View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6976_low_16 (Length: 237)
Name: NF6976_low_16
Description: NF6976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6976_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 222
Target Start/End: Original strand, 6409036 - 6409245
Alignment:
| Q |
13 |
gacatcaaaatgaatagtgttcaattaagttggaaccctaatcttatttgttgcaatgtttaagttggttgtttcgtaacctatgagcaaaattaaatta |
112 |
Q |
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| T |
6409036 |
gacattaaaatgaatagtatccaattaaattggaaccctaatcttatttgttgcaatgtttaagttggttgtttcgtaacctatgagcaaaattaaatta |
6409135 |
T |
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| Q |
113 |
taaacattcacaaaattacatcatcagtcgtttatgtttaactcttatttcagattgatctctgttgataaaaatattggtaaaaacatcttattttcct |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6409136 |
taaacattcacaaaattacatcatcagtcgtttatgtttaactcttatttcagattgatctctgttgataaaaatattggtaaaaacatcttattttcct |
6409235 |
T |
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| Q |
213 |
ctcggctgat |
222 |
Q |
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|||||||||| |
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| T |
6409236 |
ctcggctgat |
6409245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 1345192 - 1345244
Alignment:
| Q |
13 |
gacatcaaaatgaatagtgttcaattaagttggaaccctaatcttatttgttg |
65 |
Q |
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|||||||| | || |||||||||||||||||||||||||| |||||| ||||| |
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| T |
1345192 |
gacatcaataagagtagtgttcaattaagttggaaccctagtcttatctgttg |
1345244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 1609509 - 1609457
Alignment:
| Q |
13 |
gacatcaaaatgaatagtgttcaattaagttggaaccctaatcttatttgttg |
65 |
Q |
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| T |
1609509 |
gacatcaaaaagaatagtgtccaattaagttggaaccctactctaatatgttg |
1609457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 9152593 - 9152541
Alignment:
| Q |
13 |
gacatcaaaatgaatagtgttcaattaagttggaaccctaatcttatttgttg |
65 |
Q |
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|||||||||| ||||| | ||||| |||||||||||| || |||||||||||| |
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| T |
9152593 |
gacatcaaaaagaatatttttcaactaagttggaaccatactcttatttgttg |
9152541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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