View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6978_high_20 (Length: 356)
Name: NF6978_high_20
Description: NF6978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6978_high_20 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 10 - 356
Target Start/End: Complemental strand, 2899788 - 2899443
Alignment:
| Q |
10 |
ggtgttaacaagaaagaactgttaaaggctaacttctcaagagaatatttgcttatgaaaaggaattcctttgtttacatcttcaagatatgtcaggtaa |
109 |
Q |
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| T |
2899788 |
ggtgttaacaagaaagaactgttaaaggctaacttctcaagagaatatttgcttatgaaaaggaattcctttgtttacatcttcaagatatgtcaggtaa |
2899689 |
T |
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| Q |
110 |
attatagttctggttgctttacatgtataaatattttctcattttcaatactatatttaattgtatgaatattttgcatacatgcttttaacnnnnnnnn |
209 |
Q |
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| T |
2899688 |
attatagttctggttgctttacatgtataaatattttttcattttcaatactatatttaattgtatgaatattttgcatacatgcttttaac-ttttttt |
2899590 |
T |
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| Q |
210 |
nnaatattcttcctatgtttttagcttactctcatggcaacagtgaccatgacactatttttaagaactgagatgcatcgcgattccttgaatgatggag |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2899589 |
ttaatattcttcctatgtttttagcttactctcatggcaacagtgaccatgacactatttttaagaactgagatgcatcgcgattcattgaatgatggag |
2899490 |
T |
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| Q |
310 |
gtgtctatgctggtgctatatttttctcagtggttatgcttatgttt |
356 |
Q |
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| T |
2899489 |
gtgtctatgctggtgctatatttttctcagtggttatgcttatgttt |
2899443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 10 - 112
Target Start/End: Original strand, 2884772 - 2884874
Alignment:
| Q |
10 |
ggtgttaacaagaaagaactgttaaaggctaacttctcaagagaatatttgcttatgaaaaggaattcctttgtttacatcttcaagatatgtcaggtaa |
109 |
Q |
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| T |
2884772 |
ggtgttaacaagaaagaactgttaaaggctaacttctcaagagagtatttgcttatgaaaagaaattcctttgtttacatcttcaagatatgtcaggtaa |
2884871 |
T |
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| Q |
110 |
att |
112 |
Q |
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||| |
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| T |
2884872 |
att |
2884874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 214 - 356
Target Start/End: Original strand, 2884945 - 2885088
Alignment:
| Q |
214 |
tattcttcctatgttttt-agcttactctcatggcaacagtgaccatgacactatttttaagaactgagatgcatcgcgattccttgaatgatggaggtg |
312 |
Q |
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| T |
2884945 |
tattcttcctatgttttttagcttctcctcatggcaacaattgcaatgacactatttttaagaactgagatgcaccgtgattccttgaatggtggaggtg |
2885044 |
T |
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| Q |
313 |
tctatgctggtgctatatttttctcagtggttatgcttatgttt |
356 |
Q |
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| T |
2885045 |
tctattctggtgctttatttttcgcagtagttatgattatgttt |
2885088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 98
Target Start/End: Original strand, 2874903 - 2874992
Alignment:
| Q |
9 |
tggtgttaacaagaaagaactgttaaaggctaacttctcaagagaatatttgcttatgaaaaggaattcctttgtttacatcttcaagat |
98 |
Q |
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| T |
2874903 |
tggtgttaacaagaaggaactattaaaggctaacatctcaagagagtttttgcttatgaaaagaaattcattcatttacctctttaagat |
2874992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 44212976 - 44212911
Alignment:
| Q |
31 |
ttaaaggctaacttctcaagagaatatttgcttatgaaaaggaattcctttgtttacatcttcaag |
96 |
Q |
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| T |
44212976 |
ttaaaggctaacttctcaagagagtatttgctcatgaaaaggaattcgtttgtttacatcttcaag |
44212911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 44225137 - 44225072
Alignment:
| Q |
31 |
ttaaaggctaacttctcaagagaatatttgcttatgaaaaggaattcctttgtttacatcttcaag |
96 |
Q |
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||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||| |
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| T |
44225137 |
ttaaaggctaacttctcaagagagtatttgctcatgaaaaggaattcgtttgtttacatcttcaag |
44225072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 44235951 - 44235886
Alignment:
| Q |
31 |
ttaaaggctaacttctcaagagaatatttgcttatgaaaaggaattcctttgtttacatcttcaag |
96 |
Q |
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||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||| |
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| T |
44235951 |
ttaaaggctaacttctcaagagagtatttgctcatgaaaagaaattcctttgtttacatcttcaag |
44235886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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