View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6977_high_4 (Length: 238)
Name: NF6977_high_4
Description: NF6977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6977_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 180137 - 180366
Alignment:
| Q |
1 |
ctaatcatcaatcttcttctctcctccatgacagaggctgacatcatctcctttgcttcctatgaaactgctcgaaccttatgggttgctattgaatctc |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
180137 |
ctaatcatcaatcttcttctctcctccatgacaaaggctgacatcatctcctttgcttcctatgaaactgctcgaaccttatgggttgctattgaatctc |
180236 |
T |
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| Q |
101 |
agttcaataacactgcacaaagggtgataagtccataactgattacttatttttagttaaaagtcttgttgacgaacttgcagttattgataagtctctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
180237 |
agttcaataacactgcacaaagggtgataagtccataactgattacttatttttagttaaaagtcttgctgacgaacttgcagttattgataagtctctt |
180336 |
T |
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| Q |
201 |
tctgatgatgatattaccctctttcttctc |
230 |
Q |
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|||||||||||||||||||||||| ||||| |
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| T |
180337 |
tctgatgatgatattaccctctttgttctc |
180366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 1700521 - 1700633
Alignment:
| Q |
1 |
ctaatcatcaatcttcttctctcctccatgacagaggctgacatcatctcctttgcttcctatgaaactgctcgaaccttatgggttgctattgaatctc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1700521 |
ctaatcatcaatcttcttctctcctccatgacagaggctgacagcatctcctttgcttcctatgaaactgctcgaaccttatgggttgctattgaatctc |
1700620 |
T |
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| Q |
101 |
agttcaataacac |
113 |
Q |
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||||||||||||| |
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| T |
1700621 |
agttcaataacac |
1700633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 113 - 230
Target Start/End: Original strand, 1700676 - 1700793
Alignment:
| Q |
113 |
ctgcacaaagggtgataagtccataactgattacttatttttagttaaaagtcttgttgacgaacttgcagttattgataagtctctttctgatgatgat |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1700676 |
ctgcacaaagggtgataagtccataactgattacttattttcagttaaaagtcttgctgacgaacttgcagttattgataagtctctttctgatgatgat |
1700775 |
T |
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| Q |
213 |
attaccctctttcttctc |
230 |
Q |
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|||||||| ||| ||||| |
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| T |
1700776 |
attaccctatttgttctc |
1700793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 96
Target Start/End: Original strand, 5399293 - 5399385
Alignment:
| Q |
4 |
atcatcaatcttcttctctcctccatgacagaggctgacatcatctcctttgcttcctatgaaactgctcgaaccttatgggttgctattgaa |
96 |
Q |
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||||||||||||||| ||||||| |||||||| || |||| || || ||||| |||||||| |||||| |||||| |||| ||| |||||| |
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| T |
5399293 |
atcatcaatcttcttatctcctctatgacagaagcagacagtatatcatttgcctcctatgacactgctaaaaccttgtgggatgccattgaa |
5399385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 96
Target Start/End: Original strand, 3540290 - 3540382
Alignment:
| Q |
4 |
atcatcaatcttcttctctcctccatgacagaggctgacatcatctcctttgcttcctatgaaactgctcgaaccttatgggttgctattgaa |
96 |
Q |
| |
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||||||||||||||| |||||| |||||||| || |||| || || ||||| |||||||| |||||| |||||| |||| ||| |||||| |
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| T |
3540290 |
atcatcaatcttcttatctcctttatgacagaagcagacagtatatcatttgcctcctatgacactgctaaaaccttgtgggatgccattgaa |
3540382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 26593819 - 26593779
Alignment:
| Q |
49 |
tcctttgcttcctatgaaactgctcgaaccttatgggttgc |
89 |
Q |
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|||||||| |||||||| |||||||||||| |||||||||| |
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| T |
26593819 |
tcctttgcctcctatgacactgctcgaaccctatgggttgc |
26593779 |
T |
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