View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6977_high_1 (Length: 509)
Name: NF6977_high_1
Description: NF6977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6977_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 11 - 493
Target Start/End: Original strand, 39166426 - 39166908
Alignment:
| Q |
11 |
cacacacgcatattctaaaaaagatgaagggtgtataaagaatgtgaggcatcggtggagatgtacacggtctacttcaagattcgtatttaggcctatt |
110 |
Q |
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| T |
39166426 |
cacaaacgcatattctaaaaaagatgaagggtgtataaagaatgtgaggcatcggtggagatgtacacggtctacttcaagattcgtatttaggcctatt |
39166525 |
T |
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| Q |
111 |
ataatatgaatttaaaaatctcatgtatcagcatgtaccgcacccacattacgcgtacaaactttataggtgaggtgtgaaataagaaaaatatatgaaa |
210 |
Q |
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| T |
39166526 |
ataatatgaatttaaaaatctcatgtatcagcatgtaccgcacccacactacgcgtacaaactttataggtgaggtgtgaaataagaaaaatatatgaaa |
39166625 |
T |
|
| Q |
211 |
tcacttttgnnnnnnnataccttgaaaagggatttgaatagcagatatcctttgaaagaaacttgtattcctaacttggctccaattcccattgagaata |
310 |
Q |
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| T |
39166626 |
tcacttttgtttttttataccttgaaaagggtgttgaatagcagatatcctttgtaagaaacttgtattcctaacttggctccaattcccattgagaata |
39166725 |
T |
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| Q |
311 |
ccaaaagtctcatcaacatcaacaaccccttgtctaatataataacttccagaaagtgtccaataggcccaatccaaatcaagctcagctgccactgcca |
410 |
Q |
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| T |
39166726 |
ccaaaagtctcatcaacatcaacaaccccttgtctaatataataacttccagaaagtgtccaataggcccaatccaaatcaagctcagctgccactgcca |
39166825 |
T |
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| Q |
411 |
tgaagcagttaaagaacctgttttgggtcacatttttgcctcttaaatccaaaccaaactcactcacaaacaatggccatcct |
493 |
Q |
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| T |
39166826 |
tgaagcagttaaagaacctgttttggttcatatttttgcctcttaaatccaaaccaaactcactcacaaacaatggccatcct |
39166908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 273
Target Start/End: Original strand, 39168755 - 39168796
Alignment:
| Q |
232 |
ttgaaaagggatttgaatagcagatatcctttgaaagaaact |
273 |
Q |
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| T |
39168755 |
ttgaaaaggaagttgaatagcagatatcctttgtaagaaact |
39168796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 455 - 493
Target Start/End: Original strand, 37313763 - 37313801
Alignment:
| Q |
455 |
aaatccaaaccaaactcactcacaaacaatggccatcct |
493 |
Q |
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| T |
37313763 |
aaatccacaccaaactcactcacaaacaatggccatcct |
37313801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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