View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6978_high_16 (Length: 402)

Name: NF6978_high_16
Description: NF6978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6978_high_16
NF6978_high_16
[»] chr3 (5 HSPs)
chr3 (53-135)||(7850330-7850412)
chr3 (293-395)||(7850646-7850748)
chr3 (235-289)||(7850529-7850583)
chr3 (299-393)||(8820569-8820663)
chr3 (340-392)||(20000538-20000590)
[»] chr6 (1 HSPs)
chr6 (300-395)||(22748919-22749014)
[»] chr4 (1 HSPs)
chr4 (330-392)||(44078727-44078789)
[»] chr2 (2 HSPs)
chr2 (250-292)||(13968990-13969032)
chr2 (248-292)||(4108903-4108947)
[»] chr1 (1 HSPs)
chr1 (299-386)||(13117242-13117330)


Alignment Details
Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 7850330 - 7850412
Alignment:
Q  53 ttagtaatgttatagtctatttctcgagttgtctgaattgtgtgcatgtaatttattataaatataagatgcaacgtttgaca 135  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7850330 ttagtaatgttatagtctatttctcgagttgtctgaattgtgtgcatgtaatttattataaatataagatgcaacgtttgaca 7850412  T

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Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 293 - 395
Target Start/End: Original strand, 7850646 - 7850748
Alignment:
Q  293 tacacggttcaagataaagaattcgatctccttactactctctcggcgtctccttttataggcaacactttcttgatctaacgggtctttcttttgatgt 392  Q
    ||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  7850646 tacacggttcaagataaagaattcgatctccttactactctttcgttgtctccttttataggcaacactttcttgatctaacgggtctttttttttatgt 7850745  T
Q  393 cca 395  Q
    |||    
T  7850746 cca 7850748  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 289
Target Start/End: Original strand, 7850529 - 7850583
Alignment:
Q  235 tttcaccatgtgtcctgttgacgtatgtaaacccaagttaattacaataagtgag 289  Q
    |||| |||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  7850529 tttcgccatgtgttctgttgacgtatgtaaactcaagttaattacaataagtgag 7850583  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 393
Target Start/End: Original strand, 8820569 - 8820663
Alignment:
Q  299 gttcaagataaagaattcgatctccttactactctctcggcgtctccttttataggcaacactttcttgatctaacgggtctttcttttgatgtc 393  Q
    ||||||||||| ||||| ||| ||| |||| |||||| || |||||||||||||||   ||||||||| | |||| ||| |||||||| ||||||    
T  8820569 gttcaagataatgaatttgatgtccctactgctctctaggtgtctccttttataggtctcactttcttcacctaatgggcctttctttggatgtc 8820663  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 340 - 392
Target Start/End: Complemental strand, 20000590 - 20000538
Alignment:
Q  340 gtctccttttataggcaacactttcttgatctaacgggtctttcttttgatgt 392  Q
    ||||||||||||||||| ||||||||||| |||| ||| |||||||| |||||    
T  20000590 gtctccttttataggcatcactttcttgacctaatgggcctttctttggatgt 20000538  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 300 - 395
Target Start/End: Original strand, 22748919 - 22749014
Alignment:
Q  300 ttcaagataaagaattcgatctccttactactctctcggcgtctccttttataggcaacactttcttgatctaacgggtctttcttttgatgtcca 395  Q
    |||||||||| ||||| ||||   ||||| |||||| || |||||||||||||||  |||||||||||| |||| ||| |||||||| ||| ||||    
T  22748919 ttcaagataatgaatttgatccatttactgctctctaggtgtctccttttataggtcacactttcttgacctaatgggcctttctttggatttcca 22749014  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 392
Target Start/End: Original strand, 44078727 - 44078789
Alignment:
Q  330 ctctctcggcgtctccttttataggcaacactttcttgatctaacgggtctttcttttgatgt 392  Q
    |||||| || ||||||||||||||||  |||||||||||||||| | |||| ||||| |||||    
T  44078727 ctctctaggtgtctccttttataggcttcactttcttgatctaatgagtctctctttggatgt 44078789  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 292
Target Start/End: Complemental strand, 13969032 - 13968990
Alignment:
Q  250 tgttgacgtatgtaaacccaagttaattacaataagtgagctg 292  Q
    |||| |||||||||||| |||||||||||||| ||||||||||    
T  13969032 tgttcacgtatgtaaacacaagttaattacaacaagtgagctg 13968990  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 292
Target Start/End: Original strand, 4108903 - 4108947
Alignment:
Q  248 cctgttgacgtatgtaaacccaagttaattacaataagtgagctg 292  Q
    |||||| |||||||||||| |||||||||||||| | ||||||||    
T  4108903 cctgtttacgtatgtaaacacaagttaattacaacaggtgagctg 4108947  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 386
Target Start/End: Complemental strand, 13117330 - 13117242
Alignment:
Q  299 gttcaagataaagaattcgatctcctt-actactctctcggcgtctccttttataggcaacactttcttgatctaacgggtctttcttt 386  Q
    ||||||||||| |||||||||| |||| | | |||||| |  ||||||||||||||||  ||||||||||| ||||  || ||||||||    
T  13117330 gttcaagataatgaattcgatccccttcattgctctctagatgtctccttttataggcctcactttcttgacctaataggcctttcttt 13117242  T

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