View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6976_low_4 (Length: 495)
Name: NF6976_low_4
Description: NF6976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6976_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 227 - 490
Target Start/End: Complemental strand, 43316859 - 43316592
Alignment:
| Q |
227 |
taatggctgggggaggattgacaaatggagggccaggcaaaagagctcatctctatgagcacaaattcactgcttattttgcctttacctgtgttgttgg |
326 |
Q |
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| T |
43316859 |
taatggctggtggaggattgacaaatggaggtccaggcaaaagagctcatctctatgagcacaaattcactgcttattttgcctttacctgtgttgttgg |
43316760 |
T |
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| Q |
327 |
agctcttggtggttctctttttggttatgatcttggtgtttcaggtatattaattcttccttcaattcaattcaactggtgtttttatgaatatgagtca |
426 |
Q |
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| T |
43316759 |
agctcttggtggttctctttttggttatgatcttggtgtttcaggtatattaattcttccttcaattcaattcaactggtgtttttatgaatatgagtca |
43316660 |
T |
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| Q |
427 |
aaaaatatatcttcaacactggta----taaactctttagattcaatttttgttttgctgatgtccat |
490 |
Q |
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| T |
43316659 |
aaaaatatatcttcaacactggtataattaaactctttagattcaatttttgttttgttaatgtccat |
43316592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 4 - 184
Target Start/End: Complemental strand, 43317083 - 43316898
Alignment:
| Q |
4 |
atctcattttagctagtaat---tagattggatgaaattgagacttgctgacgtgtatacactagtannnnnnnnn--gaacaagtgtgtacacttggag |
98 |
Q |
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| T |
43317083 |
atctcattttagctagtaataattagattggatgaaattgagatttgctgacgtgtatacactagtatatttttttttgaacaagtgtgtacacttggag |
43316984 |
T |
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| Q |
99 |
ttgactaattggcagattaactattattagtcatttgaaagcaaagagtccttccttatattaatgtgagttcattttgttttgtt |
184 |
Q |
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| T |
43316983 |
ttgactaattggcagattaactattattagtcatttgaaagcaaagattccttccttatattaatgtgagttcattttgttttgtt |
43316898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 320 - 372
Target Start/End: Original strand, 43379281 - 43379333
Alignment:
| Q |
320 |
ttgttggagctcttggtggttctctttttggttatgatcttggtgtttcaggt |
372 |
Q |
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| T |
43379281 |
ttgttggtgctcttggtggctctctctttggatatgatcttggtgtttcaggt |
43379333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 372
Target Start/End: Original strand, 33556679 - 33556728
Alignment:
| Q |
323 |
ttggagctcttggtggttctctttttggttatgatcttggtgtttcaggt |
372 |
Q |
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| T |
33556679 |
ttggagcacttggtggggctctatttggatatgatcttggtgtttcaggt |
33556728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 372
Target Start/End: Original strand, 33563897 - 33563946
Alignment:
| Q |
323 |
ttggagctcttggtggttctctttttggttatgatcttggtgtttcaggt |
372 |
Q |
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| T |
33563897 |
ttggagcacttggtggggctctatttggatatgatcttggtgtttcaggt |
33563946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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