View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6977_low_1 (Length: 675)
Name: NF6977_low_1
Description: NF6977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6977_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 221 - 527
Target Start/End: Original strand, 22327861 - 22328167
Alignment:
| Q |
221 |
ctcgtcgaagagaatcagcagcagcggaggaggaggagaaatcgtggaggtacaaggaggtcacattgtccgttcaacaggacggaaagaccgtcacagt |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22327861 |
ctcgtcgaagagaatcagcagcagcggaggaggaggagaaatcgtggaggtacaaggaggtcacattgtccgttcaacaggacggaaagaccgtcacagt |
22327960 |
T |
|
| Q |
321 |
aaagtttgcaccgcgaaaggtccccgtgaccgccgtgtacgactctcagcccacactgcgattcaattctacgacgtgcaagatcgtctcggctacgacc |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22327961 |
aaagtttgcaccgcgaaaggtccccgtgaccgccgtgtacgactctcagcccacactgcgattcaattctacgacgtgcaagatcgtctcggctacgacc |
22328060 |
T |
|
| Q |
421 |
ggccaagtaaagcagttgattggctcattaaaaaagctaaatctgctatcgacgaactcgctcacctccccgcttggaaccccacagctacatgttcttc |
520 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22328061 |
ggccaagtaaagcagtcgattggctcattaaaaaagctaaatctgctatcgacgaactcgctcacctccccgcttggaaccccacagctacatgttcttc |
22328160 |
T |
|
| Q |
521 |
aacacca |
527 |
Q |
| |
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||||||| |
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| T |
22328161 |
aacacca |
22328167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 13 - 150
Target Start/End: Original strand, 22327653 - 22327790
Alignment:
| Q |
13 |
aatatctagatttagaaccacaaccagagtcacttgaaccaccnnnnnnncggtcttcttttcttccaccactaccacaccctaatccaccaacatcatt |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22327653 |
aatatctagatttagaaccacaaccagagtcacttgaaccaccaaaaaaacggtcttcttttcttccaccactaccacaccctaatccaccaacatcatt |
22327752 |
T |
|
| Q |
113 |
atctttctcttccatcgaatatgcaagaaagatgggag |
150 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
22327753 |
atctttctcttccatcgaatatgcaagaaagatgggag |
22327790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 551 - 657
Target Start/End: Original strand, 22328188 - 22328294
Alignment:
| Q |
551 |
aacaaatgaaatgtttcaccggcaatctccggtggacaacaatccagtaaccgcttctaccagtcaccgctcagcggcattagagcgaagaatgccacca |
650 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22328188 |
aacaaatgaaatgtttcaccggcaatctccggtggacaacaatccagtaaccgcttctaccagtcaccgctcagcggcattagagcgaagaatgccacca |
22328287 |
T |
|
| Q |
651 |
cacgaac |
657 |
Q |
| |
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||||||| |
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| T |
22328288 |
cacgaac |
22328294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 333 - 466
Target Start/End: Complemental strand, 39077414 - 39077281
Alignment:
| Q |
333 |
gcgaaaggtccccgtgaccgccgtgtacgactctcagcccacactgcgattcaattctacgacgtgcaagatcgtctcggctacgaccggccaagtaaag |
432 |
Q |
| |
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||||||||||| ||||| || ||||| ||| | ||||| ||||| || ||||||||||| || || ||||| ||||||||||||||| | || ||||||| |
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| T |
39077414 |
gcgaaaggtcctcgtgatcgacgtgttcgattatcagcacacacagcaattcaattctatgatgttcaagaccgtctcggctacgacagaccgagtaaag |
39077315 |
T |
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| Q |
433 |
cagttgattggctcattaaaaaagctaaatctgc |
466 |
Q |
| |
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| T |
39077314 |
ctgttgattggcttatcaaaaaggctaagtctgc |
39077281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 255 - 460
Target Start/End: Original strand, 32506380 - 32506585
Alignment:
| Q |
255 |
ggagaaatcgtggaggtacaaggaggtcacattgtccgttcaacaggacggaaagaccgtcacagtaaagtttgcaccgcgaaaggtccccgtgaccgcc |
354 |
Q |
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|||||||| ||||| || | |||||||||||| | | |||| ||| || ||||| ||||| |||||||||||||| |||||||| || | ||| | | |
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| T |
32506380 |
ggagaaatagtggaagttgacggaggtcacattataaggtcaagaggtcgaaaagatcgtcatagtaaagtttgcacggcgaaagggccgagagacagac |
32506479 |
T |
|
| Q |
355 |
gtgtacgactctcagcccacactgcgattcaattctacgacgtgcaagatcgtctcggctacgaccggccaagtaaagcagttgattggctcattaaaaa |
454 |
Q |
| |
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| || || ||||| ||||| || || ||| |||| ||||| || |||||||| || |||| || |||| ||||||||| |||||||||||||||| || |
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| T |
32506480 |
gcgttcgtctctcggcccataccgctattgaattttacgatgttcaagatcgactgggctttgataggcccagtaaagcacttgattggctcattaataa |
32506579 |
T |
|
| Q |
455 |
agctaa |
460 |
Q |
| |
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|||||| |
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| T |
32506580 |
agctaa |
32506585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 306 - 457
Target Start/End: Complemental strand, 30768467 - 30768316
Alignment:
| Q |
306 |
aaagaccgtcacagtaaagtttgcaccgcgaaaggtccccgtgaccgccgtgtacgactctcagcccacactgcgattcaattctacgacgtgcaagatc |
405 |
Q |
| |
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||||| |||||||| || |||| ||| | |||||||| || || ||| | || ||||||||||| ||||| || || |||||||||| || ||||||| |
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| T |
30768467 |
aaagatcgtcacagcaaggtttacacatcaaaaggtcctcgcgatcgcagggttcgactctcagcacacacagccatcgaattctacgatgttcaagatc |
30768368 |
T |
|
| Q |
406 |
gtctcggctacgaccggccaagtaaagcagttgattggctcattaaaaaagc |
457 |
Q |
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| |||||||||||| | ||||| |||||||| ||||||||||| || ||||| |
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| T |
30768367 |
gcctcggctacgacagaccaagcaaagcagtggattggctcatcaagaaagc |
30768316 |
T |
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