View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6977_low_3 (Length: 486)
Name: NF6977_low_3
Description: NF6977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6977_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 2 - 473
Target Start/End: Complemental strand, 29339445 - 29338974
Alignment:
| Q |
2 |
agtatcccactctctctttccatatcatcaaaacatgaataaagaagcatgtactccaattatgctcacaatttgagggagaacaaggctcaagttactg |
101 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
29339445 |
agtatccctctctctctttccatatcatcaaaacatgaataaagaagtatgtactccaattatgctcacaatttgagggagaacaaggctcaagttattg |
29339346 |
T |
|
| Q |
102 |
gagctgtatcccaaagtgttgaagaggcatccctaatttatctgtcaaatattatcgtttaaaattgtaaaaaggtggagagtactttttggatactgat |
201 |
Q |
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| T |
29339345 |
gagctgtatcccaaagtgttgaagaggcatccctaatttatctgtcaaatattatcgtttaaaattgtaaaaaggtggagagtactttttggatactgat |
29339246 |
T |
|
| Q |
202 |
ctaggagtattatatgcatacgggaataaggctatgacacctatactttagcaattttagagtatcgtagctttataggttctactctatatactaatgt |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29339245 |
ctaggagtattatatgcatacgggaataaggctatgacacctatactttagcaattttagagtatcgtagctttataggttctactctatatactaatgt |
29339146 |
T |
|
| Q |
302 |
gattatgtattgtaagatgttgctgtgtttgtcgatatcagtacatatttgatatcgattgacaaccgtcactatttcaaacacactatttctactctga |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29339145 |
gattatgtattgtaagatgttgctgtgtttgtcgatatcagtacatatttgatatcgattgacaaccgtcactatttcaagcacactatttctactctga |
29339046 |
T |
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| Q |
402 |
tgatgtgttcaatctttttattgggcagcttattaccgtggagcaatgggtatcttgcttgtgtatgatgtc |
473 |
Q |
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| T |
29339045 |
tgatgtgttcaatctttttattgggcagcttattaccgtggagcaatgggtatcttgcttgtgtatgatgtc |
29338974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 5 - 473
Target Start/End: Complemental strand, 29347258 - 29346781
Alignment:
| Q |
5 |
atcccactctctctttccatatcatcaaaacatgaataaagaagcatgt--actccaattatgctcacaatttgagggagaacaaggctcaagttactgg |
102 |
Q |
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||||| ||| |||||| |||||| |||||||||||||||||| | || | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29347258 |
atccctctccctcttttcatatcctcaaaacatgaataaaga-gtattttgactccaattatgctcacaatttgagggagaacaaggctcaagttactgg |
29347160 |
T |
|
| Q |
103 |
agctgtatcccaaagtgttgaagaggcatccctaatttatctgtcaaatattatcgtttaaaattgtaaaaaggtgga-gagtactttttggatactgat |
201 |
Q |
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||||||||||||||||||| || |||||||| |||||||||||||||||| |||| ||||||||| |||||||| ||| | | ||||||||||||||| |
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| T |
29347159 |
agctgtatcccaaagtgtt-aataggcatccttaatttatctgtcaaataatatcttttaaaattttaaaaaggaggaggttttttttttggatactgat |
29347061 |
T |
|
| Q |
202 |
ctaggagtattatatgcatacgggaataaggctatgacacctatactttagcaattttagagtatcgtagctttataggttctactctatatactaatgt |
301 |
Q |
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|||||||| ||||||||||||||||||| |||||||||| | | |||||||||||||||||||||| ||||||| |||||||||||||||||| |||||| |
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| T |
29347060 |
ctaggagtgttatatgcatacgggaatacggctatgacatcgacactttagcaattttagagtatcatagctttttaggttctactctatatagtaatgt |
29346961 |
T |
|
| Q |
302 |
gattatgtattgtaagatgttgctgtgtttgtcgatatcagtacatat-ttgatatcgattgacaaccgtcactatttcaaacacactat------ttct |
394 |
Q |
| |
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|||||||||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||||||| ||||| ||||||||||||||| |||| |
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| T |
29346960 |
gattatgtattgcaagatgttgctctgtttgtcaatatcagtacatatggtgatatcgattgacaaccatcactgtttcaaacacactatttctaattct |
29346861 |
T |
|
| Q |
395 |
actctga-tgatgtgttcaatctttttattgggcagcttattaccgtggagcaatgggtatcttgcttgtgtatgatgtc |
473 |
Q |
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||||||| ||| ||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
29346860 |
actctgactgacgtgtttaatctttttgttgggcagcttattaccgtggagcaatgggtattttgcttgtgtatgatgtc |
29346781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 426 - 472
Target Start/End: Original strand, 52032742 - 52032788
Alignment:
| Q |
426 |
gcagcttattaccgtggagcaatgggtatcttgcttgtgtatgatgt |
472 |
Q |
| |
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||||||||||| |||||||| |||||||||||||| || |||||||| |
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| T |
52032742 |
gcagcttattatcgtggagccatgggtatcttgctggtttatgatgt |
52032788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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