View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6976_low_3 (Length: 516)

Name: NF6976_low_3
Description: NF6976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6976_low_3
NF6976_low_3
[»] chr7 (4 HSPs)
chr7 (14-503)||(8552901-8553390)
chr7 (137-190)||(5177149-5177202)
chr7 (17-96)||(5177216-5177295)
chr7 (404-462)||(5176892-5176950)
[»] chr4 (1 HSPs)
chr4 (28-503)||(49610345-49610820)
[»] chr8 (16 HSPs)
chr8 (135-474)||(5203455-5203794)
chr8 (115-281)||(5174499-5174665)
chr8 (17-96)||(1797431-1797510)
chr8 (141-448)||(5193243-5193550)
chr8 (115-192)||(6230175-6230252)
chr8 (17-97)||(5174710-5174790)
chr8 (403-474)||(5170158-5170229)
chr8 (372-445)||(6229973-6230046)
chr8 (28-96)||(5170507-5170575)
chr8 (17-97)||(5203859-5203939)
chr8 (385-474)||(5174327-5174416)
chr8 (412-459)||(5186445-5186492)
chr8 (22-97)||(6230297-6230372)
chr8 (135-235)||(1797519-1797619)
chr8 (243-278)||(5170330-5170365)
chr8 (412-459)||(6233115-6233162)
[»] chr6 (1 HSPs)
chr6 (137-192)||(16472299-16472354)


Alignment Details
Target: chr7 (Bit Score: 428; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 14 - 503
Target Start/End: Original strand, 8552901 - 8553390
Alignment:
Q  14 ggacatctatatatacctcttgtattccatgaacatcaactgtcttgagctttggtagaccatgcatgctcaaagacttcatgagttttacgccgcctcc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8552901 ggacatctatatatacctcttgtattccatgaacatcaactgtcttgagctttggtagaccatgcatgctcaaagacttcatgagttttacgccgcctcc 8553000  T
Q  114 cgggctcaaaactgaacaatgcttcaaagttatttgttcaatgaaaggacaacaagaaatgagatgctcaattgcatgtccatcttccaaaagaacaatc 213  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8553001 cgggctcaaaactgaacaatgcttcaaagttatatgttcaatgaaaggacaacaagaaatgagatgctcaattgcatgttcatcttccaaaagaacaatc 8553100  T
Q  214 cacaatgacaatactctcaatgnnnnnnncttaattgactgattcatgaatgcttgatcaactctgatnnnnnnnttcaacaccaacttggtaagtgatt 313  Q
    ||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||| ||       |||||||||| ||||||||||||||    
T  8553101 cacaatgacaatactctcaatgaaaaaaacttaattgactgattcatgaatgcttgatcaactctaatcccgcccttcaacaccaccttggtaagtgatt 8553200  T
Q  314 ttgcttcgattacacctgtcggtaaatcatagcatttgccatgaccttcctcaatgtagttgggaccacatggcaaacaaagctctactacttcaacacc 413  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8553201 ttgcttcgattacacctgtcggtaaaacatagcatttgccatgaccttcctcaatgtagttgggaccacatggcaaacaaagctctactacttcaacacc 8553300  T
Q  414 acttccacttgccgacttcaaccaaagatcaacatgctttgacatgtaatgaagctcaaaacggttcaatataatcttacattctttgat 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8553301 acttccacttgccgacttcaaccaaagatcaacatgctttgacatgtaatgaagctcaaaacggttcaatataatcttacattctttgat 8553390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 5177202 - 5177149
Alignment:
Q  137 tcaaagttatttgttcaatgaaaggacaacaagaaatgagatgctcaattgcat 190  Q
    |||||||||| |||||||| ||||||||||||||||||||||| ||||||||||    
T  5177202 tcaaagttatatgttcaatcaaaggacaacaagaaatgagatgttcaattgcat 5177149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 5177295 - 5177216
Alignment:
Q  17 catctatatatacctcttgtattccatgaacatcaactgtcttgagctttggtagaccatgcatgctcaaagacttcatg 96  Q
    |||| ||||||||||| || ||||| | ||| | |||||||||||||||  |||||||||| ||||||||||||||||||    
T  5177295 catcaatatatacctcctggattccttcaactttaactgtcttgagcttaagtagaccatgaatgctcaaagacttcatg 5177216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 404 - 462
Target Start/End: Complemental strand, 5176950 - 5176892
Alignment:
Q  404 cttcaacaccacttccacttgccgacttcaaccaaagatcaacatgctttgacatgtaa 462  Q
    |||||||||||| | |||||||  |||||||||||||||||| || |||| ||||||||    
T  5176950 cttcaacaccacattcacttgctaacttcaaccaaagatcaatatcctttaacatgtaa 5176892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 218; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 28 - 503
Target Start/End: Complemental strand, 49610820 - 49610345
Alignment:
Q  28 acctcttgtattccatgaacatcaactgtcttgagctttggtagaccatgcatgctcaaagacttcatgagttttacgccgcctcccgggctcaaaactg 127  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||  |||||||||  ||||||| ||      
T  49610820 acctcttgtattccttgaacatcaactgtcttgagctttggtagaccaagcatgctcaaacacttcatgagttttgtgccgcctccaaggctcaacacca 49610721  T
Q  128 aacaatgcttcaaagttatttgttcaatgaaaggacaacaagaaatgagatgctcaattgcatgtccatcttccaaaagaacaatccacaatgacaatac 227  Q
    ||||| | ||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||  ||| | ||||||| ||   |||||||||||||||    
T  49610720 aacaacgattcaaagttatatgttcaatcaaaggacaacaagaaatgagatgttcaattgcatgctcatttcccaaaaggacttcccacaatgacaatac 49610621  T
Q  228 tctcaatgnnnnnnncttaattgactgattcatgaatgcttgatcaactctgatnnnnnnnttcaacaccaacttggtaagtgattttgcttcgattaca 327  Q
    | |||| |       |||||||||||||| ||||||||||||||||| ||||||        |||| |||||||||||||||||||||||||| ||||||    
T  49610620 tatcaacgaaaaaaacttaattgactgatgcatgaatgcttgatcaattctgattccccccatcaataccaacttggtaagtgattttgcttcaattaca 49610521  T
Q  328 cctgtcggtaaatcatagcatttgccatgaccttcctcaatgtagttgggaccacatggcaaacaaagctctactacttcaacaccacttccacttgccg 427  Q
    ||  |||||||  ||||||||| | |||||||||||||    | |||||||||||  ||||||||||| |||| |||||||||||||||| |||||| ||    
T  49610520 cccatcggtaatacatagcattcgtcatgaccttcctcgtcatggttgggaccactgggcaaacaaagttctagtacttcaacaccactttcacttgtcg 49610421  T
Q  428 acttcaaccaaagatcaacatgctttgacatgtaatgaagctcaaaacggttcaatataatcttacattctttgat 503  Q
    | |||||||||| || ||||| |||||||||| |||||||||||||| |||||||| |||||||||||||||||||    
T  49610420 atttcaaccaaaaattaacatcctttgacatgcaatgaagctcaaaatggttcaatgtaatcttacattctttgat 49610345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 3e-43; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 135 - 474
Target Start/End: Complemental strand, 5203794 - 5203455
Alignment:
Q  135 cttcaaagttatttgttcaatgaaaggacaacaagaaatgagatgctcaattgcatgtccatcttccaaaagaacaatccacaatgacaatactctcaat 234  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||  | |||| |||  |||||||||||||||| | ||     
T  5203794 cttcaaagttatatgttcaatcaaaggacaacaagaaatgagatgctcaattgcatgttcatctctcgaaaggacagcccacaatgacaatacttttaac 5203695  T
Q  235 gnnnnnnncttaattgactgattcatgaatgcttgatcaactctgatnnnnnnnttcaacaccaacttggtaagtgattttgcttcgattacacctgtcg 334  Q
    |        |||||||| ||||||||||| ||   ||||||||| ||        ||||||||||||  ||||| |||||  |||| ||||||||  |||    
T  5203694 gagaaaaatttaattgaatgattcatgaacgcagtatcaactctaattccccccatcaacaccaactcagtaagcgatttgacttcaattacaccattcg 5203595  T
Q  335 gtaaatcatagcatttgccatgaccttcctcaatgtagttgggaccacatggcaaacaaagctctactacttcaacaccacttccacttgccgacttcaa 434  Q
    ||||  |||||||||  ||  ||||||| |||   | || |||||||   |||||||||||||||| || ||||||||||| | |||||||  |||||||    
T  5203594 gtaagacatagcattcaccgcgaccttcttcatcctggtcgggaccatcaggcaaacaaagctctagtaattcaacaccacattcacttgctaacttcaa 5203495  T
Q  435 ccaaagatcaacatgctttgacatgtaatgaagctcaaaa 474  Q
    |||| |||||||||  ||||||||||||||||||||||||    
T  5203494 ccaatgatcaacatcttttgacatgtaatgaagctcaaaa 5203455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 115 - 281
Target Start/End: Complemental strand, 5174665 - 5174499
Alignment:
Q  115 gggctcaaaactgaacaatgcttcaaagttatttgttcaatgaaaggacaacaagaaatgagatgctcaattgcatgtccatcttccaaaagaacaatcc 214  Q
    |||||||| |||||||||  |||||||||||| |||||||| |||||||||| |||||| |||| ||||||||||||  ||| |||  |||| ||   ||    
T  5174665 gggctcaacactgaacaacacttcaaagttatatgttcaatcaaaggacaacgagaaatcagattctcaattgcatgctcatattcacaaaggacctccc 5174566  T
Q  215 acaatgacaatactctcaatgnnnnnnncttaattgactgattcatgaatgcttgatcaactctgat 281  Q
    |||||||||||||||||||||       ||||||||| | ||||||||||| |||||||||||||||    
T  5174565 acaatgacaatactctcaatgagaaacacttaattgaattattcatgaatgattgatcaactctgat 5174499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 1797431 - 1797510
Alignment:
Q  17 catctatatatacctcttgtattccatgaacatcaactgtcttgagctttggtagaccatgcatgctcaaagacttcatg 96  Q
    |||| ||||||||||| || ||||| | |||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  1797431 catcaatatatacctcctggattccttcaacatcaactgtcttgagcttaagtagaccatgcatgctcaaagacttcatg 1797510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 141 - 448
Target Start/End: Complemental strand, 5193550 - 5193243
Alignment:
Q  141 agttatttgttcaatgaaaggacaacaagaaatgagatgctcaattgcatgtccatcttccaaaagaacaatccacaatgacaatactctcaatgnnnnn 240  Q
    |||||| |||||||| ||||||||||||||||||||||| || ||||||||| | |||  || ||| |||  |||||||||||||||||| | ||         
T  5193550 agttatatgttcaatcaaaggacaacaagaaatgagatgttcgattgcatgttcgtctctcacaaggacaccccacaatgacaatactcttagtgagaaa 5193451  T
Q  241 nncttaattgactgattcatgaatgcttgatcaactctgatnnnnnnnttcaacaccaacttggtaagtgattttgcttcgattacacctgtcggtaaat 340  Q
       |||||||| |||||||||||||||  |||||||| |||        ||||||| ||||  ||||| |||||  |||| ||||||||| | ||||       
T  5193450 aatttaattgaatgattcatgaatgctgtatcaactccgattcccggcatcaacactaactcagtaagcgatttgacttcaattacaccttttggtagga 5193351  T
Q  341 catagcatttgccatgaccttcctcaatgtagttgggaccacatggcaaacaaagctctactacttcaacaccacttccacttgccgacttcaaccaaag 440  Q
    ||||| ||||      |||||| |||   | || |||||||   |||||| |||| |||| |||||||||||||||| ||| |||| |||||||||||||    
T  5193350 catagtatttaatgccaccttcttcatcctggtcgggaccatcaggcaaataaaggtctagtacttcaacaccactttcacctgccaacttcaaccaaag 5193251  T
Q  441 atcaacat 448  Q
    ||||||||    
T  5193250 atcaacat 5193243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 115 - 192
Target Start/End: Complemental strand, 6230252 - 6230175
Alignment:
Q  115 gggctcaaaactgaacaatgcttcaaagttatttgttcaatgaaaggacaacaagaaatgagatgctcaattgcatgt 192  Q
    |||||||| | |||||||| | |||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||    
T  6230252 gggctcaacattgaacaatccctcaaagttatatgttcaattaaaggacaacaagaaatgagatgttcaattgcatgt 6230175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 5174790 - 5174710
Alignment:
Q  17 catctatatatacctcttgtattccatgaacatcaactgtcttgagctttggtagaccatgcatgctcaaagacttcatga 97  Q
    |||| ||||| |||||||||||||| ||||||||||||||||| ||||||| || |||| ||||||||||||| |||||||    
T  5174790 catcaatataaacctcttgtattccttgaacatcaactgtcttcagctttgataaaccacgcatgctcaaagatttcatga 5174710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 403 - 474
Target Start/End: Complemental strand, 5170229 - 5170158
Alignment:
Q  403 acttcaacaccacttccacttgccgacttcaaccaaagatcaacatgctttgacatgtaatgaagctcaaaa 474  Q
    |||||||||||||||  ||||||| ||||||||||| ||||||||| | ||||||||||| |||||||||||    
T  5170229 acttcaacaccactttgacttgccaacttcaaccaatgatcaacatccattgacatgtaaggaagctcaaaa 5170158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 372 - 445
Target Start/End: Complemental strand, 6230046 - 6229973
Alignment:
Q  372 gttgggaccacatggcaaacaaagctctactacttcaacaccacttccacttgccgacttcaaccaaagatcaa 445  Q
    ||||||||||   ||||||||||| | || |||||||||||||||| |||||||| ||||||||||||||||||    
T  6230046 gttgggaccattaggcaaacaaagttgtagtacttcaacaccactttcacttgccaacttcaaccaaagatcaa 6229973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 5170575 - 5170507
Alignment:
Q  28 acctcttgtattccatgaacatcaactgtcttgagctttggtagaccatgcatgctcaaagacttcatg 96  Q
    ||||||| |||||| ||||||||||||||||| |||||| |||| ||||| ||||||||||| ||||||    
T  5170575 acctcttttattccttgaacatcaactgtctttagctttagtaggccatgtatgctcaaagatttcatg 5170507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 5203939 - 5203859
Alignment:
Q  17 catctatatatacctcttgtattccatgaacatcaactgtcttgagctttggtagaccatgcatgctcaaagacttcatga 97  Q
    |||| ||||| ||||| |||||||| ||||||||||||||||| | |||  |||||||||||||  |||||||||||||||    
T  5203939 catcaatataaacctcctgtattccttgaacatcaactgtcttcaacttaagtagaccatgcatattcaaagacttcatga 5203859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 385 - 474
Target Start/End: Complemental strand, 5174416 - 5174327
Alignment:
Q  385 ggcaaacaaagctctactacttcaacaccacttccacttgccgacttcaaccaaagatcaacatgctttgacatgtaatgaagctcaaaa 474  Q
    ||||||||||| |||| |||||||||||||| | ||||||||   ||||||||||||||||||| |  ||||||  || |||||||||||    
T  5174416 ggcaaacaaagttctagtacttcaacaccacattcacttgccagattcaaccaaagatcaacatccgctgacattgaacgaagctcaaaa 5174327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 412 - 459
Target Start/End: Complemental strand, 5186492 - 5186445
Alignment:
Q  412 ccacttccacttgccgacttcaaccaaagatcaacatgctttgacatg 459  Q
    |||||| |||||||| ||||||||||||||||||||| ||||||||||    
T  5186492 ccactttcacttgccaacttcaaccaaagatcaacattctttgacatg 5186445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 6230372 - 6230297
Alignment:
Q  22 atatatacctcttgtattccatgaacatcaactgtcttgagctttggtagaccatgcatgctcaaagacttcatga 97  Q
    ||||| |||||||||||||| ||||||||||| ||||| | |||  ||||||||| ||| ||||||||||| ||||    
T  6230372 atataaacctcttgtattccttgaacatcaaccgtcttcaacttaagtagaccatccatactcaaagacttgatga 6230297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 235
Target Start/End: Original strand, 1797519 - 1797619
Alignment:
Q  135 cttcaaagttatttgttcaatgaaaggacaacaagaaatgagatgctcaattgcatgtccatcttccaaaagaacaatccacaatgacaatactctcaat 234  Q
    |||||||||||| |||||||| || |||||||||||||| | ||| |||||| ||||| | |||| | |||  |||  ||||||||||| |||||| |||    
T  1797519 cttcaaagttatatgttcaatcaacggacaacaagaaataaaatgttcaattacatgttcgtctttcgaaacgacatcccacaatgacagtactcttaat 1797618  T
Q  235 g 235  Q
    |    
T  1797619 g 1797619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 278
Target Start/End: Complemental strand, 5170365 - 5170330
Alignment:
Q  243 cttaattgactgattcatgaatgcttgatcaactct 278  Q
    ||||||||| ||||||||||||||||||||||||||    
T  5170365 cttaattgaatgattcatgaatgcttgatcaactct 5170330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 459
Target Start/End: Complemental strand, 6233162 - 6233115
Alignment:
Q  412 ccacttccacttgccgacttcaaccaaagatcaacatgctttgacatg 459  Q
    |||||| || ||||| ||||||||||||||||||||| ||||||||||    
T  6233162 ccactttcatttgccaacttcaaccaaagatcaacattctttgacatg 6233115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 16472354 - 16472299
Alignment:
Q  137 tcaaagttatttgttcaatgaaaggacaacaagaaatgagatgctcaattgcatgt 192  Q
    |||||||||| |||||||| |||||||||  ||||||||  |||||||||||||||    
T  16472354 tcaaagttatatgttcaatcaaaggacaatgagaaatgaattgctcaattgcatgt 16472299  T

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