment:
Q  756 agatggtggtcggacccgttactttgtttgggtatcgactaacttatttttgtaatta 813  Q
    ||||||||||| ||||| ||||||| |||||||||||||| || ||||  ||||||||    
T  45126418 agatggtggtcagaccctttactttatttgggtatcgactgacctattgatgtaatta 45126361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 267; Significance: 1e-148; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-148
Query Start/End: Original strand, 563 - 897
Target Start/End: Original strand, 38356012 - 38356346
Alignment:
Q  563 tggtgggtcgacgaagcgccggacaatcatgcaaatgctttggctcttgtgtgtatggattgtttgacacgaaagaaataatagaattttcaataataca 662  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  38356012 tggtgggtcgacgaagcgctggacaatcatgcaaatgctttggctcttgtgtgtatggattgtttggcacgaaagaaataatagaattttcaataataca 38356111  T
Q  663 caacttactatgatagatcttgtagaaaaggttaagtatcattctttgtggtggatgaaagctaacaatgccaactttgtttatggcacaagtagatggt 762  Q
    |||||| ||||||||||||||||||||||| |||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||| | ||| ||||    
T  38356112 caacttgctatgatagatcttgtagaaaagattaagtataattcattgtggtggctgaaagctaacaatgccaactttgtttatggcacgaataggtggt 38356211  T
Q  763 ggtcggacccgttactttgtttgggtatcgactaacttatttttgtaattatgtagtgactgtttattctttggggtgacctctctagtacaccttgtgc 862  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |  ||||||||||||||||| |||||||||||||||    
T  38356212 ggtcggacctgttactttgtttgggtatcgactaacttatttttgtaattatgtaatgactgtatggtctttggggtgacctctttagtacaccttgtgc 38356311  T
Q  863 tatagagaattcatcgccgttgttaatatattcca 897  Q
    |||||||| ||||||||||||||||||||||||||    
T  38356312 tatagagatttcatcgccgttgttaatatattcca 38356346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 563 - 897
Target Start/End: Original strand, 52194930 - 52195264
Alignment:
Q  563 tggtgggtcgacgaagcgccggacaatcatgcaaatgctttggctcttgtgtgtatggattgtttgacacgaaagaaataatagaattttcaataataca 662  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||||| | ||||| |||||  ||||||||||| ||||||||||||| |||||     
T  52194930 tggtggatcgacaaagcgccggacaatcatgcaaatgctttggctcttgtgtatgtggatagtttggaacgaaagaaatgatagaattttcaacaatacc 52195029  T
Q  663 caacttactatgatagatcttgtagaaaaggttaagtatcattctttgtggtggatgaaagctaacaatgccaactttgtttatggcacaagtagatggt 762  Q
    ||||||| ||||||||||||||||||||||||||||||| |||| ||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  52195030 caacttaatatgatagatcttgtagaaaaggttaagtataattcattgcggtggctgaaagctaacaatgccaactttgtttatggcacgagtagatggt 52195129  T
Q  763 ggtcggacccgttactttgtttgggtatcgactaacttatttttgtaattatgtagtgactgtttattctttggggtgacctctctagtacaccttgtgc 862  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||| | || |||||||||||||||    
T  52195130 ggtcggacccgttactttttttgggtatcgactaacttgtttttgtaattatgcagtgactgtttgttctttggggtgatcgctttagtacaccttgtgc 52195229  T
Q  863 tatagagaattcatcgccgttgttaatatattcca 897  Q
    ||||||||||||| ||| |||||||||||||||||    
T  52195230 tatagagaattcaccgcagttgttaatatattcca 52195264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 150; E-Value: 1e-78
Query Start/End: Original strand, 563 - 896
Target Start/End: Complemental strand, 55366430 - 55366097
Alignment:
Q  563 tggtgggtcgacgaagcgccggacaatcatgcaaatgctttggctcttgtgtgtatggattgtttgacacgaaagaaataatagaattttcaataataca 662  Q
    |||||||||||| |||||||||| | ||||||| ||| ||||||| |||||||| ||||| |||||  ||||||||||||||||||  ||||| ||| |     
T  55366430 tggtgggtcgacaaagcgccggatattcatgcagatgatttggcttttgtgtgtgtggatagtttggaacgaaagaaataatagaacattcaagaattcc 55366331  T
Q  663 caacttactatgatagatcttgtagaaaaggttaagtatcattctttgtggtggatgaaagctaacaatgccaactttgtttatggcacaagtagatggt 762  Q
    ||| ||| |||| | ||||||||||||||||||||||||||||| ||||||||| ||||||| ||||| ||||| |||||||| |||||     ||||||    
T  55366330 caagttaatatgttcgatcttgtagaaaaggttaagtatcattcattgtggtggctgaaagccaacaacgccaattttgtttacggcacgttccgatggt 55366231  T
Q  763 ggtcggacccgttactttgtttgggtatcgactaacttatttttgtaattatgtagtgactgtttattctttggggtgacctctctagtacaccttgtgc 862  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||   |||| ||||| |||||||||||| | ||| |||||||||||||||    
T  55366230 ggtcggacccgttactttgtttgggtatcgactgacttgtttttgtaattattctgtgaatgtttgttctttggggtggcttctgtagtacaccttgtgc 55366131  T
Q  863 tatagagaattcatcgccgttgttaatatattcc 896  Q
    |  | ||| | || ||||||||||||||||||||    
T  55366130 ttcaaagagtacaccgccgttgttaatatattcc 55366097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 132; E-Value: 6e-68
Query Start/End: Original strand, 631 - 894
Target Start/End: Original strand, 53272610 - 53272872
Alignment:
Q  631 acgaaagaaataatagaattttcaataatacacaacttactatgatagatcttgtagaaaaggttaagtatcattctttgtggtggatgaaagctaacaa 730  Q
    |||||| |||||||||||| ||||| | ||| || |||| |||||||||||||| || || |||||| ||| |||  ||||||||| |||||||||||||    
T  53272610 acgaaaaaaataatagaatattcaagattactcatcttaatatgatagatcttgcaggaa-ggttaactataatttattgtggtggctgaaagctaacaa 53272708  T
Q  731 tgccaactttgtttatggcacaagtagatggtggtcggacccgttactttgtttgggtatcgactaacttatttttgtaattatgtagtgactgtttatt 830  Q
    ||||||||||||||||||||| |||||||||||||||||| | ||||||| |||| |||||||||||||| |||||||||||||  |||||||| || ||    
T  53272709 tgccaactttgtttatggcacgagtagatggtggtcggacacattactttatttgagtatcgactaacttgtttttgtaattattcagtgactgcttgtt 53272808  T
Q  831 ctttggggtgacctctctagtacaccttgtgctatagagaattcatcgccgttgttaatatatt 894  Q
     || |||||| ||||| |||||||||||||| ||||||||| ||| ||||||||||||||||||    
T  53272809 attaggggtggcctctttagtacaccttgtgttatagagaagtcaccgccgttgttaatatatt 53272872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 576 - 895
Target Start/End: Original strand, 1660393 - 1660706
Alignment:
Q  576 aagcgccggacaatcatgcaaatgctttggctcttgtgtgtatggattgtttgacacgaaagaaataatagaattttcaataatacacaacttactatga 675  Q
    |||| ||||||| ||||||| ||||||||| | ||||||||  |||| |||||  |||||||||||||| |||| ||||| ||||| ||||||| |||||    
T  1660393 aagcaccggacattcatgcagatgctttggtttttgtgtgt--ggatagtttggaacgaaagaaataatggaatattcaagaatacccaacttaatatga 1660490  T
Q  676 tagatcttgtagaaaaggttaagtatcattctttgtggtggat-gaaagctaacaatgccaactttgtttatggcacaagtagatggtggtcggacccgt 774  Q
    |||||||||||||||||||||||||| |||| ||||||||| |  ||||||||||||| ||||||| |||||||||| ||||||||||| ||  | ||||    
T  1660491 tagatcttgtagaaaaggttaagtataattcattgtggtggctaaaaagctaacaatggcaactttatttatggcacgagtagatggtgatcaaatccgt 1660590  T
Q  775 tactttgtttgggtatcgactaacttatttttgtaattatgtagtgactgtttattctttggggtgacctctctagtacaccttgtgctatagagaattc 874  Q
    ||| |||||||| |||| ||| |||| |||||||||||||      |||| || ||||||||||||   ||| |||||||| || ||||| | || ||||    
T  1660591 tac-ttgtttggatatcaactgacttgtttttgtaattat----acactgcttgttctttggggtggtttctttagtacactttatgctaaataggattc 1660685  T
Q  875 atcgccgttgttaatatattc 895  Q
    || ||||||||||||||||||    
T  1660686 attgccgttgttaatatattc 1660706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 685 - 894
Target Start/End: Original strand, 36624258 - 36624469
Alignment:
Q  685 tagaaaaggttaagtatcattctttgtggtggatgaaagctaacaatgccaactttgtttatggcacaagtagatggtggtcggacccgttactttgttt 784  Q
    |||||||||| || ||||| ||| | |||||| | |||||| |||||||||| |||||||||||||    ||  ||||||||||||| ||||||||||||    
T  36624258 tagaaaaggtgaaatatcaatctctttggtggcttaaagctcacaatgccaattttgtttatggcaatcataactggtggtcggacctgttactttgttt 36624357  T
Q  785 gggtatcgactaacttat-ttttgtaattatgtagtgactgtttattctt-tggggtgacctctctagtacaccttgtgctatagagaattcatcgccgt 882  Q
    ||||||||||| || | |  |||||||||||  ||||||||||| ||||| ||||||| |||||  |||||||||||||||  |||||||||||||||      
T  36624358 gggtatcgactgacctctcctttgtaattatacagtgactgtttgttcttatggggtggcctcttgagtacaccttgtgctgaagagaattcatcgccag 36624457  T
Q  883 tgttaatatatt 894  Q
    | ||||||||||    
T  36624458 tattaatatatt 36624469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 679 - 859
Target Start/End: Complemental strand, 18380759 - 18380576
Alignment:
Q  679 atcttgtagaaaaggttaagtatcattctttgtggtggatgaaagctaacaatgccaactttgtttatggcacaagtagatggtggtcggacccgttact 778  Q
    ||||| ||||||| ||||| ||||||||| | |||||| | ||| || |||||||||| |||||||||||||    ||  ||||||||| ||||||||||    
T  18380759 atcttttagaaaaagttaaatatcattctctctggtggcttaaatctcacaatgccaattttgtttatggcaatcataattggtggtcgaacccgttact 18380660  T
Q  779 ttgtttgggtatcgactaacttat-ttttgtaattatgtagtgactgtttattc--tttggggtgacctctctagtacaccttg 859  Q
     |||||||||||| ||| || | |  ||||||||||   | ||| ||||| |||  ||||||||||||||| ||||||||||||    
T  18380659 gtgtttgggtatcaactgacctctcctttgtaattacaaattgattgtttgttctttttggggtgacctctttagtacaccttg 18380576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 307 - 423
Target Start/End: Original strand, 33533205 - 33533322
Alignment:
Q  307 gagcataattcagttggcagagacatgccttattatatgca--ggttggagttcgaacctcagataccccgcttattcacattgaaaaaaggcgaattct 404  Q
    |||||||| ||||||||||||||||||| || ||||||| |  |||||| |||||||||  ||| | ||| ||||||||| || |||||| | |||||||    
T  33533205 gagcataactcagttggcagagacatgcattgttatatgtagtggttggggttcgaaccatagacatcccacttattcacctt-aaaaaaagtgaattct 33533303  T
Q  405 aaccactagactccttgac 423  Q
    ||| |||||||| ||||||    
T  33533304 aacaactagactacttgac 33533322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 305 - 393
Target Start/End: Complemental strand, 31108855 - 31108765
Alignment:
Q  305 gtgagcataattcagttggcagagacatgccttattatatgca--ggttggagttcgaacctcagataccccgcttattcacattgaaaaa 393  Q
    |||||||||| ||||||||||| ||||||| | ||||||||||  || ||| |||||||||  ||| ||||| ||||||||| ||||||||    
T  31108855 gtgagcataactcagttggcagggacatgcataattatatgcaggggctggggttcgaacccgagacaccccacttattcaccttgaaaaa 31108765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 316 - 392
Target Start/End: Complemental strand, 34407174 - 34407096
Alignment:
Q  316 tcagttggcagagacatgccttattatatgca--ggttggagttcgaacctcagataccccgcttattcacattgaaaa 392  Q
    ||||||||||| ||||||| ||||||||||||  |||||| ||||||||| |||| ||||| ||||||||  |||||||    
T  34407174 tcagttggcagggacatgcattattatatgcaggggttggggttcgaaccccagacaccccacttattcatcttgaaaa 34407096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 756 - 795
Target Start/End: Original strand, 46249373 - 46249412
Alignment:
Q  756 agatggtggtcggacccgttactttgtttgggtatcgact 795  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  46249373 agatggtggtcggaccctttactttgtttgggtatcgact 46249412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 303 - 349
Target Start/End: Original strand, 28951864 - 28951910
Alignment:
Q  303 ccgtgagcataattcagttggcagagacatgccttattatatgcagg 349  Q
    |||||||||||| |||||||||||| |||||| ||||||||||||||    
T  28951864 ccgtgagcataactcagttggcagatacatgcattattatatgcagg 28951910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 345
Target Start/End: Original strand, 16985015 - 16985060
Alignment:
Q  300 ttcccgtgagcataattcagttggcagagacatgccttattatatg 345  Q
    ||||||||| ||||||||||||||||||||||| | ||||||||||    
T  16985015 ttcccgtgaacataattcagttggcagagacattcattattatatg 16985060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 345
Target Start/End: Original strand, 19149423 - 19149464
Alignment:
Q  304 cgtgagcataattcagttggcagagacatgccttattatatg 345  Q
    ||||||||||||||||||| ||||||||||| ||||||||||    
T  19149423 cgtgagcataattcagttgacagagacatgcattattatatg 19149464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 848 - 897
Target Start/End: Complemental strand, 21398477 - 21398428
Alignment:
Q  848 tagtacaccttgtgctatagagaattcatcgccgttgttaatatattcca 897  Q
    ||||||||||||| |||  |||| ||||||||||||||||||||||||||    
T  21398477 tagtacaccttgtactaatgagatttcatcgccgttgttaatatattcca 21398428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 302 - 349
Target Start/End: Complemental strand, 38555126 - 38555078
Alignment:
Q  302 cccgtgagcataattcagttggcagagac-atgccttattatatgcagg 349  Q
    |||||||||||| |||||||||||||||| |||| ||||||||||||||    
T  38555126 cccgtgagcatagttcagttggcagagacaatgcattattatatgcagg 38555078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 756 - 795
Target Start/End: Complemental strand, 4963988 - 4963949
Alignment:
Q  756 agatggtggtcggacccgttactttgtttgggtatcgact 795  Q
    ||||||||||||||||| ||||||||| ||||||||||||    
T  4963988 agatggtggtcggaccctttactttgtctgggtatcgact 4963949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 349
Target Start/End: Complemental strand, 6951888 - 6951841
Alignment:
Q  302 cccgtgagcataattcagttggcagagacatgccttattatatgcagg 349  Q
    ||||||||||||| ||||||| ||| ||||||| ||||||||||||||    
T  6951888 cccgtgagcataactcagttgacagggacatgcattattatatgcagg 6951841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 423
Target Start/End: Complemental strand, 24160624 - 24160504
Alignment:
Q  304 cgtgagcataattcagttggcagagacatgccttattatatgca--ggttggagttcgaacctcagataccccgcttattcacattgaaaaaaggcgaat 401  Q
    ||||||||||| |||||||||||||||||||  | |||||||||  ||| || ||||||||| | || || || ||||||||| ||  ||||||  ||||    
T  24160624 cgtgagcataactcagttggcagagacatgcactgttatatgcaggggtcggggttcgaaccccggacactccacttattcac-tttcaaaaagttgaat 24160526  T
Q  402 tctaaccactagactccttgac 423  Q
    |||| |||| ||||| ||||||    
T  24160525 tctagccaccagactacttgac 24160504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 395
Target Start/End: Original strand, 51017801 - 51017881
Alignment:
Q  316 tcagttggcagagacatgccttattatatgcag--gttggagttcgaacctcagataccccgcttattcacattgaaaaaag 395  Q
    ||||||||||| ||||||| || ||||||||||  || |||||||||||| | || ||||| ||||||||| ||||||||||    
T  51017801 tcagttggcagggacatgcattgttatatgcaggagtcggagttcgaacc-cggacaccccacttattcactttgaaaaaag 51017881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 304 - 341
Target Start/End: Original strand, 6284876 - 6284913
Alignment:
Q  304 cgtgagcataattcagttggcagagacatgccttatta 341  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  6284876 cgtgagcataattcagttggcagggacatgcattatta 6284913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 696 - 749
Target Start/End: Complemental strand, 10349715 - 10349662
Alignment:
Q  696 aagtatcattctttgtggtggatgaaagctaacaatgccaactttgtttatggc 749  Q
    |||||| ||||||| |||||| | ||||| ||||||||||| ||||||||||||    
T  10349715 aagtattattctttatggtggcttaaagcaaacaatgccaattttgtttatggc 10349662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 300 - 422
Target Start/End: Complemental strand, 49299339 - 49299217
Alignment:
Q  300 ttcccgtgagcataattcagttggcagagacatgccttattatatg--caggttggagttcgaacctcagataccccgcttattcacattgaaaaaaggc 397  Q
    |||||||||||||| |||||||| ||| ||||||| | ||||||||   ||| ||| ||||||||| |||| || || ||||||||| ||| | ||||      
T  49299339 ttcccgtgagcatagttcagttgacagggacatgcataattatatgtaaaggctggggttcgaacc-cagacactccacttattcaccttg-agaaagct 49299242  T
Q  398 gaattctaaccactagactccttga 422  Q
    |||||||| |||||||||| |||||    
T  49299241 gaattctagccactagactacttga 49299217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 918 - 1177
Target Start/End: Original strand, 24653387 - 24653654
Alignment:
Q  918 attatgtgtcaactggaattagatttagccgaagaaattaaactctcggcagatattgtccctaataagattagctctcactaatatttatttatttttg 1017  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  24653387 attatgtgtcaactggaattagatttagccgaagaaattaaactctcgggagatattgtctctaataagattagctctcactaatatttatttatttttg 24653486  T
Q  1018 aaataattagctatcactaaatg-aaactt---ataaaaaattaaaatgaatttgtgtctaggaaactcataggaataaac----tcttttagaataaat 1109  Q
    ||||||||||||||||||||||| ||||||   | |||||||||||||||||||||||||||| |||| |||||||||| |    | ||||  |||||||    
T  24653487 aaataattagctatcactaaatgaaaacttaaaaaaaaaaattaaaatgaatttgtgtctaggtaacttataggaataaccttttttttttgtaataaat 24653586  T
Q  1110 tgcatcatatcatatttgtttgtatatttaaacaatttaatgttattggtcacaatgtatgatgtcca 1177  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  24653587 tgcatcatatcatatttgtttgtatatttaaacaatttaatgttaatggtcacaatgtatgatgtcca 24653654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 176; E-Value: 3e-94
Query Start/End: Original strand, 73 - 558
Target Start/End: Original strand, 24652904 - 24653402
Alignment:
Q  73 atttgagaatgtgttcctctttaaagtataaagtatcgggtttgattctcttcgatgtcaatttaggtatgttaatttagcttcatnnnnnnnnttaata 172  Q
    ||||| || |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||        ||||||    
T  24652904 atttgggagtgtgttcctccttagagtataaagtatcgggtttgattctcttcgatgtcaatttaggtatgctaatttagcttcataacaaaaattaata 24653003  T
Q  173 t----atccaatgatccaaattcattttgtaatgaaaagaaaggaaa-gtctccgagttagagacttacacgtgttgtttgcatgca--tttgtnnnnnn 265  Q
    |    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||  |||            
T  24653004 tatatatccaatgatccaaattcattttgtaatgaaaaaaaaggaaaggtctccgagttagagacttacacgtgttgtttgcatgcaattttaaaaaaaa 24653103  T
Q  266 ntaaaagttatttgcatgtatgtatgtttgttttttcccgtgagcataattcagttggcagagacatgccttattatatgca--ggttggagttcgaacc 363  Q
      ||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||| |||||||| ||||||||||||  |||||| |||||||      
T  24653104 taaaaagttatttgcatgtatgtatgtttattttgtcccgtgagcataactcagttggca-agacatgcattattatatgcaggggttggggttcgaatt 24653202  T
Q  364 tcagataccccgcttattcacatt-gaaaaaaggcgaattctaaccactagact-cctt--gacnnnnnnnntgtttattttgaataaatacttaataaa 459  Q
    ||||| || || |||||||||||| ||||||| | |||||||||||| ||||||  |||   |         |||||||||| |||||||||||||||||    
T  24653203 tcagacactccacttattcacattagaaaaaaagtgaattctaaccattagactaacttaaaaaaaaatgtatgtttattttaaataaatacttaataaa 24653302  T
Q  460 ttggtaactttatttaacnnnnnnnttgataacttaattaaatgttctcctt-nnnnnnnnctttattaaatgtttgcaaattaattatgtgtcaactgg 558  Q
    ||| ||||||||||||||       |||||||||| |||||||||| |||||         ||||||||| |||||||||||||||||||||||||||||    
T  24653303 ttgataactttatttaacaaaaaaattgataactttattaaatgttatccttcataaaaaactttattaagtgtttgcaaattaattatgtgtcaactgg 24653402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 172; E-Value: 8e-92
Query Start/End: Original strand, 918 - 1161
Target Start/End: Original strand, 24651387 - 24651626
Alignment:
Q  918 attatgtgtcaactggaattagatttagccgaagaaattaaactctcggcagatattgtccctaataagattagctctcactaatatttatttatttttg 1017  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    ||||||||||||    
T  24651387 attatgtatcaactggaattagatttagccgaagaaattaaactctcggcagatattgtctctaataagattagctctcactaa----tatttatttttg 24651482  T
Q  1018 aaataattagctatcactaaatgaaacttat-aaaaaattaaaatgaatttgtgtctaggaaactcataggaataaactcttttagaataaattgcatca 1116  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| |||| |||| ||||||||||||| |||||||||||||| || ||    
T  24651483 aaataattagctatcactaaatgcaacttataaaaaaattaaaattaatttgtgtgtaggtaacttataggaataaact-ttttagaataaattacaaca 24651581  T
Q  1117 tatcatatttgtttgtatatttaaacaatttaatgttattggtca 1161  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  24651582 tatcatatttgtttgtatatttaaacaatttaatgttaatggtca 24651626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 6e-28
Query Start/End: Original strand, 955 - 1055
Target Start/End: Complemental strand, 29418655 - 29418556
Alignment:
Q  955 ttaaactctcggcagatattgtccctaataagattagctctcactaatatttatttatttttgaaataattagctatcactaaatgaaacttataaaaaa 1054  Q
    |||||||||||||||||| ||||   |||||||||||||||||||||||||||||||||||| ||| ||| | |||||||||||||||||||||||||||    
T  29418655 ttaaactctcggcagatagtgtcttcaataagattagctctcactaatatttatttattttt-aaaaaatcatctatcactaaatgaaacttataaaaaa 29418557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 432 - 558
Target Start/End: Original strand, 24651274 - 24651402
Alignment:
Q  432 tgtttattttgaataaatacttaataaattggtaactttatttaac-nnnnnnnttgataacttaattaaatgttctcctt-nnnnnnnnctttattaaa 529  Q
    |||||||||| |||||||||||||||||||||||||||||||||||        |||||||||| |||||||||| |||||         ||||||||||    
T  24651274 tgtttattttaaataaatacttaataaattggtaactttatttaacaaaaaaaattgataactttattaaatgttttccttcaaaaaagactttattaaa 24651373  T
Q  530 tgtttgcaaattaattatgtgtcaactgg 558  Q
    |||||||||||||||||||| ||||||||    
T  24651374 tgtttgcaaattaattatgtatcaactgg 24651402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 24652116 - 24652179
Alignment:
Q  11 gatggacatcaagtatgacacagacaactgtttgaagccattagataactcatatcaacaacat 74  Q
    |||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24652116 gatggagagcaagtatgacacagacaactgtttgaagccgttagataactcatatcaacaacat 24652179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 603 - 895
Target Start/End: Original strand, 29488616 - 29488907
Alignment:
Q  603 tggctcttgtgtgtatggattgtttgacacgaaagaaataatagaattttcaataatacacaacttactatgatagatcttgtagaaaaggttaagtatc 702  Q
    ||||| |||||||| ||||| |||||  | ||| | || || ||||| ||||| ||||| |||  ||| | || ||||||| ||||||||||||| ||||    
T  29488616 tggctattgtgtgtgtggatagtttggaatgaacgcaacaacagaatattcaagaatactcaaactaccacgacagatcttttagaaaaggttaaatatc 29488715  T
Q  703 attctttgtggtggatgaaagctaacaatgccaactttgtttatggcacaagtagatggtggtcggacccgttactttgtttgggtatcgactaacttat 802  Q
    | ||| |||||||| | || ||| | || ||||| |||||||||||||    ||  |||||||||||| || |||| ||||||||||||||||  | | |    
T  29488716 aatctctgtggtggcttaatgctcaaaacgccaattttgtttatggcaattataactggtggtcggactcg-tactatgtttgggtatcgactggcctct 29488814  T
Q  803 -ttttgtaattatgtagtgactgtttattctttggggtgacctctctagtacaccttgtgctatagagaattcatcgccgttgttaatatattc 895  Q
      |||||||||||  ||||||| ||| || |||||||||  |||| || ||||||||||||| ||||| || |||||||  |||||||||||||    
T  29488815 cctttgtaattatacagtgactatttgtt-tttggggtggtctctttaatacaccttgtgctttagaggatccatcgccagtgttaatatattc 29488907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 302 - 413
Target Start/End: Complemental strand, 3536034 - 3535922
Alignment:
Q  302 cccgtgagcataattcagttggcagagacatgccttattatatgcaggtt--ggagttcgaacctcagataccccgcttattcacattgaaaaaaggcga 399  Q
    |||||||||||| |||||||||||| ||||||| || |||||| ||||    || ||||||||| | || ||||| ||||||||| || |||||||  ||    
T  3536034 cccgtgagcatagttcagttggcagggacatgcattgttatatacaggagccggggttcgaaccccggacaccccacttattcaccttaaaaaaagt-ga 3535936  T
Q  400 attctaaccactag 413  Q
    ||||||||||||||    
T  3535935 attctaaccactag 3535922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 377 - 422
Target Start/End: Complemental strand, 41181861 - 41181816
Alignment:
Q  377 ttattcacattgaaaaaaggcgaattctaaccactagactccttga 422  Q
    |||||||| |||||||||| |||||||||||||||||||| |||||    
T  41181861 ttattcacgttgaaaaaagacgaattctaaccactagactacttga 41181816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 300 - 384
Target Start/End: Complemental strand, 6447581 - 6447494
Alignment:
Q  300 ttcccgtgagcataattcagttggcagagaca-tgccttattatatgcaggtt--ggagttcgaacctcagataccccgcttattcac 384  Q
    ||||||||||||||| ||||||||||| |||| ||| ||||||||||||||    || ||||||||||| || ||||| |||||||||    
T  6447581 ttcccgtgagcataactcagttggcagggacaatgcattattatatgcaggggccggggttcgaacctcggacaccccacttattcac 6447494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 320 - 423
Target Start/End: Original strand, 8934797 - 8934900
Alignment:
Q  320 ttggcagagacatgccttattatatgca-ggttggagttcgaacctcagataccccgcttattcacattgaaaaaaggcgaattctaaccactagactcc 418  Q
    |||||||||| |||| |||||||||||| ||| || |||||| || | |||||||| ||||||||| ||  |||||||  ||||||||||| |||||| |    
T  8934797 ttggcagagaaatgcattattatatgcatggtcggggttcgagccccggataccccacttattcacctt-taaaaaggtaaattctaaccattagactac 8934895  T
Q  419 ttgac 423  Q
    |||||    
T  8934896 ttgac 8934900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 349
Target Start/End: Complemental strand, 5932116 - 5932069
Alignment:
Q  302 cccgtgagcataattcagttggcagagacatgccttattatatgcagg 349  Q
    ||||||||||||||||||||| ||| || |||| ||||||||||||||    
T  5932116 cccgtgagcataattcagttgacagggatatgcattattatatgcagg 5932069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 355 - 414
Target Start/End: Original strand, 6291047 - 6291105
Alignment:
Q  355 gttcgaacctcagataccccgcttattcacattgaaaaaaggcgaattctaaccactaga 414  Q
    ||||||||| |||| |||||  |||||||||||| ||||||| |||||||||||||||||    
T  6291047 gttcgaaccccagacaccccatttattcacattg-aaaaaggtgaattctaaccactaga 6291105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 413
Target Start/End: Complemental strand, 40250275 - 40250163
Alignment:
Q  302 cccgtgagcataattcagttggcagagacatgccttattatatgcag--gttggagttcgaacctcagataccccgcttattcacattgaaaaaaggcga 399  Q
    ||||||||||||  |||||||||||  |||||| || ||||||||||  || || |||||||||||  | ||||  ||||||| ||||||||||| | ||    
T  40250275 cccgtgagcatagctcagttggcagtaacatgcattgttatatgcaggagtcggggttcgaacctcgaacaccctacttattctcattgaaaaaa-gaga 40250177  T
Q  400 attctaaccactag 413  Q
    ||||||| ||||||    
T  40250176 attctaatcactag 40250163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 6e-34; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 720 - 897
Target Start/End: Original strand, 26701186 - 26701364
Alignment:
Q  720 aaagctaacaatgccaactttgtttatggcacaagtagatggtggtcggacccgttactttgtttgggtatcgactaacttattt-ttgtaattatgtag 818  Q
    ||||||||||||| ||  |||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||| | ||| ||||||||||   |    
T  26701186 aaagctaacaatgtcacgtttgtttatggcacgattagatggtggtcagacccgttactttgtttgggtatcgactaacctgtttattgtaattatactg 26701285  T
Q  819 tgactgtttattctttggggtgacctctctagtacaccttgtgctatagagaattcatcgccgttgttaatatattcca 897  Q
    ||| |||||   |||||||||  | ||| ||||||||||||||||| | |  | |||||||||||||||||||||||||    
T  26701286 tgattgtttgccctttggggttgcttctttagtacaccttgtgctaaataagaatcatcgccgttgttaatatattcca 26701364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 302 - 412
Target Start/End: Original strand, 41998095 - 41998205
Alignment:
Q  302 cccgtgagcataattcagttggcagagacatgccttattatatgca-ggttggagttcgaacctcagataccccgcttattcacattgaaaaaaggcgaa 400  Q
    ||||||||||||| | |||||| |||||||||| ||||||||| || ||   ||||||||||| |||| ||||| ||||||||||||| |||||||||||    
T  41998095 cccgtgagcataactaagttggtagagacatgcattattatatacaagggccgagttcgaaccacagacaccccacttattcacattg-aaaaaggcgaa 41998193  T
Q  401 ttctaaccacta 412  Q
    ||||| ||||||    
T  41998194 ttctagccacta 41998205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 302 - 416
Target Start/End: Original strand, 18179325 - 18179440
Alignment:
Q  302 cccgtgagcataattcagttggcagagacatgccttattatatgcagg--ttggagttcgaacctcagataccccgcttattcacattgaaaaaaggcga 399  Q
    ||||||||||||| ||||||||||| ||||||| || |||||||||||    |||||||||||| |||| |||| |||||||| | ||| ||||||| ||    
T  18179325 cccgtgagcataactcagttggcagggacatgcattgttatatgcagggaccggagttcgaaccccagacaccctgcttattctccttg-aaaaaggaga 18179423  T
Q  400 attctaaccactagact 416  Q
    |||||| ||||||||||    
T  18179424 attctagccactagact 18179440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 302 - 423
Target Start/End: Original strand, 9931084 - 9931206
Alignment:
Q  302 cccgtgagcataattcagttggcagagacatgccttattatatgca--ggttggagttcgaacctcagataccccgcttattcacattgaaaaaaggcga 399  Q
    ||||||||||||| |||||| |||| ||||||| ||||||||||||   | ||||||||||||| || | ||||| ||||||||| || ||| |||| ||    
T  9931084 cccgtgagcataactcagttagcagggacatgcattattatatgcaagagctggagttcgaaccccaaacaccccacttattcacctt-aaagaaggtga 9931182  T
Q  400 attctaaccactagactccttgac 423  Q
    |||||||| |||||||| ||||||    
T  9931183 attctaactactagactacttgac 9931206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 296 - 412
Target Start/End: Complemental strand, 37262209 - 37262093
Alignment:
Q  296 ttttttcccgtgagcataattcagttggcagagacatgccttattatatgcaggttggagttcgaacctcagataccccgcttattcacattgaaaaaag 395  Q
    |||||| ||||||||||| |||||||||||| ||||||| || ||||||||||| |   |||| |||| | |||||||| ||||||||| || ||||| |    
T  37262209 tttttttccgtgagcatagttcagttggcagggacatgcgttgttatatgcagggtcaggttcaaaccccggataccccacttattcaccttaaaaaatg 37262110  T
Q  396 gcgaattctaaccacta 412  Q
      |||||||||||||||    
T  37262109 atgaattctaaccacta 37262093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 302 - 416
Target Start/End: Complemental strand, 2643913 - 2643798
Alignment:
Q  302 cccgtgagcataattcagttggcagagacatgccttattatatgca--ggttggagttcgaacctcagataccccgcttattcacattgaaaaaaggcga 399  Q
    ||||||||||||  | ||||||||||||||||| ||||||||||||  ||| || ||| ||||| |||| ||||| ||||||||| || |||||| | ||    
T  2643913 cccgtgagcatagcttagttggcagagacatgcattattatatgcatgggtcggggtttgaaccccagacaccccacttattcacctt-aaaaaatgtga 2643815  T
Q  400 attctaaccactagact 416  Q
    | |||||||||||||||    
T  2643814 actctaaccactagact 2643798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 306 - 412
Target Start/End: Complemental strand, 9769674 - 9769567
Alignment:
Q  306 tgagcataattcagttggcagagacatgccttattatatgcagg--ttggagttcgaacctcagataccccgcttattcacattgaaaaaaggcgaattc 403  Q
    ||||||||  ||||||||||| ||||||| |||||||||| |||  |||| ||||||||| | || ||||| ||||||||| ||| ||||||| ||||||    
T  9769674 tgagcatagctcagttggcagggacatgcattattatatgtagggattggggttcgaaccccggacaccccacttattcaccttg-aaaaaggtgaattc 9769576  T
Q  404 taaccacta 412  Q
    |||||||||    
T  9769575 taaccacta 9769567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 423
Target Start/End: Complemental strand, 9410425 - 9410304
Alignment:
Q  302 cccgtgagcataattcagttggcagagacatgccttattatatgcaggttggag-ttcgaacctcagataccccgcttattcacattgaaaaaaggcgaa 400  Q
    |||||||||||| |||||||||||  ||||||| |  ||||||||||| | ||| ||||||||||||| ||||| ||||||||  ||| ||||||| |||    
T  9410425 cccgtgagcatagttcagttggcaaggacatgcatagttatatgcagggttgagattcgaacctcagacaccccacttattcatcttg-aaaaaggtgaa 9410327  T
Q  401 ttctaaccactagactccttgac 423  Q
    || |||| |||| ||| ||||||    
T  9410326 ttttaactactaaactacttgac 9410304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 305 - 393
Target Start/End: Original strand, 43020611 - 43020701
Alignment:
Q  305 gtgagcataattcagttggcagagacatgccttattatatgca--ggttggagttcgaacctcagataccccgcttattcacattgaaaaa 393  Q
    |||||||||  || |||||||| ||||||| ||||||||||||  |||||| ||||||||||| || ||||| || |||||| ||||||||    
T  43020611 gtgagcatagctcggttggcagggacatgcattattatatgcaggggttggggttcgaacctcggacaccccactcattcaccttgaaaaa 43020701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 302 - 393
Target Start/End: Complemental strand, 9768907 - 9768814
Alignment:
Q  302 cccgtgagcataattcagttggcagagacatgccttattatatgca--ggttggagttcgaacctcagataccccgcttattcacattgaaaaa 393  Q
    ||||||||||||  ||||||||||| ||||||| || |||||||||  ||| || ||||||||| | || ||||| ||||||||| ||||||||    
T  9768907 cccgtgagcatagctcagttggcagggacatgcattgttatatgcaggggtcggggttcgaaccccggacaccccacttattcaccttgaaaaa 9768814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 423
Target Start/End: Original strand, 13941319 - 13941438
Alignment:
Q  305 gtgagcataattcagttggcagagacatgccttattatatgca-ggttgga-gttcgaacctcagataccccgcttattcacattgaaaaaaggcgaatt 402  Q
    ||||| ||| |||||||||||  ||||||| || ||||||||| |||| || |||||||| || || ||||| ||||||||  ||||||||| | |||||    
T  13941319 gtgagtatagttcagttggcaaggacatgcattgttatatgcagggttcgaggttcgaacttcggacaccccacttattcatcttgaaaaaa-gtgaatt 13941417  T
Q  403 ctaaccactagactccttgac 423  Q
    |||||||||| ||| ||||||    
T  13941418 ctaaccactaaactacttgac 13941438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 756 - 792
Target Start/End: Complemental strand, 22565684 - 22565648
Alignment:
Q  756 agatggtggtcggacccgttactttgtttgggtatcg 792  Q
    ||||||||||| |||||||||||||||||||||||||    
T  22565684 agatggtggtcagacccgttactttgtttgggtatcg 22565648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 412
Target Start/End: Original strand, 195055 - 195152
Alignment:
Q  316 tcagttggcagagacatgccttattatatgcaggt--tggagttcgaacctcagataccccgcttattcacattgaaaaaaggcgaattctaaccacta 412  Q
    ||||||||||| ||||||| | ||||||||||||   ||  ||||| ||| |||| ||||| ||||||||| |||||||| || |||||||||||||||    
T  195055 tcagttggcagggacatgcataattatatgcaggggctgaggttcgtaccccagacaccccacttattcaccttgaaaaa-ggtgaattctaaccacta 195152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 412
Target Start/End: Original strand, 5684133 - 5684230
Alignment:
Q  316 tcagttggcagagacatgccttattatatgca--ggttggagttcgaacctcagataccccgcttattcacattgaaaaaaggcgaattctaaccacta 412  Q
    ||||||||||||||||||| ||||||||||||  |||| | | | |||||||||| ||||| ||||||||| || |||||| | ||||| |||| ||||    
T  5684133 tcagttggcagagacatgcattattatatgcaggggttag-gattgaacctcagacaccccacttattcactttaaaaaaaagtgaattttaactacta 5684230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 363
Target Start/End: Complemental strand, 8758463 - 8758404
Alignment:
Q  305 gtgagcataattcagttggcagagacatgccttattatatgcag-gttggagttcgaacc 363  Q
    ||||||||||||||||||| |||||||| | |||||||||| || ||||| |||||||||    
T  8758463 gtgagcataattcagttggtagagacatacattattatatgtagagttggggttcgaacc 8758404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 688 - 791
Target Start/End: Original strand, 13868263 - 13868366
Alignment:
Q  688 aaaaggttaagtatcattctttgtggtggatgaaagctaacaatgccaactttgtttatggcacaagtagatggtggtcggacccgttactttgtttggg 787  Q
    |||| ||||| ||||| |||||||||||| | |||||||| || ||||| ||| | || || |||   ||||||||||||||||| ||| | ||||||||    
T  13868263 aaaaagttaaatatcactctttgtggtggctaaaagctaataaggccaattttatgtacggtacacaaagatggtggtcggaccctttattatgtttggg 13868362  T
Q  788 tatc 791  Q
    ||||    
T  13868363 tatc 13868366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 414
Target Start/End: Original strand, 42908768 - 42908881
Alignment:
Q  302 cccgtgagcataattcagttggcagagacatgccttattatatgca--ggttggagttcgaacctcagataccccgcttattcacattgaaaaaaggcga 399  Q
    ||||||||| ||  ||||||||||| ||||||| || |||||||||  ||| || ||||||||  | |||||||| |||||||   ||| ||||||| ||    
T  42908768 cccgtgagcttagctcagttggcagggacatgcattgttatatgcaggggtcggggttcgaactccggataccccacttattcttcttg-aaaaaggaga 42908866  T
Q  400 attctaaccactaga 414  Q
    |||||||||||||||    
T  42908867 attctaaccactaga 42908881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 413
Target Start/End: Complemental strand, 7906424 - 7906312
Alignment:
Q  302 cccgtgagcataattcagttggcagagacatgccttattatatgca--ggttggagttcgaacctcagataccccgcttattcacattgaaaaaaggcga 399  Q
    |||||||||||| ||||||||| || ||||||| || |||||||||  || ||| |||||||||   || |||||||||||| || || |||||| | ||    
T  7906424 cccgtgagcatagttcagttggtagggacatgcattgttatatgcaggggctggggttcgaacccgggacaccccgcttattgacctt-aaaaaatgtga 7906326  T
Q  400 attctaaccactag 413  Q
    |||||| |||||||    
T  7906325 attctagccactag 7906312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 840 - 886
Target Start/End: Complemental strand, 17823667 - 17823621
Alignment:
Q  840 gacctctctagtacaccttgtgctatagagaattcatcgccgttgtt 886  Q
    |||||||  |||||||||||||||| |||| ||||||||||||||||    
T  17823667 gacctcttgagtacaccttgtgctaaagaggattcatcgccgttgtt 17823621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 28417372 - 28417330
Alignment:
Q  306 tgagcataattcagttggcagagacatgccttattatatgcag 348  Q
    ||||||||| ||||||||||||||||||| || ||||||||||    
T  28417372 tgagcataactcagttggcagagacatgcattcttatatgcag 28417330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 413
Target Start/End: Original strand, 41677057 - 41677169
Alignment:
Q  302 cccgtgagcataattcagttggcagagacatgccttattatatgc--aggttggagttcgaacctcagataccccgcttattcacattgaaaaaaggcga 399  Q
    ||||||||| ||  ||||||||||||||||| | |||||||||||   ||| || ||||||||  | || ||||| ||||||||| ||| ||||||| ||    
T  41677057 cccgtgagcgtagctcagttggcagagacattcattattatatgcgggggtcggggttcgaactccggacaccccacttattcaccttg-aaaaaggtga 41677155  T
Q  400 attctaaccactag 413  Q
    |||||| |||||||    
T  41677156 attctagccactag 41677169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 349
Target Start/End: Complemental strand, 46670941 - 46670895
Alignment:
Q  303 ccgtgagcataattcagttggcagagacatgccttattatatgcagg 349  Q
    ||||||||||||||||||| |||| ||||||| || |||||||||||    
T  46670941 ccgtgagcataattcagttagcagtgacatgcattgttatatgcagg 46670895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 348
Target Start/End: Complemental strand, 51917600 - 51917554
Alignment:
Q  302 cccgtgagcataattcagttggcagagacatgccttattatatgcag 348  Q
    ||||||||||||  |||||||||| |||||||| |||||||||||||    
T  51917600 cccgtgagcatagctcagttggcatagacatgcattattatatgcag 51917554  T

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Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 832 - 893
Target Start/End: Complemental strand, 10122438 - 10122377
Alignment:
Q  832 tttggggtgacctctctagtacaccttgtgctatagagaattcatcgccgttgttaatatat 893  Q
    |||||||||||||||  |||||| ||||| ||| || | ||||| |||||||||||||||||    
T  10122438 tttggggtgacctcttgagtacatcttgtactaaaggggattcaccgccgttgttaatatat 10122377  T

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Target: scaffold0057 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 687 - 795
Target Start/End: Original strand, 3380 - 3488
Alignment:
Q  687 gaaaaggttaagtatcattctttgtggtggatgaaagctaacaatgccaactttgtttatggcacaagtagatggtggtcggacccgttactttgtttgg 786  Q
    |||||||||||  |||| || || |||||| ||||||| |||||  |||  |||||||||||  ||  |||||||||||||||||||||  |||||||||    
T  3380 gaaaaggttaaacatcactccttttggtggttgaaagcaaacaacaccatttttgtttatggttcacatagatggtggtcggacccgttgatttgtttgg 3479  T
Q  787 gtatcgact 795  Q
    |||||||||    
T  3480 gtatcgact 3488  T

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Target: scaffold0119 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 302 - 423
Target Start/End: Original strand, 1036 - 1158
Alignment:
Q  302 cccgtgagcataattcagttggcagagacatgccttattatatgca--ggttggagttcgaacctcagataccccgcttattcacattgaaaaaaggcga 399  Q
    ||||||||||||  |||||||| || ||||||| | |||||||| |  || ||| ||||||||| |||| ||||| ||||||||| ||| ||||||| ||    
T  1036 cccgtgagcatagctcagttggtagggacatgcataattatatgtaggggctggggttcgaaccccagacaccccacttattcaccttg-aaaaaggtga 1134  T
Q  400 attctaaccactagactccttgac 423  Q
    |||||| |||||| ||| ||||||    
T  1135 attctagccactaaactacttgac 1158  T

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Target: scaffold0045 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 317 - 412
Target Start/End: Complemental strand, 30983 - 30885
Alignment:
Q  317 cagttggcagagacatgccttattatatgca--ggttggagttcgaacctc-agataccccgcttattcacattgaaaaaaggcgaattctaaccacta 412  Q
    |||||||||| |||||||  |||||||||||  |||||||||||||||| | ||| ||| | ||||||||| || |||||||| ||||||||| |||||    
T  30983 cagttggcagggacatgcagtattatatgcaggggttggagttcgaaccactagacacctcacttattcactttaaaaaaaggtgaattctaatcacta 30885  T

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