View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6976_low_6 (Length: 442)

Name: NF6976_low_6
Description: NF6976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6976_low_6
NF6976_low_6
[»] chr8 (10 HSPs)
chr8 (10-431)||(3388885-3389306)
chr8 (62-386)||(31177846-31178170)
chr8 (173-414)||(3319929-3320169)
chr8 (118-263)||(3366320-3366465)
chr8 (233-386)||(31178529-31178682)
chr8 (233-386)||(31179041-31179194)
chr8 (20-172)||(3319707-3319859)
chr8 (225-348)||(3405480-3405593)
chr8 (109-171)||(3319844-3319906)
chr8 (227-263)||(3430518-3430554)
[»] chr5 (6 HSPs)
chr5 (92-335)||(15805257-15805493)
chr5 (60-150)||(12597280-12597370)
chr5 (227-285)||(12597423-12597481)
chr5 (60-193)||(30419887-30420020)
chr5 (67-160)||(15805136-15805229)
chr5 (119-172)||(15805236-15805289)
[»] chr3 (1 HSPs)
chr3 (64-352)||(6903432-6903719)
[»] chr2 (2 HSPs)
chr2 (223-315)||(14765581-14765672)
chr2 (319-371)||(14765395-14765447)
[»] scaffold0468 (1 HSPs)
scaffold0468 (230-351)||(2845-2965)
[»] chr7 (4 HSPs)
chr7 (216-317)||(13938456-13938556)
chr7 (216-317)||(39287484-39287584)
chr7 (352-401)||(13938580-13938629)
chr7 (227-271)||(8369937-8369981)


Alignment Details
Target: chr8 (Bit Score: 410; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 10 - 431
Target Start/End: Complemental strand, 3389306 - 3388885
Alignment:
Q  10 atggacatcaagtcatcaaatgctatggaagttgccccatccagtgacgcaaaaatggagccattacatgaagtggaattgaaaccgtcacccaatgtaa 109  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3389306 atggaaatcgagtcatcaaatgctatggaagttgccccatccagtgacgcaaaaatggagccattacatgaagtggaattgaaaccgtcacccaatgtaa 3389207  T
Q  110 aaatggatccatcagctgaagaggaagtacaaccatcacttgatgtgaaaatggaaccatcagttgttgtcaagaatgaaccattaccgaagacaagtag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3389206 aaatggatccatcagctgaagaggaagtacaaccatcacttgatgtgaaaatggaaccatcagttgttgtcaagaatgaaccattactgaagacaagtag 3389107  T
Q  210 aaaaaactttacgagacttgcaaagagagtgggagaatgtttatgcttgaaccataattgagatctcaacaatttttgattgagcacgcctattgtccta 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3389106 aaaaaactttacgagacttgcaaagagagtgggagaatgtttatgcttgaaccataattgagatctcaacaatttttgattgagcacgcctattgtccta 3389007  T
Q  310 atatggaactcccttgtatgtgttttgtaatatttttctgggagggaggattgacaatgcttgggcattaatgtgatcgattgcaggatcctattttctt 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3389006 atatggaactcccttgtatgtgttttgtaatatttttctgggagggaggattgacaatgcttgggcattaatgtgatcgattgcaggatcctattttctt 3388907  T
Q  410 ctctcatgtggtctttgatgtc 431  Q
    ||||||||||||||||||||||    
T  3388906 ctctcatgtggtctttgatgtc 3388885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 62 - 386
Target Start/End: Original strand, 31177846 - 31178170
Alignment:
Q  62 aaatggagccattacatgaagtggaattgaaaccgtcacccaatgtaaaaatggatccatcagctgaagaggaagtacaaccatcacttgatgtgaaaat 161  Q
    |||| ||||||||||||||||||||| || |||| ||||| ||||| |||| ||| ||||||||||||||||| || || |||||||||||||||||||     
T  31177846 aaattgagccattacatgaagtggaaatgcaaccatcacctaatgtgaaaacggagccatcagctgaagaggacgtgcagccatcacttgatgtgaaaac 31177945  T
Q  162 ggaaccatcagttgttgtcaagaatgaaccattaccgaagacaagtagaaaaaactttacgagacttgcaaagagagtgggagaatgtttatgcttgaac 261  Q
    |||||||| | |||||||||||||||||||| |||||||||||| |||||||| ||| || ||||||||||||||| ||||||||||||||||||||| |    
T  31177946 ggaaccattacttgttgtcaagaatgaaccaataccgaagacaaatagaaaaatcttcacaagacttgcaaagagactgggagaatgtttatgcttgatc 31178045  T
Q  262 cataattgagatctcaacaatttttgattgagcacgcctattgtcctaatatggaactcccttgtatgtgttttgtaatatttttctgggagggaggatt 361  Q
    || |||||||||||   ||| ||||||||| |||| ||  ||||||||| |||||| | ||||||||||||||||||||||||||| |||||||||||||    
T  31178046 cagaattgagatctttgcaaattttgattgggcacaccggttgtcctaacatggaatttccttgtatgtgttttgtaatatttttcagggagggaggatt 31178145  T
Q  362 gacaatgcttgggcattaatgtgat 386  Q
    ||||||||||||| |||||||||||    
T  31178146 gacaatgcttgggtattaatgtgat 31178170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 173 - 414
Target Start/End: Original strand, 3319929 - 3320169
Alignment:
Q  173 ttgttgtcaagaatgaaccattaccgaagacaagtagaaaaaactttacgagacttgcaaagagagtgggagaatgtttatgcttgaaccataattgaga 272  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||||    
T  3319929 ttgttgtcaaaaatgaaccattaccgaagacaagtagaaaaatctttacaagactggcaaagagagtgggaaaatgtttatgcttgaaccaaaattgaga 3320028  T
Q  273 tctcaacaatttttgattgagcacgcctattgtcctaatatggaactcccttgtatgtgttttgtaatatttttctgggagggaggattgacaatgcttg 372  Q
    ||||| ||||||||| |||| || |||| ||||| ||| ||| || |||||  | ||||||| |||||| ||||| ||||||||||||||||||||||||    
T  3320029 tctcagcaatttttgtttgaacatgcctgttgtcataacatgaaattccct--tctgtgtttagtaataattttcagggagggaggattgacaatgcttg 3320126  T
Q  373 ggcattaatgtgatcgattgcaggatcct-attttcttctctc 414  Q
    || ||||||||||| ||||| |||||||| |||||||||||||    
T  3320127 ggaattaatgtgattgattgtaggatcctgattttcttctctc 3320169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 118 - 263
Target Start/End: Original strand, 3366320 - 3366465
Alignment:
Q  118 ccatcagctgaagaggaagtacaaccatcacttgatgtgaaaatggaaccatcagttgttgtcaagaatgaaccattaccgaagacaagtagaaaaaact 217  Q
    |||||||||||||||||||||||||||||||   |||||||||||||||||||| ||||||||||||||||||||||||| || |||| |||||||| ||    
T  3366320 ccatcagctgaagaggaagtacaaccatcacccaatgtgaaaatggaaccatcacttgttgtcaagaatgaaccattaccaaacacaaatagaaaaatct 3366419  T
Q  218 ttacgagacttgcaaagagagtgggagaatgtttatgcttgaacca 263  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||    
T  3366420 ttacaagacttgcaaagagagtgggagaatgtttatgcatgaacca 3366465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 233 - 386
Target Start/End: Original strand, 31178529 - 31178682
Alignment:
Q  233 agagagtgggagaatgtttatgcttgaaccataattgagatctcaacaatttttgattgagcacgcctattgtcctaatatggaactcccttgtatgtgt 332  Q
    ||||| ||||||||||||||||||||| ||| |||||||||||   ||| ||||||||| |||| ||  ||||||||| |||||| | ||||||||||||    
T  31178529 agagactgggagaatgtttatgcttgatccagaattgagatctttgcaaattttgattgggcacaccggttgtcctaacatggaatttccttgtatgtgt 31178628  T
Q  333 tttgtaatatttttctgggagggaggattgacaatgcttgggcattaatgtgat 386  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  31178629 tttgtaatatttttcagggagggaggattgacaatgcttgggtattaatgtgat 31178682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 233 - 386
Target Start/End: Original strand, 31179041 - 31179194
Alignment:
Q  233 agagagtgggagaatgtttatgcttgaaccataattgagatctcaacaatttttgattgagcacgcctattgtcctaatatggaactcccttgtatgtgt 332  Q
    ||||| ||||||||||||||||||||| ||| |||||||||||   ||| ||||||||| |||| ||  ||||||||| |||||| | ||||||||||||    
T  31179041 agagactgggagaatgtttatgcttgatccagaattgagatctttgcaaattttgattgggcacaccggttgtcctaacatggaatttccttgtatgtgt 31179140  T
Q  333 tttgtaatatttttctgggagggaggattgacaatgcttgggcattaatgtgat 386  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  31179141 tttgtaatatttttcagggagggaggattgacaatgcttgggtattaatgtgat 31179194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 20 - 172
Target Start/End: Original strand, 3319707 - 3319859
Alignment:
Q  20 agtcatcaaatgctatggaagttgccccatccagtgacgcaaaaatggagccattacatgaagtggaattgaaaccgtcacccaatgtaaaaatggatcc 119  Q
    ||||||||||| |||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||  ||  |    
T  3319707 agtcatcaaatactatggaagttgacccatctactgacgcaaaaatggagccattacatgaagtggaattccaaccatcacccaatgtaaaaaccgagac 3319806  T
Q  120 atcagctgaagaggaagtacaaccatcacttgatgtgaaaatggaaccatcag 172  Q
    ||||||||||| |||| |||||||||||||  || |||||| ||| |||||||    
T  3319807 atcagctgaagtggaaatacaaccatcactgaatttgaaaacggagccatcag 3319859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 225 - 348
Target Start/End: Complemental strand, 3405593 - 3405480
Alignment:
Q  225 acttgcaaagagagtgggagaatgtttatgcttgaaccataattgagatctcaacaatttttgattgagcacgcctattgtcctaatatggaactccctt 324  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||||||         ||| | |||||||| ||||||||||| || | ||||||    
T  3405593 acttgcaaagagagtgggaggatgtttatgcttgaaccagaattgagatctca---------gatagggcacgcct-ttgtcctaatacgggattccctt 3405504  T
Q  325 gtatgtgttttgtaatatttttct 348  Q
    ||||||||||| ||||||||||||    
T  3405503 gtatgtgttttctaatatttttct 3405480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 3319844 - 3319906
Alignment:
Q  109 aaaatggatccatcagctgaagaggaagtacaaccatcacttgatgtgaaaatggaaccatca 171  Q
    |||| ||| ||||||||||||||||||||||||  ||||| | ||||||||||||| ||||||    
T  3319844 aaaacggagccatcagctgaagaggaagtacaattatcacctaatgtgaaaatggagccatca 3319906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 263
Target Start/End: Original strand, 3430518 - 3430554
Alignment:
Q  227 ttgcaaagagagtgggagaatgtttatgcttgaacca 263  Q
    ||||||||||||||||||||||||||||| |||||||    
T  3430518 ttgcaaagagagtgggagaatgtttatgcatgaacca 3430554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 5e-57; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 92 - 335
Target Start/End: Original strand, 15805257 - 15805493
Alignment:
Q  92 aaccgtcacccaatgtaaaaatggatccatcagctgaagaggaagtacaaccatcacttgatgtgaaaatggaaccatcagttgttgtcaagaatgaacc 191  Q
    |||| ||||| ||||| ||||| || ||||||||| ||||||||| |||||||||||  ||||||||||||||||||||| ||||   ||||||||||||    
T  15805257 aaccatcacctaatgtgaaaatagagccatcagctaaagaggaagcacaaccatcacccgatgtgaaaatggaaccatcacttgt---caagaatgaacc 15805353  T
Q  192 attaccgaagacaagtagaaaaaactttacgagacttgcaaagagagtgggagaatgtttatgcttgaaccataattgagatctcaacaatttttgattg 291  Q
    |||||||||  ||| ||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||     ||||| |||||||||    
T  15805354 attaccgaacgcaaatagaaaaatatttacaagacttgcaaagagagtgggagaatgtttatgcttgaaccagaaatgag----taacaacttttgattg 15805449  T
Q  292 agcacgcctattgtcctaatatggaactcccttgtatgtgtttt 335  Q
     ||| |||||||||||| |||||||| |||| ||||||||||||    
T  15805450 ggcatgcctattgtcctgatatggaattcccatgtatgtgtttt 15805493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 60 - 150
Target Start/End: Original strand, 12597280 - 12597370
Alignment:
Q  60 aaaaatggagccattacatgaagtggaattgaaaccgtcacccaatgtaaaaatggatccatcagctgaagaggaagtacaaccatcactt 150  Q
    |||||| ||||||||||||||||||||  || |||| ||||| ||||  |||| ||| |||||||||||||||||||||| ||||||||||    
T  12597280 aaaaattgagccattacatgaagtggaggtgcaaccatcaccgaatgggaaaacggagccatcagctgaagaggaagtacgaccatcactt 12597370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 12597423 - 12597481
Alignment:
Q  227 ttgcaaagagagtgggagaatgtttatgcttgaaccataattgagatctcaacaatttt 285  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||| || ||||||||    
T  12597423 ttgcaaagagagtgggagaatgtttgtgcttgaaccaaaattgagatatccacaatttt 12597481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 60 - 193
Target Start/End: Original strand, 30419887 - 30420020
Alignment:
Q  60 aaaaatggagccattacatgaagtggaattgaaaccgtcacccaatgtaaaaatggatccatcagctgaagaggaagtacaaccatcacttgatgtgaaa 159  Q
    ||||||||||||||| |  ||||||||| || || ||   || ||||| ||||| ||||||||| ||||||||||||||||| |||| ||||||||||||    
T  30419887 aaaaatggagccattgcccgaagtggaagtgcaaacgcagcctaatgtgaaaatagatccatcacctgaagaggaagtacaatcatcccttgatgtgaaa 30419986  T
Q  160 atggaaccatcagttgttgtcaagaatgaaccat 193  Q
    |  ||  ||||| || || || ||||||||||||    
T  30419987 aatgaggcatcacttattatccagaatgaaccat 30420020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 67 - 160
Target Start/End: Original strand, 15805136 - 15805229
Alignment:
Q  67 gagccattacatgaagtggaattgaaaccgtcacccaatgtaaaaatggatccatcagctgaagaggaagtacaaccatcacttgatgtgaaaa 160  Q
    ||||||||||||||||||||| || || | ||||  | ||| ||||||||  |||| || |||||| || ||||||||||||||||||||||||    
T  15805136 gagccattacatgaagtggaagtgcaatcatcacttagtgtgaaaatggaggcatcggccgaagagcaactacaaccatcacttgatgtgaaaa 15805229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 15805236 - 15805289
Alignment:
Q  119 catcagctgaagaggaagtacaaccatcacttgatgtgaaaatggaaccatcag 172  Q
    |||||||||||||||| ||||||||||||| | |||||||||| || |||||||    
T  15805236 catcagctgaagaggatgtacaaccatcacctaatgtgaaaatagagccatcag 15805289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 64 - 352
Target Start/End: Complemental strand, 6903719 - 6903432
Alignment:
Q  64 atggagccattacatgaagtggaattgaaaccgtcacccaatgtaaaaatggatccatcagctgaagaggaagtacaaccatcacttgatgtgaaaatgg 163  Q
    ||||||||||||| |||| ||||| || |||| ||| | ||||| |||| |||  ||| |  |||||| ||||| |||||||||||||||||||| ||||    
T  6903719 atggagccattacctgaactggaagtgcaaccatcatctaatgtgaaaagggagtcattacttgaagatgaagtgcaaccatcacttgatgtgaagatgg 6903620  T
Q  164 aaccatcagttgttgtcaagaatgaaccattaccgaagacaagtagaaaaaactttacgagacttgcaaagagagtgggagaatgtttatgcttgaacca 263  Q
    ||||||||  | |  |||| ||||  |||||||| |||| || || |||||  |||   ||| || |||||| | |||||||||||||||||||||| |     
T  6903619 aaccatcacctatcatcaacaatgggccattacctaagagaaatacaaaaatatttgtaagattttcaaagaaattgggagaatgtttatgcttgaatcg 6903520  T
Q  264 taattgagatctcaacaatttttgattgagcacgcctattgtcctaatatggaactcccttgtatgtgttttgtaatatttttctggga 352  Q
     ||| |||||||||| ||||||| |||| |||| ||| |||||| ||| | ||| | |||||||| ||||||||||||||||| |||||    
T  6903519 gaatagagatctcaataatttttaattgtgcactcct-ttgtccaaattttgaatttccttgtatatgttttgtaatatttttgtggga 6903432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 223 - 315
Target Start/End: Complemental strand, 14765672 - 14765581
Alignment:
Q  223 agacttgcaaagagagtgggagaatgtttatgcttgaaccataattgagatctcaacaatttttgattgagcacgcctattgtcctaatatgg 315  Q
    ||||| ||||||||||| ||| ||||||||||||||||||| ||| |||||||||||||||||||||| |||| |||  ||||||||||||||    
T  14765672 agactcgcaaagagagtaggaaaatgtttatgcttgaaccaaaatcgagatctcaacaatttttgattaagcaggcc-gttgtcctaatatgg 14765581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 371
Target Start/End: Complemental strand, 14765447 - 14765395
Alignment:
Q  319 tcccttgtatgtgttttgtaatatttttctgggagggaggattgacaatgctt 371  Q
    |||||||||||  ||||||||||||||||||| ||||||||  ||||||||||    
T  14765447 tcccttgtatggtttttgtaatatttttctggaagggaggacggacaatgctt 14765395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 230 - 351
Target Start/End: Complemental strand, 2965 - 2845
Alignment:
Q  230 caaagagagtgggagaatgtttatgcttgaaccataattgagatctcaacaatttttgattgagcacgcctattgtcctaatatggaactcccttgtatg 329  Q
    |||||| |||||||||||||||||||||||| || ||| ||| |||| ||||||||| |||| |||  ||| ||||||||||   | | ||| |||||||    
T  2965 caaagaaagtgggagaatgtttatgcttgaatcagaatagaggtctcgacaatttttaattgcgcatacct-ttgtcctaattaaggattcctttgtatg 2867  T
Q  330 tgttttgtaatatttttctggg 351  Q
    ||| ||| ||||||||||||||    
T  2866 tgtcttgcaatatttttctggg 2845  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 317
Target Start/End: Original strand, 13938456 - 13938556
Alignment:
Q  216 ctttacgagacttgcaaagagagtgggagaatgtttatgcttgaaccataattgagatctcaacaatttttgattgagcacgcctattgtcctaatatgg 315  Q
    |||||| ||||||||||||||||| ||| ||||||||||||||||| | |||| ||| ||||  |||||||||||| |||| |||| |||| | ||||||    
T  13938456 ctttacaagacttgcaaagagagttggaaaatgtttatgcttgaacaaaaattaaga-ctcataaatttttgattgggcacacctaatgtcatgatatgg 13938554  T
Q  316 aa 317  Q
    ||    
T  13938555 aa 13938556  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 317
Target Start/End: Original strand, 39287484 - 39287584
Alignment:
Q  216 ctttacgagacttgcaaagagagtgggagaatgtttatgcttgaaccataattgagatctcaacaatttttgattgagcacgcctattgtcctaatatgg 315  Q
    |||||| ||||||||||||||||| ||| ||||||||||||||||| | |||| ||| ||||  |||||||||||| |||| |||| |||| | ||||||    
T  39287484 ctttacaagacttgcaaagagagttggaaaatgtttatgcttgaacaaaaattaaga-ctcataaatttttgattgggcacacctaatgtcatgatatgg 39287582  T
Q  316 aa 317  Q
    ||    
T  39287583 aa 39287584  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 401
Target Start/End: Original strand, 13938580 - 13938629
Alignment:
Q  352 agggaggattgacaatgcttgggcattaatgtgatcgattgcaggatcct 401  Q
    |||||||||  ||||||| ||||||||||| |||| ||||||||||||||    
T  13938580 agggaggatgaacaatgcctgggcattaatttgattgattgcaggatcct 13938629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 271
Target Start/End: Complemental strand, 8369981 - 8369937
Alignment:
Q  227 ttgcaaagagagtgggagaatgtttatgcttgaaccataattgag 271  Q
    |||||||| |||| ||| ||||||||||||||||||| |||||||    
T  8369981 ttgcaaagggagtaggaaaatgtttatgcttgaaccaaaattgag 8369937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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