View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6977_low_6 (Length: 252)
Name: NF6977_low_6
Description: NF6977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6977_low_6 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 49188281 - 49188501
Alignment:
| Q |
19 |
ggtccaagccgctttcttcttagccaactcagaattagcttgagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctcactttaatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49188281 |
ggtccaagccgctttcttcttagccaactcagaattagcttgagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctcactttaatt |
49188380 |
T |
|
| Q |
119 |
ccctccttctcaccctctccagctctctgcatcgcaataaccttcgtctctgcatcaatttttgctgcattctgcagcgtttgtccttccctcaattttg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49188381 |
ccctccttctcaccctctccagctctctgcatcgcaataaccttcgtctctgcatcaatttttgctgcattctgcagcgtttgtccttccctcaattttg |
49188480 |
T |
|
| Q |
219 |
aaccaatttcacctttcatct |
239 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
49188481 |
aaccaatttcacctttcatct |
49188501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 49208295 - 49208514
Alignment:
| Q |
20 |
gtccaagccgctttcttcttagccaactcagaattagcttgagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctcactttaattc |
119 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
49208295 |
gtccaagcagctttcttcttagccaactcggaattagcctcagccacttcagcctctctttgattctcaaaaactttcacttcagtcctcactttaattc |
49208394 |
T |
|
| Q |
120 |
cctccttctcaccctctccagctctctgcatcgcaataaccttcgtctctgcatcaatttttgctgcattctgcagcgtttgtccttccctcaattttga |
219 |
Q |
| |
|
||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| | |||||||||||||||||||||||| |
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|
| T |
49208395 |
cctgtttctcaccttctccagccctctgcatcgcaataaccttcgtctctgcatcaattttcgctgcgttctggatcgtttgtccttccctcaattttga |
49208494 |
T |
|
| Q |
220 |
accaatttcacctttcatct |
239 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
49208495 |
accaatttcacctttcatct |
49208514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 49192018 - 49192237
Alignment:
| Q |
20 |
gtccaagccgctttcttcttagccaactcagaattagcttgagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctcactttaattc |
119 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| | |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49192018 |
gtccaagccgctttcttcttagccaattcagaattagcctcagccacttcagcttctctctgattctcaaaaaccttcacttcagtcctcactttaattc |
49192117 |
T |
|
| Q |
120 |
cctccttctcaccctctccagctctctgcatcgcaataaccttcgtctctgcatcaatttttgctgcattctgcagcgtttgtccttccctcaattttga |
219 |
Q |
| |
|
||||||| || ||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||| || || |||||||||||||||||||| || |
|
|
| T |
49192118 |
cctccttgtcgccctctccagccctctgcatcgcaataatctttgtctctgcatcaatttttgctgcattttgtagtgtttgtccttccctcaatttcga |
49192217 |
T |
|
| Q |
220 |
accaatttcacctttcatct |
239 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
49192218 |
accaatctcacctttcatct |
49192237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 49213134 - 49213354
Alignment:
| Q |
19 |
ggtccaagccgctttcttcttagccaactcagaattagcttgagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctcactttaatt |
118 |
Q |
| |
|
||||||||| || ||||| || |||||||| |||||||| | |||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||| |
|
|
| T |
49213134 |
ggtccaagcagccttctttttggccaactccgaattagcctcagccacttcagcctctctctgattctcaaatactttcacttcagttctcactttaatt |
49213233 |
T |
|
| Q |
119 |
ccctccttctcaccctctccagctctctgcatcgcaataaccttcgtctctgcatcaatttttgctgcattctgcagcgtttgtccttccctcaattttg |
218 |
Q |
| |
|
|||| |||||||| ||||| || || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
49213234 |
ccctgcttctcactttctcctgccctttgcatcgctataaccttcgtctctgcatcaatttttgctgcattctgcagcgtttgtcctaccctcaatttcg |
49213333 |
T |
|
| Q |
219 |
aaccaatttcacctttcatct |
239 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
49213334 |
aaccaatttcacctttcatct |
49213354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 49203124 - 49203339
Alignment:
| Q |
20 |
gtccaagccgctttcttcttagccaactcagaattagcttgagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctcactttaattc |
119 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||| | |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49203124 |
gtccaagctgccttcttcttagccaactcagaattagcctcagccacctcagcctctctctgattctcaaaaaccttcacttcagtcctcactttaattc |
49203223 |
T |
|
| Q |
120 |
cctccttctcaccctctccagctctctgcatcgcaataaccttcgtctctgcatcaatttttgctgcattctgcagcgtttgtccttccctcaattttga |
219 |
Q |
| |
|
||||||| ||||||| ||| | ||||||| |||||||| || |||||||||||||| || ||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
49203224 |
cctccttgtcaccctatccggtcctctgcagtgcaataacttttgtctctgcatcaatcttcgctgcattctgcagcgtttttccttgcctcaattt--- |
49203320 |
T |
|
| Q |
220 |
accaatttcacctttcatct |
239 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
49203321 |
-cgaatttcacctttcatct |
49203339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 37030792 - 37031012
Alignment:
| Q |
19 |
ggtccaagccgctttcttcttagccaactcagaattagcttgagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctcactttaatt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37030792 |
ggtccaagccgctttcttcttagccaactcagaattagcttgagccacttcagcctctctttgattctcaaaaactttcacttcagtcctcactttaatt |
37030891 |
T |
|
| Q |
119 |
ccctccttctcaccctctccagctctctgcatcgcaataaccttcgtctctgcatcaatttttgctgcattctgcagcgtttgtccttccctcaattttg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37030892 |
ccctccttctcaccctctccagctctctgcattgcaataaccttcgtctctgcatcaattttcgctgcattctgcagcgtttgtccttccctcaattttg |
37030991 |
T |
|
| Q |
219 |
aaccaatttcacctttcatct |
239 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
37030992 |
aaccaatttcacctttcatct |
37031012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 20 - 239
Target Start/End: Complemental strand, 32592531 - 32592312
Alignment:
| Q |
20 |
gtccaagccgctttcttcttagccaactcagaattagcttgagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctcactttaattc |
119 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| || |
|
|
| T |
32592531 |
gtccaagccgctttcttcttcgccaactcagaattagactcagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctaactctaaatc |
32592432 |
T |
|
| Q |
120 |
cctccttctcaccctctccagctctctgcatcgcaataaccttcgtctctgcatcaatttttgctgcattctgcagcgtttgtccttccctcaattttga |
219 |
Q |
| |
|
||||||| |||| ||||||||| |||||||| ||||||| |||||||| || | ||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
32592431 |
cctccttgtcactctctccagccctctgcatagcaataattttcgtctccgcgttaatttttgctgcattctgcagtgtttgtccttccctagattttga |
32592332 |
T |
|
| Q |
220 |
accaatttcacctttcatct |
239 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
32592331 |
gccaacttcacctttcatct |
32592312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 50 - 239
Target Start/End: Original strand, 31527430 - 31527619
Alignment:
| Q |
50 |
gaattagcttgagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctcactttaattccctccttctcaccctctccagctctctgca |
149 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||| |||| ||||||||| ||||||| |
|
|
| T |
31527430 |
gaattagcctcagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctaactctaaatccctccttgtcactctctccagccctctgca |
31527529 |
T |
|
| Q |
150 |
tcgcaataaccttcgtctctgcatcaatttttgctgcattctgcagcgtttgtccttccctcaattttgaaccaatttcacctttcatct |
239 |
Q |
| |
|
| ||||||| |||||||| || ||||||||||||||||||||||| |||||||||||||| ||||||| |||| |||||||||||||| |
|
|
| T |
31527530 |
tagcaataattttcgtctccgcgtcaatttttgctgcattctgcagtgtttgtccttccctagattttgagccaacttcacctttcatct |
31527619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 51824851 - 51825023
Alignment:
| Q |
68 |
tcagcctctctttgattctcaaaaaccttcacttcagtcctcactttaattccctccttctcaccctctccagctctctgcatcgcaataaccttcgtct |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||| | || ||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
51824851 |
tcagcctctctttgattctcaaaaaccttcacttcagtcctaactctaaatccctccttgttactctctccagccctctgcatcgcaataactttcgtct |
51824950 |
T |
|
| Q |
168 |
ctgcatcaatttttgctgcattctgcagcgtttgtccttccctcaattttgaaccaatttcacctttcatctc |
240 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||||| |||| ||||||| ||||||||||||||| |
|
|
| T |
51824951 |
ctgcgtcaatttttgctgcattctgcagtgtttgtccttccctagatttcgaaccaacttcacctttcatctc |
51825023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 26756661 - 26756880
Alignment:
| Q |
20 |
gtccaagccgctttcttcttagccaactcagaattagcttgagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctcactttaattc |
119 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||| | ||||| ||||||||||| | ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26756661 |
gtccaagccgctttcttcttagtcaactcggaattagcctcggccacctcagcctctctcttattctcaaaaaccttcacttcagtcctaactttaattt |
26756760 |
T |
|
| Q |
120 |
cctccttctcaccctctccagctctctgcatcgcaataaccttcgtctctgcatcaatttttgctgcattctgcagcgtttgtccttccctcaattttga |
219 |
Q |
| |
|
| ||||||||| |||||||||| |||||| ||||||| || |||||||||||||||||||| ||||||||||||||||||||||||| |||| |||| || |
|
|
| T |
26756761 |
cttccttctcagcctctccagccctctgcgtcgcaatgactttcgtctctgcatcaattttcgctgcattctgcagcgtttgtcctttcctcgatttcga |
26756860 |
T |
|
| Q |
220 |
accaatttcacctttcatct |
239 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
26756861 |
tccaacttcacctttcatct |
26756880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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