View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6978_high_14 (Length: 452)
Name: NF6978_high_14
Description: NF6978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6978_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 15 - 446
Target Start/End: Original strand, 50948827 - 50949264
Alignment:
| Q |
15 |
acatcacatactgagtgaggataagaacaaaggacagctaacagagtttgcgactcctccacttttgaaaggccctgccgtatcattaatctacatattt |
114 |
Q |
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| T |
50948827 |
acatcacatactgagtgaggataagaacaaaggacagctaacagagtttgcgactcctccacttttgaaaggccctgccgtatcattaatctacatattt |
50948926 |
T |
|
| Q |
115 |
gcactgttaagtgatagatgctacaaactagccattaacagtgttcagcaataaacaaggagaacaacgcatcaaaagatacatggtatttgtccacnnn |
214 |
Q |
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| T |
50948927 |
gtactgttaagtgatagatgctacaaactagccattaacagtgttcagcaataaacaaggagaacaacgcaccaaaagaaacatggtatttgtccacaaa |
50949026 |
T |
|
| Q |
215 |
nnnnn--ggaacattgaatctttatgccctcatttgaaaacataagtgggtgggtaatatctctaaa-taaaagacaagcaaaaaatagtatttagtatt |
311 |
Q |
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| T |
50949027 |
aaaaaaaggaacattgaatctttatgccctcatttgaaaacataagtgggtgggtaatatctctaaaataaaagacaagcaaaaaatagtatttagtatt |
50949126 |
T |
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| Q |
312 |
acatgtaggaagctaactacatcct---tccacttcaacaaaatgtgaacaaaattctgtcggcaaagcaaattaaaaagggaaaccgataagggtgcga |
408 |
Q |
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| T |
50949127 |
acatgtaggaagctaactacatcctccttccacttcaataaaatgtgaacaaaattctgtcggcaaagcaaattaaaaagggaaaccgataagggtgcaa |
50949226 |
T |
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| Q |
409 |
agtacatcaactcactccagctttatgatgtccatctc |
446 |
Q |
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| T |
50949227 |
agtacatcaactcactccagctttatactgtccatctc |
50949264 |
T |
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