View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6976_low_2 (Length: 570)

Name: NF6976_low_2
Description: NF6976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6976_low_2
NF6976_low_2
[»] chr4 (3 HSPs)
chr4 (5-553)||(53034477-53035022)
chr4 (115-184)||(1016784-1016853)
chr4 (257-303)||(35743366-35743412)
[»] chr7 (4 HSPs)
chr7 (257-359)||(25670513-25670615)
chr7 (257-288)||(9210933-9210964)
chr7 (256-292)||(529684-529720)
chr7 (259-303)||(48157049-48157093)
[»] chr1 (6 HSPs)
chr1 (257-303)||(12564426-12564472)
chr1 (248-290)||(6292602-6292644)
chr1 (430-479)||(11137765-11137814)
chr1 (259-291)||(5591896-5591928)
chr1 (397-472)||(34619479-34619552)
chr1 (244-288)||(41505786-41505830)
[»] chr6 (2 HSPs)
chr6 (257-351)||(33089555-33089649)
chr6 (257-286)||(31776199-31776228)
[»] chr2 (3 HSPs)
chr2 (249-279)||(7937093-7937123)
chr2 (257-303)||(15370250-15370296)
chr2 (244-288)||(30331863-30331907)
[»] chr5 (5 HSPs)
chr5 (238-287)||(36796615-36796664)
chr5 (405-446)||(42849884-42849925)
chr5 (262-290)||(35036912-35036940)
chr5 (244-288)||(39594919-39594963)
chr5 (243-287)||(40426878-40426922)
[»] chr8 (1 HSPs)
chr8 (244-288)||(38602439-38602483)


Alignment Details
Target: chr4 (Bit Score: 479; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 5 - 553
Target Start/End: Original strand, 53034477 - 53035022
Alignment:
Q  5 atggacatcatcagaaagggaaggaagctaaaagcgtttagtgcataataacatttaactgacatgaacagaagcaaaaacaaaaagaactgtgaaatga 104  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53034477 atggacataatcagaaagggaaggaagctgaaagcgtttagtgcataataacatttaactgacatgaacagaagcaaaaacaaaaagaactgtgaaatga 53034576  T
Q  105 ggtaaatataatacctgacccatgtcactgagtaaaagatcaccctcaacctctcgctccaatgcaatgtctacgagttacaaattttaaaataaaatta 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53034577 ggtaaatataatacctgacccatgtcactgagtaaaagatcaccctcaacctctcgctccaatgcaatgtctacgagttacaaattttaaaataaaatta 53034676  T
Q  205 caaacaatgaaaaatagacaggaacaacttccatacttggggcttgttttgtttgacttatttgagcttatctactgatataagcattcgtgtgactgtc 304  Q
    ||||||||||||||||||||||||||||   |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53034677 caaacaatgaaaaatagacaggaacaac---catacttggggcttgtttggtttgacttatttgagcttatctactgatataagcattcgtgtgactgtc 53034773  T
Q  305 aaagagcagttatgaaaacaacttactacatgttgataaattgttttgagcttatggcttatataaagaaattgaattgaatttatattttcatctttag 404  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||| |||| |||| ||||| |||||||||||||||    
T  53034774 aaagagcagttatgaaaacaacttacgacatgttcataaattgttttcagcttatggcttatataaagcaatttaatttaatttttattttcatctttag 53034873  T
Q  405 ttatagaaatagctcttacataaggacttatgccataagctgaaaattaagttatgtttatccaaacaaggccttagagagcgaacagtaggggaaaatg 504  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  53034874 ttatagaaatagctcttacataaggacttatgccataagctgaaaattaagttatgtttatccaaaaacggccttagagagcgaacagtaggggaaaatg 53034973  T
Q  505 aaagcatactaagcattgagggtgaaatatcgagaccaatccaatgatg 553  Q
    ||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  53034974 aaaacatactaagcattgagggtgaaatgtcgagaccaatccaatgatg 53035022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 115 - 184
Target Start/End: Complemental strand, 1016853 - 1016784
Alignment:
Q  115 atacctgacccatgtcactgagtaaaagatcaccctcaacctctcgctccaatgcaatgtctacgagtta 184  Q
    |||||||||||||||||| ||||||||| || ||||||||||| || |||||||| || ||||| |||||    
T  1016853 atacctgacccatgtcaccgagtaaaaggtcgccctcaacctcacggtccaatgcgatatctacaagtta 1016784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 257 - 303
Target Start/End: Complemental strand, 35743412 - 35743366
Alignment:
Q  257 ttgacttatttgagcttatctactgatataagcattcgtgtgactgt 303  Q
    |||||||||||||| ||||||||| ||||||||||| ||| ||||||    
T  35743412 ttgacttatttgagattatctactaatataagcatttgtgagactgt 35743366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 359
Target Start/End: Original strand, 25670513 - 25670615
Alignment:
Q  257 ttgacttatttgagcttatctactgatataagcattcgtgtgactgtcaaagagcagttatgaaaacaacttactacatgttgataaattgttttgagct 356  Q
    |||||||| ||||||||||||| ||| ||||||  | ||| ||||||   |||  | ||||||||||||||||  ||||||| |||||||||||| ||||    
T  25670513 ttgacttacttgagcttatctattgacataagctcttgtgagactgtttgagaaaacttatgaaaacaacttatgacatgttaataaattgttttcagct 25670612  T
Q  357 tat 359  Q
    |||    
T  25670613 tat 25670615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 288
Target Start/End: Complemental strand, 9210964 - 9210933
Alignment:
Q  257 ttgacttatttgagcttatctactgatataag 288  Q
    ||||||||||||||||||||||||||||||||    
T  9210964 ttgacttatttgagcttatctactgatataag 9210933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 529720 - 529684
Alignment:
Q  256 tttgacttatttgagcttatctactgatataagcatt 292  Q
    ||||||||||||||||||||||||| | |||||||||    
T  529720 tttgacttatttgagcttatctactaagataagcatt 529684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 259 - 303
Target Start/End: Original strand, 48157049 - 48157093
Alignment:
Q  259 gacttatttgagcttatctactgatataagcattcgtgtgactgt 303  Q
    ||||||||||||||||| ||||||| |||||||| ||| ||||||    
T  48157049 gacttatttgagcttatttactgatttaagcatttgtgagactgt 48157093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 303
Target Start/End: Original strand, 12564426 - 12564472
Alignment:
Q  257 ttgacttatttgagcttatctactgatataagcattcgtgtgactgt 303  Q
    ||||||||||||||||||| |||||||||||||| | ||||||||||    
T  12564426 ttgacttatttgagcttatatactgatataagcacttgtgtgactgt 12564472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 290
Target Start/End: Complemental strand, 6292644 - 6292602
Alignment:
Q  248 ttgttttgtttgacttatttgagcttatctactgatataagca 290  Q
    |||||| | |||||||||||||||||||||||||| |||||||    
T  6292644 ttgtttggattgacttatttgagcttatctactgacataagca 6292602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 479
Target Start/End: Complemental strand, 11137814 - 11137765
Alignment:
Q  430 acttatgccataagctgaaaattaagttatgtttatccaaacaaggcctt 479  Q
    |||||||| |||||||| |||||||||| | |||||||||||| ||||||    
T  11137814 acttatgctataagctgtaaattaagttttttttatccaaacagggcctt 11137765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 259 - 291
Target Start/End: Original strand, 5591896 - 5591928
Alignment:
Q  259 gacttatttgagcttatctactgatataagcat 291  Q
    ||||||||||||||||||||||| |||||||||    
T  5591896 gacttatttgagcttatctactggtataagcat 5591928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 397 - 472
Target Start/End: Original strand, 34619479 - 34619552
Alignment:
Q  397 atctttagttatagaaatagctcttacataaggacttatgccataagctgaaaattaagttatgtttatccaaaca 472  Q
    |||||| ||||||||||| |||  |||||||| | |||||| |||||||| ||||||||   ||||||||||||||    
T  34619479 atcttttgttatagaaatggcttatacataagcaattatgctataagctgcaaattaag--ctgtttatccaaaca 34619552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 41505830 - 41505786
Alignment:
Q  244 gggcttgttttgtttgacttatttgagcttatctactgatataag 288  Q
    |||||||||| | ||| |||||||||||||||||||||| |||||    
T  41505830 gggcttgtttggattggcttatttgagcttatctactgacataag 41505786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 257 - 351
Target Start/End: Complemental strand, 33089649 - 33089555
Alignment:
Q  257 ttgacttatttgagcttatctactgatataagcattcgtgtgactgtcaaagagcagttatgaaaacaacttactacatgttgataaattgtttt 351  Q
    |||||||||||||||||||||||||| ||| | ||| ||| |||| |   |||| | ||||||||||| ||||  ||||||| |||| |||||||    
T  33089649 ttgacttatttgagcttatctactgacatatgtatttgtgagactatttcagagaacttatgaaaacagcttaggacatgtttataagttgtttt 33089555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 286
Target Start/End: Original strand, 31776199 - 31776228
Alignment:
Q  257 ttgacttatttgagcttatctactgatata 286  Q
    ||||||||||||||||||||||||||||||    
T  31776199 ttgacttatttgagcttatctactgatata 31776228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 279
Target Start/End: Complemental strand, 7937123 - 7937093
Alignment:
Q  249 tgttttgtttgacttatttgagcttatctac 279  Q
    |||||||||||||||||||||||||||||||    
T  7937123 tgttttgtttgacttatttgagcttatctac 7937093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 257 - 303
Target Start/End: Original strand, 15370250 - 15370296
Alignment:
Q  257 ttgacttatttgagcttatctactgatataagcattcgtgtgactgt 303  Q
    |||||||||||||||||||||||||  ||||||||| ||| ||||||    
T  15370250 ttgacttatttgagcttatctactggcataagcatttgtgagactgt 15370296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 30331907 - 30331863
Alignment:
Q  244 gggcttgttttgtttgacttatttgagcttatctactgatataag 288  Q
    |||||||||| | ||||||||||| |||||||||||||| |||||    
T  30331907 gggcttgtttggattgacttatttcagcttatctactgacataag 30331863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 287
Target Start/End: Original strand, 36796615 - 36796664
Alignment:
Q  238 tacttggggcttgttttgtttgacttatttgagcttatctactgatataa 287  Q
    |||||| ||||||||| | |||||||||||||||||||||| ||| ||||    
T  36796615 tacttgaggcttgtttggattgacttatttgagcttatctaatgacataa 36796664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 446
Target Start/End: Complemental strand, 42849925 - 42849884
Alignment:
Q  405 ttatagaaatagctcttacataaggacttatgccataagctg 446  Q
    ||||||||||||||  |||||||| |||||||||||||||||    
T  42849925 ttatagaaatagcttatacataagcacttatgccataagctg 42849884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 262 - 290
Target Start/End: Original strand, 35036912 - 35036940
Alignment:
Q  262 ttatttgagcttatctactgatataagca 290  Q
    |||||||||||||||||||||||||||||    
T  35036912 ttatttgagcttatctactgatataagca 35036940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 39594963 - 39594919
Alignment:
Q  244 gggcttgttttgtttgacttatttgagcttatctactgatataag 288  Q
    |||||||||| | ||||||||||||||||||||||| || |||||    
T  39594963 gggcttgtttggattgacttatttgagcttatctaccgacataag 39594919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 40426922 - 40426878
Alignment:
Q  243 ggggcttgttttgtttgacttatttgagcttatctactgatataa 287  Q
    ||||| ||||||| |||||||||||||||||||||| ||| ||||    
T  40426922 ggggcctgttttggttgacttatttgagcttatctaatgacataa 40426878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 38602483 - 38602439
Alignment:
Q  244 gggcttgttttgtttgacttatttgagcttatctactgatataag 288  Q
    |||| ||||| | |||||||||||||||||||||||||| |||||    
T  38602483 gggcctgtttggattgacttatttgagcttatctactgacataag 38602439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University