View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6977_high_5 (Length: 227)
Name: NF6977_high_5
Description: NF6977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6977_high_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 54302648 - 54302874
Alignment:
| Q |
1 |
tttccaattttcaaattgatttgagttcagaaatgtcttcatcatttgatgcactccaaaaacaatcagctgccgtagtgataatatagacttcaatacc |
100 |
Q |
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| T |
54302648 |
tttccaattttcaaattgatttgagttaagaaatgtcttcatcatttgatgcactccaaaaacaatcagctgccgtagtgataatatggacttcaatacc |
54302747 |
T |
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| Q |
101 |
tcttaaagccaaatgatctgcaacaaattctctaatctgcagacaatttcaatgtaaagaaagagttaacacgatggcaactttagagcttgacattttg |
200 |
Q |
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| T |
54302748 |
tcttaaagccaaatgatccgcaacaaattctctaatctgcagacaatttgaatgtaaagaaagagctaacactatggcaactttagagcttgacattctg |
54302847 |
T |
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| Q |
201 |
aaaaaagtaaagggtgatttcagaata |
227 |
Q |
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| T |
54302848 |
aaaaaagtaaagggtgatttcagaata |
54302874 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 31306903 - 31306850
Alignment:
| Q |
92 |
ttcaatacctcttaaagccaaatgatctgcaacaaattctctaatctgcagaca |
145 |
Q |
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| T |
31306903 |
ttcaatacctcttagtgccatattttctgcaacaaaatctctaatctgcagaca |
31306850 |
T |
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