View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6978_high_29 (Length: 307)

Name: NF6978_high_29
Description: NF6978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6978_high_29
NF6978_high_29
[»] chr5 (16 HSPs)
chr5 (1-297)||(26072547-26072843)
chr5 (1-286)||(27166152-27166438)
chr5 (6-288)||(18089959-18090243)
chr5 (1-261)||(32228458-32228719)
chr5 (4-180)||(17106569-17106745)
chr5 (1-261)||(33169312-33169573)
chr5 (1-65)||(18148160-18148224)
chr5 (146-262)||(33385598-33385714)
chr5 (1-56)||(24407607-24407662)
chr5 (1-115)||(18359462-18359576)
chr5 (146-263)||(25857647-25857764)
chr5 (1-45)||(27766697-27766741)
chr5 (3-45)||(10774107-10774149)
chr5 (1-42)||(8300627-8300668)
chr5 (146-231)||(27766843-27766928)
chr5 (4-45)||(33385816-33385857)
[»] chr3 (23 HSPs)
chr3 (5-288)||(17098074-17098358)
chr3 (1-222)||(15312236-15312459)
chr3 (1-222)||(16178602-16178824)
chr3 (148-262)||(29523969-29524083)
chr3 (1-194)||(50651640-50651834)
chr3 (1-288)||(963361-963649)
chr3 (1-261)||(3140506-3140767)
chr3 (146-262)||(12342449-12342565)
chr3 (146-262)||(36801299-36801415)
chr3 (1-45)||(11310641-11310685)
chr3 (146-262)||(33496347-33496463)
chr3 (146-288)||(7031215-7031357)
chr3 (1-45)||(11203473-11203517)
chr3 (1-45)||(29524187-29524231)
chr3 (1-45)||(48570481-48570525)
chr3 (3-45)||(30695785-30695827)
chr3 (3-45)||(36801517-36801559)
chr3 (1-42)||(7031462-7031503)
chr3 (1-54)||(12342660-12342713)
chr3 (161-262)||(26771213-26771314)
chr3 (4-45)||(33496204-33496245)
chr3 (4-45)||(53184979-53185020)
chr3 (1-45)||(19890332-19890376)
[»] chr2 (16 HSPs)
chr2 (1-153)||(15391797-15391950)
chr2 (1-288)||(15917307-15917596)
chr2 (1-124)||(42563119-42563243)
chr2 (149-262)||(11000174-11000287)
chr2 (1-45)||(44473012-44473056)
chr2 (175-262)||(42563267-42563354)
chr2 (1-43)||(3400638-3400680)
chr2 (1-45)||(12645190-12645234)
chr2 (3-43)||(13059580-13059620)
chr2 (1-61)||(28252375-28252435)
chr2 (1-45)||(33516226-33516270)
chr2 (1-45)||(40176324-40176368)
chr2 (1-58)||(44023016-44023073)
chr2 (1-37)||(16241529-16241565)
chr2 (1-37)||(17569007-17569043)
chr2 (3-43)||(36930841-36930881)
[»] scaffold0161 (1 HSPs)
scaffold0161 (1-205)||(6290-6495)
[»] chr6 (20 HSPs)
chr6 (3-290)||(18682701-18682990)
chr6 (4-288)||(17330628-17330904)
chr6 (1-82)||(12429037-12429118)
chr6 (146-262)||(21630333-21630449)
chr6 (149-288)||(20883231-20883370)
chr6 (146-262)||(15959037-15959154)
chr6 (146-262)||(17606558-17606674)
chr6 (1-194)||(13937354-13937548)
chr6 (146-288)||(17579279-17579421)
chr6 (146-227)||(215203-215284)
chr6 (1-45)||(10929746-10929790)
chr6 (148-288)||(17573853-17573993)
chr6 (1-45)||(17606776-17606820)
chr6 (1-45)||(20883472-20883516)
chr6 (3-45)||(215059-215101)
chr6 (149-203)||(12427970-12428024)
chr6 (161-242)||(11462228-11462309)
chr6 (1-45)||(11462069-11462113)
chr6 (1-49)||(14373429-14373477)
chr6 (1-61)||(32536549-32536609)
[»] chr4 (17 HSPs)
chr4 (4-288)||(48242036-48242319)
chr4 (1-288)||(19740238-19740526)
chr4 (1-222)||(5790356-5790574)
chr4 (4-288)||(46145332-46145617)
chr4 (146-262)||(4548443-4548559)
chr4 (146-262)||(8360900-8361016)
chr4 (161-290)||(7403728-7403857)
chr4 (1-288)||(20002372-20002660)
chr4 (1-45)||(55726035-55726079)
chr4 (1-45)||(5148315-5148359)
chr4 (1-45)||(12697467-12697511)
chr4 (146-262)||(12697613-12697729)
chr4 (13-115)||(17402058-17402160)
chr4 (1-54)||(11587631-11587684)
chr4 (1-37)||(14137328-14137364)
chr4 (1-45)||(36223531-36223575)
chr4 (1-45)||(54483601-54483645)
[»] chr1 (13 HSPs)
chr1 (4-295)||(2490869-2491161)
chr1 (1-202)||(4646342-4646544)
chr1 (1-115)||(6478173-6478292)
chr1 (1-45)||(28351380-28351424)
chr1 (146-262)||(43388167-43388283)
chr1 (1-45)||(37192369-37192413)
chr1 (1-61)||(47623491-47623551)
chr1 (146-201)||(23635008-23635063)
chr1 (3-46)||(23635163-23635206)
chr1 (1-42)||(16918254-16918295)
chr1 (4-45)||(43388024-43388065)
chr1 (148-288)||(16918007-16918147)
chr1 (3-43)||(30713323-30713363)
[»] chr8 (20 HSPs)
chr8 (1-193)||(12257740-12257937)
chr8 (1-193)||(12265132-12265329)
chr8 (146-262)||(37433932-37434048)
chr8 (1-45)||(2529540-2529584)
chr8 (149-288)||(2170143-2170282)
chr8 (1-58)||(25090041-25090098)
chr8 (149-262)||(34137187-34137300)
chr8 (3-43)||(136574-136614)
chr8 (1-45)||(13199777-13199821)
chr8 (150-262)||(17699286-17699398)
chr8 (3-43)||(18309362-18309402)
chr8 (209-288)||(5181533-5181612)
chr8 (149-288)||(43270253-43270392)
chr8 (146-288)||(20824096-20824238)
chr8 (3-45)||(37433788-37433830)
chr8 (1-42)||(2169994-2170035)
chr8 (1-42)||(20823950-20823991)
chr8 (5-45)||(17699140-17699180)
chr8 (3-43)||(25890718-25890758)
chr8 (1-49)||(34137401-34137449)
[»] chr7 (4 HSPs)
chr7 (1-60)||(48394558-48394617)
chr7 (1-288)||(37254412-37254700)
chr7 (146-293)||(18530310-18530457)
chr7 (1-45)||(25619113-25619157)


Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 26072547 - 26072843
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatcattcga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||  ||||| ||||||||||  || |||||||||||||||||||    
T  26072547 tagctttcaaccaccacaaggaataagattttactttatctaacattttcggtagggaattttgtttgttcctgaatgacttgtcgttccgatcattcga 26072646  T
Q  101 caaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaata 199  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  26072647 caaaatccaaacacacaggagccatataaggtgaaaaaacga-tgccgcgatttcaaaccgcctgcataatgaataaattgcaagaaatggtctgaaata 26072745  T
Q  200 acctgatattcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaaaagaaggataagacagaaacagatgattgatgtccat 297  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26072746 acctgagattcgaccccttcaacaccgagccatgaccacaccaatggccacaacgcaccaaaagaaggacaagacagaaacagatgattgatgtccat 26072843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 27166438 - 27166152
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatcattcga 100  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||| || |||| ||||||||||  |||||| || |||||||  ||  | |||||| |    
T  27166438 tagctttcaaccaccacaaagaatatgattttactttatctaacatatgtggtatagagctttgttggttcctaaataacctgttattttgttcattcca 27166339  T
Q  101 caaaatccaaacacaa-ggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaata 199  Q
    ||| | |||||||||| |||||||||| ||||||||||| ||  | |||||||| | ||| |||||||||| |  ||||||||| || || |||||||||    
T  27166338 caatacccaaacacaaaggagccatatcaggtgaaaaaatgatcgtcgcgattttataccacctgcataattactaaattgcaagaagtgatctgaaata 27166239  T
Q  200 acctgatattcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaaaagaaggataagacagaaacagatga 286  Q
    |||||| | || |||||||||| |||||| |||| || || |||  |||||||||| || ||||  ||| |||||||||||| ||||    
T  27166238 acctgagagtccaccccttcaaaaccaagtcatgcccgcatcaactgccacaacgcgccgaaagttggacaagacagaaacaaatga 27166152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 6 - 288
Target Start/End: Complemental strand, 18090243 - 18089959
Alignment:
Q  6 ttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatcattcgacaaaa 105  Q
    |||||||||||||| ||||| |||||||||||||||||||| ||||||| |||||| || || |||||||| ||| |||||||| |||| ||| ||||||    
T  18090243 ttcaaccaccacaatgaataggattttactttatctaacatatgcggtaaagagctatgagtattcctgaataacttgtcgttctgatctttccacaaaa 18090144  T
Q  106 tccaaacaca-aggagccatataaggtg-aaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacct 203  Q
     ||||||||| |  ||||| ||  | || |||||||||| |||||||||| | | | ||||||||||||| ||||||||| || |||| |||||||||||    
T  18090143 cccaaacacacaaaagccaaatctgatgaaaaaaacgaacgccgcgatttaagatcacctgcataatgaataaattgcaagaagtggtatgaaataacct 18090044  T
Q  204 gatattcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaaaagaaggataagacagaaacagatgatt 288  Q
    ||   ||  |||| |||||||| |||||   ||  ||||| ||||||||||| ||||||   ||  |||||| ||||||||||||    
T  18090043 gactctccgccccctcaacaccgagccaatccctaaccaaaggccacaacgctccaaaaaccgggcaagacaaaaacagatgatt 18089959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 32228458 - 32228719
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatcattcga 100  Q
    |||||||||||||||||||  |||| |||||||||||||||||||| |||||||||||||||||| | || ||||| |   | || ||||| ||| || |    
T  32228458 tagctttcaaccaccacaaaaaatatgattttactttatctaacatatgcggtagagagctttgtttatttctgaaaactttatcattccgctcagtcca 32228557  T
Q  101 caaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaata 199  Q
    ||||||||||||||| |||||||| || || || ||||| ||| | |||| | ||||||  |||||||||| || ||||||||| ||||| ||||  |||    
T  32228558 caaaatccaaacacacaggagccaaattagatggaaaaaggaacgtcgcgctctcaaacaacctgcataattaataaattgcaagaaatgatctgttata 32228657  T
Q  200 acctgatattcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaaa 261  Q
    | ||||   | || |||  ||||||| ||||| |  | |||||| |||||||||||||||||    
T  32228658 aactgagtcttgatcccaacaacacctagccaagctcgcaccaacggccacaacgcaccaaa 32228719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 180
Target Start/End: Complemental strand, 17106745 - 17106569
Alignment:
Q  4 ctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatcattcgacaa 103  Q
    ||||||||||||||||  |||| ||||| ||||||||||||| ||| |||||||| |||||| | || || || |||||||| || |||| |||| | |     
T  17106745 ctttcaaccaccacaacaaataggatttaactttatctaacagttgtggtagagaactttgtttatttctaaataacctgtcattgcgattattccaaat 17106646  T
Q  104 aatccaaacacaaggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattg 180  Q
    |||||||||||||||||| | |||||||||||||| ||   |||||||| |||||| || |||||||||| ||||||    
T  17106645 aatccaaacacaaggagctaaataaggtgaaaaaatgatctccgcgattgcaaaccaccagcataatgaataaattg 17106569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 33169312 - 33169573
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatcattcga 100  Q
    ||||||||| ||||||||||||| | |||||||||||||||||||  ||||||| |||||| | | | || | ||| |  || || ||||| |||||| |    
T  33169312 tagctttcatccaccacaaggaacatgattttactttatctaacaaatgcggtaaagagctatatttatttcggaaaactctatcattccgctcattcca 33169411  T
Q  101 caaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaata 199  Q
    ||| ||||||||||| || ||||| || || || ||||| ||| |||| | | ||| ||| |||||||||| || |||||||| |||||||||||  ||     
T  33169412 caatatccaaacacacagaagccaaattagatggaaaaaggaacgccgtgctctcataccacctgcataattaataaattgcagaaaatggtctgttatg 33169511  T
Q  200 acctgatattcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaaa 261  Q
    | ||||  |||||| ||  ||||||||||||| |  | |||||  |||||||||||| ||||    
T  33169512 aactgagtttcgactccaacaacaccaagccaagctcgcaccatcggccacaacgcatcaaa 33169573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 18148224 - 18148160
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgt 65  Q
    ||||||||||||||||||| || || |||||||||||||||||||| || || | ||||||||||    
T  18148224 tagctttcaaccaccacaaagagtatgattttactttatctaacatatgtggaatagagctttgt 18148160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 146 - 262
Target Start/End: Complemental strand, 33385714 - 33385598
Alignment:
Q  146 cgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatg 245  Q
    ||||||||||| || ||| |||||| || |||||||| |||||| ||||| ||| | ||| | || || | ||| ||||||||||| | ||||||||| |    
T  33385714 cgcgatttcaagccacctacataatcaataaattgcacaaaatgatctgagatagcatgagaatctactcattcgacaccaagccaagcccacaccaaag 33385615  T
Q  246 gccacaacgcaccaaaa 262  Q
    ||||||| |||||||||    
T  33385614 gccacaatgcaccaaaa 33385598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 24407607 - 24407662
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtaga 56  Q
    ||||| ||| |||| ||||||||||||||||||||||||||||||  |||||||||    
T  24407607 tagctctcatccactacaaggaataagattttactttatctaacaaatgcggtaga 24407662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 18359576 - 18359462
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatcattcga 100  Q
    ||||||||||||||||||| | ||  ||||||||||||||||||| | | |||| ||| |||||   |||||  || |||||||| ||||| |||||| |    
T  18359576 tagctttcaaccaccacaaagtatgtgattttactttatctaacaatagtggtatagaactttgacggttccgaaataacctgtcattccgttcattcca 18359477  T
Q  101 caaaatccaaacaca 115  Q
     |||| |||||||||    
T  18359476 taaaacccaaacaca 18359462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 263
Target Start/End: Complemental strand, 25857764 - 25857647
Alignment:
Q  146 cgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatg 245  Q
    ||||||||||| || |||||||| | || |||||||| ||| || ||||| |||   ||| | ||||||||||| ||||||||||| | || |||||  |    
T  25857764 cgcgatttcaagccacctgcatattcaataaattgcacaaagtgatctgagatagtatgagaatcgaccccttcgacaccaagccaagcccgcaccagag 25857665  T
Q  246 gccacaacgcaccaaaag 263  Q
    ||||||| ||||||||||    
T  25857664 gccacaaggcaccaaaag 25857647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 27766697 - 27766741
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaaca 45  Q
    ||||||||||||||||||||| ||  |||||||||||||||||||    
T  27766697 tagctttcaaccaccacaaggtattcgattttactttatctaaca 27766741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 10774107 - 10774149
Alignment:
Q  3 gctttcaaccaccacaaggaataagattttactttatctaaca 45  Q
    ||||||||||||||||||| ||  |||||||||||||||||||    
T  10774107 gctttcaaccaccacaaggtatttgattttactttatctaaca 10774149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 8300668 - 8300627
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatcta 42  Q
    ||||||||||||||||||||| ||  ||||||||||||||||    
T  8300668 tagctttcaaccaccacaaggtatttgattttactttatcta 8300627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 231
Target Start/End: Original strand, 27766843 - 27766928
Alignment:
Q  146 cgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagcca 231  Q
    |||||||||||| | |||||||| | || |||||||| | |||| |||||||||   ||| | ||||||||||| |||||||||||    
T  27766843 cgcgatttcaaaacacctgcatattcaataaattgcacacaatgatctgaaatagtatgagaatcgaccccttcgacaccaagcca 27766928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 33385857 - 33385816
Alignment:
Q  4 ctttcaaccaccacaaggaataagattttactttatctaaca 45  Q
    |||||||||||||||||| ||  |||||||||||||||||||    
T  33385857 ctttcaaccaccacaaggtatttgattttactttatctaaca 33385816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 5 - 288
Target Start/End: Complemental strand, 17098358 - 17098074
Alignment:
Q  5 tttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatcattcgacaaa 104  Q
    ||||||||||||||||||||| |||||||||| ||||||||| ||||||||||| |||||| | |||||||| |||||||| |||||||||||| |||||    
T  17098358 tttcaaccaccacaaggaatatgattttacttcatctaacatatgcggtagagatctttgtttattcctgaataacctgtcattccgatcattccacaaa 17098259  T
Q  105 atccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacct 203  Q
    | ||||||||| ||| |||||||||||| |||||||||   | | ||||||||||| ||||| ||||||| ||||||||| ||||||||||||||||| |    
T  17098258 acccaaacacataggggccatataaggtcaaaaaacgatatctgtgatttcaaaccacctgcgtaatgaataaattgcaagaaatggtctgaaataactt 17098159  T
Q  204 gatattcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaaaagaaggataagacagaaacagatgatt 288  Q
    || ||||||||||||||||||| ||||||  |  |||||| | |||||||||||||||||| ||| |||| ||||||||||||||    
T  17098158 gagattcgaccccttcaacaccgagccatatctgcaccaacgaccacaacgcaccaaaagatggacaagatagaaacagatgatt 17098074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 15312236 - 15312459
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatcattcga 100  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||| |  ||||| ||||||||  | ||||| || ||| || | |||||||||||| |    
T  15312236 tagctttcaaccaccacaaggaatatgattttagtttatctaacatatatggtagtgagctttgcttattcctaaataacttg-cattccgatcattcca 15312334  T
Q  101 caaaatccaaacaca-aggagccatataaggtgaaaaaacgaatg----ccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctga 195  Q
    ||||| ||||||||| ||||||| |||||||||||||||  ||||    ||||||||||||||| | ||||||||||| ||||||| | |||||||||||    
T  15312335 caaaacccaaacacataggagccttataaggtgaaaaaa--aatgatctccgcgatttcaaaccacatgcataatgaataaattgcgagaaatggtctga 15312432  T
Q  196 aataacctgatattcgaccccttcaac 222  Q
    |||||||||| ||||||||||||||||    
T  15312433 aataacctgagattcgaccccttcaac 15312459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 16178602 - 16178824
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatcattcga 100  Q
    ||||||||||||||||||| |||||  |||| ||||||| ||||||| | ||| ||||||||||| ||||||| || |||||||| |||||||||||| |    
T  16178602 tagctttcaaccaccacaatgaatagaatttaactttatataacattagtggttgagagctttgtttgttcctaaataacctgtcattccgatcattcca 16178701  T
Q  101 caaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaata 199  Q
     | |||||||||||| |||||||| |||| ||||||||| ||   || |||||||||||| || | |||||| | ||||||| | ||||||||||| |||    
T  16178702 aataatccaaacacataggagccaaataaagtgaaaaaatgatatccacgatttcaaaccaccagtataatggataaattgcgagaaatggtctgagata 16178801  T
Q  200 acctgatattcgaccccttcaac 222  Q
    || ||| |||| |||||||||||    
T  16178802 acttgagattcaaccccttcaac 16178824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 148 - 262
Target Start/End: Complemental strand, 29524083 - 29523969
Alignment:
Q  148 cgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatggc 247  Q
    |||||||||||| |||||||| | || |||||||| |||||| ||||| |||   ||| | ||||||||||| ||||||||||| | ||||||||| |||    
T  29524083 cgatttcaaaccacctgcatattcaataaattgcacaaaatgatctgagatattatgagaatcgaccccttcgacaccaagccaagcccacaccaaaggc 29523984  T
Q  248 cacaacgcaccaaaa 262  Q
    ||||| |||||||||    
T  29523983 cacaatgcaccaaaa 29523969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 50651834 - 50651640
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatcattcga 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||  || |||| ||| || ||  | || ||||| |  || || ||||| |||||| |    
T  50651834 tagctttcaaccaccacaaggaataagattttactttacctaacaaatgtggtaaagaactatgattattactgaaaacgctatcattccgctcattcca 50651735  T
Q  101 caaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctg 194  Q
    ||| ||||||||||| || ||||| || || |||||||| ||  | || | | ||||||| |||||||||| || ||| |||||| |||||||||    
T  50651734 caatatccaaacacacagcagccaaattagatgaaaaaaagaccgtcgtgctctcaaaccacctgcataattaataaactgcaaacaatggtctg 50651640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 963649 - 963361
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatcattcga 100  Q
    ||||||||| ||||||||||||| | |||||||||||||||||||  ||||||| |||||| | | | ||   ||| |  || || ||||| |||||| |    
T  963649 tagctttcatccaccacaaggaacatgattttactttatctaacaaatgcggtaaagagctatatttattttggaaaactctatcattccgctcattcca 963550  T
Q  101 caaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaata 199  Q
    ||| ||||||||||| || ||||| || || || ||||| ||| |||| | | ||| ||| ||| |||||| || ||||||||||||||||||||  ||     
T  963549 caatatccaaacacacagaagccaaattagatggaaaaaggaacgccgtgctctcataccacctacataattaataaattgcaaaaaatggtctgttatg 963450  T
Q  200 acctgatattcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaaaagaaggataagacagaaacagatgatt 288  Q
    | ||||  |||||| ||  ||| ||||||||| |  | |||||  |||||||||||| ||||  | ||| |||||| ||| ||||||||    
T  963449 aactgagtttcgactccaacaagaccaagccaagctcgcaccatcggccacaacgcatcaaagtacggacaagacaaaaatagatgatt 963361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 3140506 - 3140767
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatcattcga 100  Q
    |||||||||  ||| ||||| || | |||||||||||||||||||  ||||||| |||||||| | | || | ||| |  || || ||||| |||||| |    
T  3140506 tagctttcagtcacgacaagaaacatgattttactttatctaacaaatgcggtaaagagctttatttatttcggaaaactctatcattccgctcattcca 3140605  T
Q  101 caaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaata 199  Q
    ||| ||||||||||| || ||||| || || || ||||| ||| |  | | | ||||| | |||||||||| || |||||||||||||||||||   ||     
T  3140606 caatatccaaacacacagaagccaaattagttggaaaaaagaacgttgtgctctcaaatcacctgcataattaataaattgcaaaaaatggtcttttatg 3140705  T
Q  200 acctgatattcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaaa 261  Q
    | ||||  |||||||||  ||||||||||||| |  | |||||  |||||||||||||||||    
T  3140706 aactgagtttcgaccccaacaacaccaagccaagctcgcaccatcggccacaacgcaccaaa 3140767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 146 - 262
Target Start/End: Complemental strand, 12342565 - 12342449
Alignment:
Q  146 cgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatg 245  Q
    |||||||||||||| |||||||| | || |||||||| |||||| ||||| |||   ||| | |||||| |||| ||||||||||| | || |||||| |    
T  12342565 cgcgatttcaaaccacctgcatattcaataaattgcacaaaatgatctgagatagtatgagaatcgacctcttcgacaccaagccaagcccgcaccaaag 12342466  T
Q  246 gccacaacgcaccaaaa 262  Q
    ||||||| |||||||||    
T  12342465 gccacaatgcaccaaaa 12342449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 146 - 262
Target Start/End: Complemental strand, 36801415 - 36801299
Alignment:
Q  146 cgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatg 245  Q
    ||||||||||| || |||||||| | || |||||||| |||||| ||||| ||| | ||| | || |||||||| ||||||||||| | || |||||| |    
T  36801415 cgcgatttcaagccacctgcatattcaataaattgcacaaaatgatctgagatagcatgagaatctaccccttcgacaccaagccaagcccgcaccaaag 36801316  T
Q  246 gccacaacgcaccaaaa 262  Q
    ||||||| |||||||||    
T  36801315 gccacaatgcaccaaaa 36801299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 11310685 - 11310641
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaaca 45  Q
    ||||||||||||||||||||| || ||||||||||||||||||||    
T  11310685 tagctttcaaccaccacaaggtatgagattttactttatctaaca 11310641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 146 - 262
Target Start/End: Original strand, 33496347 - 33496463
Alignment:
Q  146 cgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatg 245  Q
    |||||||||||| | |||||||| | || |||||||| ||||||  |||| ||| | ||| | || |||||||| ||||||||||| | || |||||| |    
T  33496347 cgcgatttcaaatcacctgcatattcaataaattgcacaaaatgagctgagatagcatgagaatctaccccttcgacaccaagccaagcccgcaccaaag 33496446  T
Q  246 gccacaacgcaccaaaa 262  Q
    ||||||| |||||||||    
T  33496447 gccacaatgcaccaaaa 33496463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 288
Target Start/End: Complemental strand, 7031357 - 7031215
Alignment:
Q  146 cgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatg 245  Q
    ||||||||||| || |||||||| | || |||||||| ||| || ||||| |||   ||| | ||||||||||| ||||||||||| | || |||||  |    
T  7031357 cgcgatttcaagccacctgcatattcaataaattgcacaaagtgatctgacatagtatgagaatcgaccccttcgacaccaagccaagcccgcaccagag 7031258  T
Q  246 gccacaacgcaccaaaagaaggataagacagaaacagatgatt 288  Q
    ||||||| ||||||||||  ||| |||||| ||| | ||||||    
T  7031257 gccacaaagcaccaaaagtcggacaagacaaaaataaatgatt 7031215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 11203473 - 11203517
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaaca 45  Q
    ||||||||||||||||||||| ||  |||||||||||||||||||    
T  11203473 tagctttcaaccaccacaaggtatttgattttactttatctaaca 11203517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 29524231 - 29524187
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaaca 45  Q
    ||||||||||||||||||||| ||  |||||||||||||||||||    
T  29524231 tagctttcaaccaccacaaggtatttgattttactttatctaaca 29524187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 48570525 - 48570481
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaaca 45  Q
    |||||||||||||||||| |||||  |||||||||||||||||||    
T  48570525 tagctttcaaccaccacagggaatttgattttactttatctaaca 48570481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 30695827 - 30695785
Alignment:
Q  3 gctttcaaccaccacaaggaataagattttactttatctaaca 45  Q
    ||||||||||||||||||| ||  |||||||||||||||||||    
T  30695827 gctttcaaccaccacaaggtatttgattttactttatctaaca 30695785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 36801559 - 36801517
Alignment:
Q  3 gctttcaaccaccacaaggaataagattttactttatctaaca 45  Q
    ||||||||||||||||||| ||  |||||||||||||||||||    
T  36801559 gctttcaaccaccacaaggtatttgattttactttatctaaca 36801517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 7031503 - 7031462
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatcta 42  Q
    ||||||||||||||||||||| ||  ||||||||||||||||    
T  7031503 tagctttcaaccaccacaaggtatttgattttactttatcta 7031462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 12342713 - 12342660
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaacatttgcggta 54  Q
    |||||||||||||| |||||| ||  ||||||||||||||||||| | ||||||    
T  12342713 tagctttcaaccactacaaggtatttgattttactttatctaacaatagcggta 12342660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 262
Target Start/End: Complemental strand, 26771314 - 26771213
Alignment:
Q  161 cctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaa 260  Q
    ||||| ||||||| |||||||||||||| ||| ||||||  ||||   || ||||||||||| |||| ||| | || |||||||||||| || |||| ||    
T  26771314 cctgcgtaatgaataaattgcaaaaaattgtccgaaatatgctgaggatcaaccccttcaaccccaaaccaagccctcaccaatggccataaggcactaa 26771215  T
Q  261 aa 262  Q
    ||    
T  26771214 aa 26771213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 33496204 - 33496245
Alignment:
Q  4 ctttcaaccaccacaaggaataagattttactttatctaaca 45  Q
    |||||||||||||||||| ||  |||||||||||||||||||    
T  33496204 ctttcaaccaccacaaggtatttgattttactttatctaaca 33496245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 53185020 - 53184979
Alignment:
Q  4 ctttcaaccaccacaaggaataagattttactttatctaaca 45  Q
    |||||||||||||||||| ||  |||||||||||||||||||    
T  53185020 ctttcaaccaccacaaggtatgtgattttactttatctaaca 53184979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 19890332 - 19890376
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaaca 45  Q
    |||||||||||||||||||||  |  |||||||||||||||||||    
T  19890332 tagctttcaaccaccacaaggtgtgtgattttactttatctaaca 19890376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 8e-58; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 15391797 - 15391950
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatcattcga 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||| |    
T  15391797 tagctttcaaccaccacaaggaataagatttaactttatctaacaattgcggtagagagctttgtttgttcctaaacaacctgtcgttccgatcattcca 15391896  T
Q  101 caaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgattt 153  Q
    ||||| ||||||||| ||||||||||||||||||||||||||| ||| ||||||    
T  15391897 caaaacccaaacacacaggagccatataaggtgaaaaaacgaacgccccgattt 15391950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 15917307 - 15917596
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatcattcga 100  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||| || |||| |||||||||| | ||||| || |  ||||| ||||| |||||| |    
T  15917307 tagctttcaaccaccacaaagaatatgattttactttatctaacatatgtggtatagagctttgtctattcctaaatagtctgtcattccgttcattcca 15917406  T
Q  101 caaaatccaaacacaagga-gccatataaggtgaaaaaacgaatgccgcgattt-caaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaat 198  Q
    ||||| |||||||||  || | || |  | ||| ||||| ||  | |||||||| | | || ||||||||||||| ||||||||||||||||||||||||    
T  15917407 caaaacccaaacacattgaagtcaaaccaagtggaaaaaagatcgtcgcgattttcgagccacctgcataatgaataaattgcaaaaaatggtctgaaat 15917506  T
Q  199 aacctgatattcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaaaagaaggataagacagaaacagatgatt 288  Q
    | ||||| |  |||||||| ||||||  ||||||| |  |||||||||||||||||| |||||||  ||| |||||| ||||| ||||||    
T  15917507 agcctgagaaccgacccctacaacactgagccatgcctgcaccaatggccacaacgcgccaaaagttggacaagacaaaaacatatgatt 15917596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 42563119 - 42563243
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatcattcga 100  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||| ||| | |||||| ||||| | |||||||| |  || || ||||  |||||| |    
T  42563119 tagctttcaaccaccacaaggaatatgattttactttatttaacatatgcagaagagagttttgtttattcctgaaaactctatcattcctctcattcca 42563218  T
Q  101 caaaatccaaacaca-aggagccat 124  Q
    ||||| ||||| ||| |||||||||    
T  42563219 caaaacccaaatacagaggagccat 42563243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 262
Target Start/End: Complemental strand, 11000287 - 11000174
Alignment:
Q  149 gatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatggcc 248  Q
    |||||||| || |||||||| | || |||||||| |||||| ||||| ||| | ||| | || |||||||| ||||||||||||| || |||||  ||||    
T  11000287 gatttcaagccacctgcatattcaataaattgcacaaaatgatctgagatagcatgagaatctaccccttcgacaccaagccatgcccgcaccataggcc 11000188  T
Q  249 acaacgcaccaaaa 262  Q
    |||| |||||||||    
T  11000187 acaatgcaccaaaa 11000174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 44473012 - 44473056
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaaca 45  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||    
T  44473012 tagctttcaaccaccacaaagaatatgattttactttatctaaca 44473056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 262
Target Start/End: Original strand, 42563267 - 42563354
Alignment:
Q  175 aaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaaaa 262  Q
    ||||||||| ||||||||||||||||||||| | ||||||| | | ||||| ||||| | ||  ||||| | ||||||||||||||||    
T  42563267 aaattgcaagaaatggtctgaaataacctgagaatcgacccatactacaccgagccaagcccggaccaacgaccacaacgcaccaaaa 42563354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 3400638 - 3400680
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaa 43  Q
    ||||||||||||||||||||| ||| |||||||||||||||||    
T  3400638 tagctttcaaccaccacaaggtatatgattttactttatctaa 3400680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 12645190 - 12645234
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaaca 45  Q
    ||||||| ||||||||||||| || ||||||||||||||||||||    
T  12645190 tagcttttaaccaccacaaggtatgagattttactttatctaaca 12645234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 13059580 - 13059620
Alignment:
Q  3 gctttcaaccaccacaaggaataagattttactttatctaa 43  Q
    |||||||||||||||||||||||| | ||||||||||||||    
T  13059580 gctttcaaccaccacaaggaataaaactttactttatctaa 13059620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 28252375 - 28252435
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagct 61  Q
    ||||||| ||||||||||| ||| | ||||||||||| ||||||||||| |||| ||||||    
T  28252375 tagcttttaaccaccacaaagaagatgattttactttgtctaacatttgtggtaaagagct 28252435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 33516270 - 33516226
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaaca 45  Q
    |||||||||||||||||| |||||  |||||||||||||||||||    
T  33516270 tagctttcaaccaccacatggaatttgattttactttatctaaca 33516226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 40176324 - 40176368
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaaca 45  Q
    |||||||||||||||||| |||||  |||||||||||||||||||    
T  40176324 tagctttcaaccaccacatggaatttgattttactttatctaaca 40176368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 44023016 - 44023073
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagaga 58  Q
    |||||||||||||||||| || ||  |||||||||||||||||||  || ||||||||    
T  44023016 tagctttcaaccaccacagggtatttgattttactttatctaacaactgtggtagaga 44023073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 16241529 - 16241565
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttacttt 37  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  16241529 tagctttcagccaccacaaggaataagactttacttt 16241565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 17569043 - 17569007
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttacttt 37  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  17569043 tagctttcaaccaccacaaagaataatattttacttt 17569007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 36930841 - 36930881
Alignment:
Q  3 gctttcaaccaccacaaggaataagattttactttatctaa 43  Q
    ||||||||||||||||| |||||  ||||||||||||||||    
T  36930841 gctttcaaccaccacaatgaatagtattttactttatctaa 36930881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 6495 - 6290
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatcattcga 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||| ||  | |||||||| ||||||||||||||||  ||| |    
T  6495 tagctttcaaccaccacaatgaataagattttactttatctaacatatgcggtaaagagctatggttattcctgaataacctgtcgttccgatatttcca 6396  T
Q  101 caaaatccaaacac-aaggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaata 199  Q
    ||||| |||||||| ||||| ||| || | |||||| |||||| |||||||||||| | | ||||||||||||| ||||||||| || |||| |||||||    
T  6395 caaaacccaaacacaaaggacccaaatcaagtgaaagaacgaacgccgcgatttcagatcacctgcataatgaataaattgcaagaagtggtttgaaata 6296  T
Q  200 acctga 205  Q
    | ||||    
T  6295 atctga 6290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 4e-41; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 3 - 290
Target Start/End: Complemental strand, 18682990 - 18682701
Alignment:
Q  3 gctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaac-ctgtcgttccgatcattcgac 101  Q
    ||||||| ||| ||||||||| | |||||||||||||||||||| |||||||| ||||||||| |||||||||| | | || |  || || |||||| ||    
T  18682990 gctttcagccagcacaaggaaaatgattttactttatctaacatatgcggtagcgagctttgtttgttcctgaaaagctctatgatttcgctcattccac 18682891  T
Q  102 aaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataa 200  Q
    || | | ||| ||| | ||||||||||||||||||||||||    |||||| ||||||| |||||||||| ||  |||||||| ||||||||||||||||    
T  18682890 aacacctaaatacataagagccatataaggtgaaaaaacgagcatcgcgatctcaaaccacctgcataattaatgaattgcaagaaatggtctgaaataa 18682791  T
Q  201 cctgatattcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaaaagaaggataagacagaaacagatgattga 290  Q
    ||||| ||||||||||  | |  |||||||| |||   ||||| ||||||| |||||||||| | ||| |||||| |||||||| |||||    
T  18682790 cctgagattcgaccccaactatgccaagccaagactgaaccaacggccacagcgcaccaaaatacggacaagacaaaaacagataattga 18682701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 4 - 288
Target Start/End: Original strand, 17330628 - 17330904
Alignment:
Q  4 ctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatcattcgacaa 103  Q
    |||||||||||||||| ||||| |||||||||||||||||||| |||| ||||||||| ||| | ||||||         || |||||||| ||| ||||    
T  17330628 ctttcaaccaccacaaagaatatgattttactttatctaacatatgcgatagagagctatgtttattcctg---------tcattccgatccttccacaa 17330718  T
Q  104 aatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacc 202  Q
    || ||||||||| |||||| | ||||| |||||||||||| |||| ||  ||| | | ||| ||||||||| ||||||||||||||||||||||||||||    
T  17330719 aacccaaacacacaggagctaaataagatgaaaaaacgaacgccgagaggtcagaacacctacataatgaataaattgcaaaaaatggtctgaaataacc 17330818  T
Q  203 tgatattcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaaaagaaggataagacagaaacagatgatt 288  Q
    |||   |||    || ||||||| ||||||| || || ||| ||||||| |||||||||| |  || |||||| ||||| ||||||    
T  17330819 tgactctcggtgtctgcaacaccgagccatgcccgcatcaaaggccacagcgcaccaaaatactgacaagacaaaaacaaatgatt 17330904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 12429118 - 12429037
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacct 82  Q
    ||||||||||| ||||||| ||||| |||||||||||||||||||| || |||| ||||||||||  |||||| || |||||    
T  12429118 tagctttcaactaccacaaagaatatgattttactttatctaacatatgtggtatagagctttgttggttcctaaataacct 12429037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 146 - 262
Target Start/End: Complemental strand, 21630449 - 21630333
Alignment:
Q  146 cgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatg 245  Q
    |||||||||||| | |||||||| | || |||||||| | |||| |||||||||   ||| | ||||||||||| ||||||||||| | || |||||| |    
T  21630449 cgcgatttcaaaacacctgcatattcaataaattgcacacaatgatctgaaatagtatgagaatcgaccccttcgacaccaagccaagcccgcaccaaag 21630350  T
Q  246 gccacaacgcaccaaaa 262  Q
    ||||||| |||||||||    
T  21630349 gccacaaagcaccaaaa 21630333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 288
Target Start/End: Complemental strand, 20883370 - 20883231
Alignment:
Q  149 gatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatggcc 248  Q
    |||||||| || |||||||| | || |||||||| |||||||||||| ||| | ||| | || |||||||| ||||||||||||| || |||||  ||||    
T  20883370 gatttcaagccacctgcatattcaataaattgcacaaaatggtctgagatagcatgagaatctaccccttcgacaccaagccatgtccgcaccataggcc 20883271  T
Q  249 acaacgcaccaaaagaaggataagacagaaacagatgatt 288  Q
    |||| ||||| |||   ||| |||||| ||||| ||||||    
T  20883270 acaatgcaccgaaaattggacaagacaaaaacatatgatt 20883231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 262
Target Start/End: Complemental strand, 15959154 - 15959037
Alignment:
Q  146 cgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgac-cacaccaat 244  Q
    ||||||||||| |  ||||| ||||||||||||||| |||||||||||||||||  ||||   |  ||||||||||| |||||||| | | | |||||||    
T  15959154 cgcgatttcaagcaacctgcgtaatgaacaaattgcgaaaaatggtctgaaatatgctgaggatgaaccccttcaaccccaagccaagcctctcaccaat 15959055  T
Q  245 ggccacaacgcaccaaaa 262  Q
    ||||| || |||||||||    
T  15959054 ggccataaggcaccaaaa 15959037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 146 - 262
Target Start/End: Complemental strand, 17606674 - 17606558
Alignment:
Q  146 cgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatg 245  Q
    |||||||||||||| |||||||| | || |||||||| ||| || ||||| |||   ||| | ||||||||||| ||||||||||| | || |||||| |    
T  17606674 cgcgatttcaaaccacctgcatattcaataaattgcacaaagtgatctgagatagtatgagaatcgaccccttcgacaccaagccaagcccgcaccaaag 17606575  T
Q  246 gccacaacgcaccaaaa 262  Q
     |||||| |||||||||    
T  17606574 accacaatgcaccaaaa 17606558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 13937354 - 13937548
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatcattcga 100  Q
    ||||||||| ||||||||||||| | |||||||||||||||||||  ||| ||| |||||| | | | ||   ||| |  || || ||||| |||||| |    
T  13937354 tagctttcatccaccacaaggaacatgattttactttatctaacaaatgcagtaaagagctatatttattttggaaaactctatcattccgctcattcca 13937453  T
Q  101 caaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctg 194  Q
    ||| ||||||||||| |  ||||| || || || ||||| ||| | || | | ||| ||| |||||||||| || ||||||||||||||||||||    
T  13937454 caatatccaaacacacaaaagccaaattagatggaaaaaagaacgtcgtgctctcataccacctgcataattaataaattgcaaaaaatggtctg 13937548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 288
Target Start/End: Complemental strand, 17579421 - 17579279
Alignment:
Q  146 cgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatg 245  Q
    ||||||||||| || |||||||| | || |||||||| ||| || ||||| |||   ||| | ||||||||||| ||||||||||| | || |||||  |    
T  17579421 cgcgatttcaagccacctgcatattcaataaattgcacaaagtgatctgagatagtatgagaatcgaccccttcgacaccaagccaagcccgcaccagag 17579322  T
Q  246 gccacaacgcaccaaaagaaggataagacagaaacagatgatt 288  Q
    ||||||| ||||||||||  ||| |||||| ||| | ||||||    
T  17579321 gccacaaggcaccaaaagtcggacaagacaaaaataaatgatt 17579279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 215203 - 215284
Alignment:
Q  146 cgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaa 227  Q
    |||||||||||||| |||||||| | || |||||||| |||||| ||||| ||| | ||| | || ||||||||||||||||    
T  215203 cgcgatttcaaaccacctgcatattcaataaattgcacaaaatgatctgagatagcatgaaaatctaccccttcaacaccaa 215284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 10929790 - 10929746
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaaca 45  Q
    ||||||||||||||||||||| ||  |||||||||||||||||||    
T  10929790 tagctttcaaccaccacaaggtatttgattttactttatctaaca 10929746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 288
Target Start/End: Complemental strand, 17573993 - 17573853
Alignment:
Q  148 cgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatggc 247  Q
    ||||||||| || |||||||| | || |||||||| ||| || ||||| |||   ||| | ||||||||||| ||||||||||| | || |||||  |||    
T  17573993 cgatttcaagccacctgcatattcaataaattgcacaaagtgatctgagatagtatgagaatcgaccccttcgacaccaagccaagcccgcaccagaggc 17573894  T
Q  248 cacaacgcaccaaaagaaggataagacagaaacagatgatt 288  Q
    ||||| ||||||||||  ||| |||||| ||| | ||||||    
T  17573893 cacaaggcaccaaaagtcggacaagacaaaaataaatgatt 17573853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 17606820 - 17606776
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaaca 45  Q
    ||||||||||||||||||||| ||  |||||||||||||||||||    
T  17606820 tagctttcaaccaccacaaggtatttgattttactttatctaaca 17606776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 20883516 - 20883472
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaaca 45  Q
    ||||||||||||||||||||| ||  |||||||||||||||||||    
T  20883516 tagctttcaaccaccacaaggtatgtgattttactttatctaaca 20883472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 215059 - 215101
Alignment:
Q  3 gctttcaaccaccacaaggaataagattttactttatctaaca 45  Q
    ||||||||||||||||||| ||  |||||||||||||||||||    
T  215059 gctttcaaccaccacaaggtatttgattttactttatctaaca 215101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 12428024 - 12427970
Alignment:
Q  149 gatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacct 203  Q
    ||||||||||| |||||||||| || ||||||||| || || |||||||||||||    
T  12428024 gatttcaaaccacctgcataattaataaattgcaagaagtgatctgaaataacct 12427970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 242
Target Start/End: Original strand, 11462228 - 11462309
Alignment:
Q  161 cctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacacca 242  Q
    |||||||| | || |||||||| |||||| ||||| ||||| ||| | || |||||||| ||||||||||||| || |||||    
T  11462228 cctgcatattcaataaattgcacaaaatgatctgagataacatgagaatctaccccttcgacaccaagccatgcccgcacca 11462309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 11462069 - 11462113
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaaca 45  Q
    ||||||||||||||||||||| ||  |||||||||||||| ||||    
T  11462069 tagctttcaaccaccacaaggtatgtgattttactttatccaaca 11462113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 14373477 - 14373429
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaacatttg 49  Q
    ||||||| ||||||||||| ||| | ||||||||||| |||||||||||    
T  14373477 tagcttttaaccaccacaaagaagatgattttactttgtctaacatttg 14373429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 32536549 - 32536609
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagct 61  Q
    ||||||| |||||||| || ||| | ||||||||||| ||||||||||| |||| ||||||    
T  32536549 tagcttttaaccaccaaaaagaagatgattttactttgtctaacatttgtggtaaagagct 32536609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 4 - 288
Target Start/End: Original strand, 48242036 - 48242319
Alignment:
Q  4 ctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatcattcgacaa 103  Q
    |||||||||| ||||||||||| |||||||||||||||||||| || ||| ||||||||||| ||||| | || ||| |||| |||||||||||| | |     
T  48242036 ctttcaaccaacacaaggaatatgattttactttatctaacatatgtggt-gagagctttgtttgttcttaaataacatgtcattccgatcattccatat 48242134  T
Q  104 aatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacc 202  Q
    |||||||||||| ||||||||||||||||| ||||| ||     ||| ||| ||||| || |||||||| | ||||||| | |||| |||||||||||||    
T  48242135 aatccaaacacataggagccatataaggtg-aaaaatgatatatgcggttttaaaccaccagcataatggataaattgcgagaaattgtctgaaataacc 48242233  T
Q  203 tgatattcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaaaagaaggataagacagaaacagatgatt 288  Q
    ||| |||| ||||||||||| |  ||||| | || ||| || | ||| | ||||||| |||| ||| ||| |||||||||||||||    
T  48242234 tgagattcaaccccttcaactctgagccacgcccgcactaacgaccaaagcgcaccataagatggacaagtcagaaacagatgatt 48242319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 19740526 - 19740238
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatcattcga 100  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||| |||| ||||||||||||| | || ||||| |  || || ||||| |||||| |    
T  19740526 tagctttcagccaccacaaggaatatgattttactttatctaacatatgcgatagagagctttgtttatttctgaaaactctatcattccgctcattcca 19740427  T
Q  101 caaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaata 199  Q
    ||||||||||||||| | |||||| || || |  ||||| |||||  ||| | ||||||| ||| |||||| || |||||| || ||||||||||  |||    
T  19740426 caaaatccaaacacacaagagccaaattagatagaaaaaggaatgatgcgctctcaaaccacctacataattaataaattgtaagaaatggtctgctata 19740327  T
Q  200 acctgatattcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaaaagaaggataagacagaaacagatgatt 288  Q
    | ||||  |||||||||  | ||||||||||| |  | |||||  | |||||||||||||||  ||||| |||||| ||| ||||||||    
T  19740326 aactgagtttcgaccccaaccacaccaagccaagctcgcaccatcgaccacaacgcaccaaagtaaggacaagacaaaaatagatgatt 19740238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 5790574 - 5790356
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatcattcga 100  Q
    ||||||||||||||||||| ||||| ||||| |||| |||||||| ||| |||||||| |||||| |||||||    ||| |||| |||||||||||| |    
T  5790574 tagctttcaaccaccacaacgaataggatttaacttgatctaacagttgtggtagagaactttgtttgttcct----aacatgtcattccgatcattcca 5790479  T
Q  101 caaaatccaaacac-aaggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaata 199  Q
     | |||| |||||| |||||| || |||||||||||||| ||   |||||||| |||||| || |||||||| | ||||||| | ||||||||||| |||    
T  5790478 aataatcaaaacacaaaggagtcaaataaggtgaaaaaatgatctccgcgattgcaaaccaccagcataatggataaattgcgagaaatggtctgagata 5790379  T
Q  200 acctgatattcgaccccttcaac 222  Q
    |||||| ||||  ||||||||||    
T  5790378 acctgagattcagccccttcaac 5790356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 288
Target Start/End: Original strand, 46145332 - 46145617
Alignment:
Q  4 ctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatcattcgacaa 103  Q
    |||||| ||| || |||||| | |||||||||||||||||||  ||||||| |||||| ||| | || | ||| |  || || ||||| |||||| ||||    
T  46145332 ctttcatccatcataaggaacatgattttactttatctaacaaatgcggtaaagagctgtgtttatttcagaaaactctatcattccgctcattccacaa 46145431  T
Q  104 aatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacc 202  Q
     ||||||||||| |  ||||| || || || ||||| ||| |||| | | ||| ||| |||||||||| || ||||||||||||||||||||  || | |    
T  46145432 tatccaaacacacataagccaaattagatggaaaaaagaacgccgtgctctcataccacctgcataattaataaattgcaaaaaatggtctgttatgaac 46145531  T
Q  203 tgatattcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaaaagaaggataagacagaaacagatgatt 288  Q
    |||  |||||||||  ||||||||||||| |  | |||||  ||||||||| || ||||  | ||| |||||| ||| ||||||||    
T  46145532 tgagtttcgaccccaacaacaccaagccaagctcgcaccatcggccacaacacatcaaagtacggacaagacaaaaatagatgatt 46145617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 262
Target Start/End: Complemental strand, 4548559 - 4548443
Alignment:
Q  146 cgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatg 245  Q
    |||||||||||||| |||||||| | || |||||||| |||||| ||||| |||   ||| | ||||||||||| ||||||||||| | ||||||||  |    
T  4548559 cgcgatttcaaaccacctgcatattcaataaattgcacaaaatgatctgagatagtatgagaatcgaccccttcgacaccaagccaagcccacaccagag 4548460  T
Q  246 gccacaacgcaccaaaa 262  Q
    ||||||| |||||||||    
T  4548459 gccacaatgcaccaaaa 4548443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 146 - 262
Target Start/End: Original strand, 8360900 - 8361016
Alignment:
Q  146 cgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatg 245  Q
    |||||||||||||| |||||||| | || |||||| | |||||| ||||| ||| | ||| | || |||||||| ||||||||||| | || |||||| |    
T  8360900 cgcgatttcaaaccacctgcatattcaataaattgaacaaaatgatctgagatagcatgagaatctaccccttcgacaccaagccaagcccgcaccaaag 8360999  T
Q  246 gccacaacgcaccaaaa 262  Q
    ||||||| |||||||||    
T  8361000 gccacaatgcaccaaaa 8361016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 290
Target Start/End: Original strand, 7403728 - 7403857
Alignment:
Q  161 cctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaa 260  Q
    |||||||||| || ||||||||||||||| |||||| |    ||| | ||||||||| | || || ||||||| ||||||||||||||| || |||| ||    
T  7403728 cctgcataattaataaattgcaaaaaatgatctgaagttgattgagagtcgacccctaccactccgagccatgcccacaccaatggccataaggcactaa 7403827  T
Q  261 aagaaggataagacagaaacagatgattga 290  Q
    |||  ||| |||||| ||||| ||||||||    
T  7403828 aagttggacaagacaaaaacaaatgattga 7403857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 20002372 - 20002660
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatcattcga 100  Q
    ||||||||||||||||||||| ||  ||||||||||||||||||| | | |||| ||| |||||   |||||  || |||||||| ||||| || ||| |    
T  20002372 tagctttcaaccaccacaaggtatgtgattttactttatctaacaatagtggtatagaactttgacagttccgaaataacctgtcattccgttccttcaa 20002471  T
Q  101 caaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaata 199  Q
     |||| |||||||||  | ||||| || |  ||||| || ||  | ||  ||||||| || ||| |||| | || |||||||| |||||| ||||| |||    
T  20002472 taaaacccaaacacactgaagccaaatcaaatgaaataaagatcgacggaatttcaagccacctacatattcaataaattgcacaaaatgatctgagata 20002571  T
Q  200 acctgatattcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaaaagaaggataagacagaaacagatgatt 288  Q
     | ||| | || ||||||||  || ||||||||| || |||||  |||||||| ||||| ||| | ||| |||||| ||||| ||||||    
T  20002572 gcatgagaatctaccccttcggcatcaagccatgcccgcaccataggccacaatgcaccgaaaaatggacaagacaaaaacatatgatt 20002660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 55726079 - 55726035
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaaca 45  Q
    ||||||||||||||||||||| || ||||||||||||||||||||    
T  55726079 tagctttcaaccaccacaaggtatgagattttactttatctaaca 55726035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 5148315 - 5148359
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaaca 45  Q
    ||||||||||||||||||||| ||  |||||||||||||||||||    
T  5148315 tagctttcaaccaccacaaggtatgtgattttactttatctaaca 5148359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 12697467 - 12697511
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaaca 45  Q
    ||||||||||||||||||||| ||  |||||||||||||||||||    
T  12697467 tagctttcaaccaccacaaggtatttgattttactttatctaaca 12697511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 262
Target Start/End: Original strand, 12697613 - 12697729
Alignment:
Q  146 cgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatg 245  Q
    |||||||||||||| |||||||| | || |||||||| ||| || || || |||   ||| | ||||||||||| ||||||||||| | || |||||| |    
T  12697613 cgcgatttcaaaccacctgcatattcaataaattgcacaaagtgatcggagatagtatgagaatcgaccccttcgacaccaagccaagcccgcaccaaag 12697712  T
Q  246 gccacaacgcaccaaaa 262  Q
    |||| || |||||||||    
T  12697713 gccataatgcaccaaaa 12697729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 17402160 - 17402058
Alignment:
Q  13 accacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatcattcgacaaaatccaaac 112  Q
    ||||||| ||| | |||||||||||||||||||| || |||| |||||||| | |||| || || | ||| || ||||| |||||| ||||||  |||||    
T  17402160 accacaaagaagatgattttactttatctaacatatgtggtaaagagctttttctgtttctaaatagcctatcattccgttcattccacaaaactcaaac 17402061  T
Q  113 aca 115  Q
    |||    
T  17402060 aca 17402058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 11587684 - 11587631
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaacatttgcggta 54  Q
    ||||||| ||||||||||| ||| | ||||||||||| ||||||||||| ||||    
T  11587684 tagcttttaaccaccacaaagaagatgattttactttgtctaacatttgtggta 11587631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 14137328 - 14137364
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttacttt 37  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  14137328 tagctttcaaccaccacaaagaataatattttacttt 14137364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 36223575 - 36223531
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaaca 45  Q
    ||||||||| | | ||||||||||| |||||||||||||||||||    
T  36223575 tagctttcagctatcacaaggaatatgattttactttatctaaca 36223531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 54483645 - 54483601
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaaca 45  Q
    ||||||||| ||||||||||| ||  |||||||||||||||||||    
T  54483645 tagctttcagccaccacaaggtatttgattttactttatctaaca 54483601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 295
Target Start/End: Original strand, 2490869 - 2491161
Alignment:
Q  4 ctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatcattcgacaa 103  Q
    |||||| |||||||| ||||||||||||||||||||||||||  || |||| ||| || ||  | || ||||| |  || || ||||| |||||| ||||    
T  2490869 ctttcagccaccacagggaataagattttactttatctaacaaatgtggtaaagaactatgattattactgaaaacgctatcattccgctcattccacaa 2490968  T
Q  104 aatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacc 202  Q
     ||||||||||| || ||||| || || || ||||| ||  | || | | || |||| |||||||||| || ||| |||||| |||||||||  || | |    
T  2490969 tatccaaacacacagcagccaaattagatggaaaaaagatcgtcgtgctctcgaaccacctgcataattaataaactgcaaacaatggtctgttatgaac 2491068  T
Q  203 tgatattcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaaaagaaggataagacagaaacagatgattgatgtcc 295  Q
    |||  ||||||||| |||||||||||||| |  |||||||  |||||||||||||||||  | ||| |||||||||| |||||||||| ||||    
T  2491069 tgagtttcgaccccatcaacaccaagccaagctcacaccatcggccacaacgcaccaaagtacggacaagacagaaaaagatgattgacgtcc 2491161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 4646544 - 4646342
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatcattcga 100  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||  ||  ||| ||||||||||   ||||| || ||||| |  || || || ||| |    
T  4646544 tagctttcaaccaccacaaagaatatgattttactttatctaacagatgtagtatagagctttgttgattcctaaataacctcttatttcgttcgttcca 4646445  T
Q  101 caaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaata 199  Q
    ||| | ||||||||| | ||| ||||| || |||||||  ||  |||||||||||| ||| ||| |||||| || ||||||||| || || || ||||||    
T  4646444 caatacccaaacacacaagagtcatatcagatgaaaaagggatcgccgcgatttcagaccacctacataattaataaattgcaagaagtgatccgaaata 4646345  T
Q  200 acc 202  Q
    |||    
T  4646344 acc 4646342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 6478173 - 6478292
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaacat-----ttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatca 95  Q
    ||||||| | ||||||||||||||| ||||||||||||||||||||      |||||||||||||||||| | || ||||| |  || || ||||| |||    
T  6478173 tagcttttagccaccacaaggaatatgattttactttatctaacatatgcgatgcggtagagagctttgtctatttctgaaaactctatcattccgctca 6478272  T
Q  96 ttcgacaaaatccaaacaca 115  Q
     || ||||||||||||||||    
T  6478273 gtccacaaaatccaaacaca 6478292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 28351380 - 28351424
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaaca 45  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||    
T  28351380 tagctttcaaccaccacaatgaatatgattttactttatctaaca 28351424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 146 - 262
Target Start/End: Original strand, 43388167 - 43388283
Alignment:
Q  146 cgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatg 245  Q
    |||||||||||||| |||||||| | || |||||||| ||| || | ||| |||   ||| | ||||||||||| ||||||||||| | || |||||| |    
T  43388167 cgcgatttcaaaccacctgcatattcaataaattgcacaaagtgatatgagatagtatgagaatcgaccccttcgacaccaagccaagcccgcaccaaag 43388266  T
Q  246 gccacaacgcaccaaaa 262  Q
    ||||||| |||||||||    
T  43388267 gccacaatgcaccaaaa 43388283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 37192413 - 37192369
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaaca 45  Q
    ||||||||||||||||||||| ||  |||||||||||||||||||    
T  37192413 tagctttcaaccaccacaaggtatgtgattttactttatctaaca 37192369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 47623551 - 47623491
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagct 61  Q
    ||||||| ||||||||||| ||| | ||||||||||| ||||||||||| |||| ||||||    
T  47623551 tagcttttaaccaccacaaagaagatgattttactttgtctaacatttgtggtaaagagct 47623491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 201
Target Start/End: Complemental strand, 23635063 - 23635008
Alignment:
Q  146 cgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataac 201  Q
    |||||||||||||  |||||||||| || ||||||||| ||||| |||||||||||    
T  23635063 cgcgatttcaaactacctgcataattaataaattgcaagaaatgatctgaaataac 23635008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 23635206 - 23635163
Alignment:
Q  3 gctttcaaccaccacaaggaataagattttactttatctaacat 46  Q
    ||||||||||||||||  ||||| ||||||||||||||||||||    
T  23635206 gctttcaaccaccacagagaatatgattttactttatctaacat 23635163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 16918295 - 16918254
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatcta 42  Q
    ||||||||||||||||||||| ||  ||||||||||||||||    
T  16918295 tagctttcaaccaccacaaggtatttgattttactttatcta 16918254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 43388024 - 43388065
Alignment:
Q  4 ctttcaaccaccacaaggaataagattttactttatctaaca 45  Q
    |||||||||||||||||| ||  |||||||||||||||||||    
T  43388024 ctttcaaccaccacaaggtatttgattttactttatctaaca 43388065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 288
Target Start/End: Complemental strand, 16918147 - 16918007
Alignment:
Q  148 cgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatggc 247  Q
    |||| |||| || |||||||| | || |||||||| ||| || ||||| |||   ||| | ||||||||||| ||||||||||| | || |||||  |||    
T  16918147 cgatgtcaagccacctgcatattcaataaattgcacaaagtgatctgacatagtatgagaatcgaccccttcgacaccaagccaagcccgcaccagaggc 16918048  T
Q  248 cacaacgcaccaaaagaaggataagacagaaacagatgatt 288  Q
    ||||| ||||||||||  ||| |||||| ||| | ||||||    
T  16918047 cacaaagcaccaaaagtcggacaagacaaaaataaatgatt 16918007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 30713363 - 30713323
Alignment:
Q  3 gctttcaaccaccacaaggaataagattttactttatctaa 43  Q
    |||||||||||||| || |||||| ||||||||||||||||    
T  30713363 gctttcaaccaccataatgaataatattttactttatctaa 30713323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 12257937 - 12257740
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtc----gttccgatcat 96  Q
    |||||||||||||||||| | |||| |||||||||||||||||||| |||| ||| ||||||||| | |||||||| |  || ||     ||||| ||||    
T  12257937 tagctttcaaccaccacatgtaatatgattttactttatctaacatatgcgatagtgagctttgtttattcctgaaaactctatcattaattccgctcat 12257838  T
Q  97 tcgacaaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtct 193  Q
    || |||| | ||||||||| | ||||||||||||||||||||||||  |  ||||| ||||||| |||| ||||| ||  |||||||| |||||||||    
T  12257837 tccacaacacccaaacacataagagccatataaggtgaaaaaacgagcgttgcgatctcaaaccacctgaataattaatgaattgcaagaaatggtct 12257740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 12265329 - 12265132
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtc----gttccgatcat 96  Q
    |||||||||||||||||| | |||| |||||||||||||||||||| |||| ||| ||||||||| | |||||||| |  || ||     ||||| ||||    
T  12265329 tagctttcaaccaccacatgtaatatgattttactttatctaacatatgcgatagtgagctttgtttattcctgaaaactctatcattaattccgctcat 12265230  T
Q  97 tcgacaaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtct 193  Q
    || |||| | ||||||||| | ||||||||||||||||||||||||  |  ||||| ||||||| |||| ||||| ||  |||||||| |||||||||    
T  12265229 tccacaacacccaaacacataagagccatataaggtgaaaaaacgagcgttgcgatctcaaaccacctgaataattaatgaattgcaagaaatggtct 12265132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 146 - 262
Target Start/End: Original strand, 37433932 - 37434048
Alignment:
Q  146 cgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatg 245  Q
    |||||||||||||| || ||||| | || |||||||| |||||| ||||| ||| | ||| | ||||||||||| |||| |||||| | || |||||| |    
T  37433932 cgcgatttcaaaccacccgcatattcaataaattgcacaaaatgatctgagatagcatgagaatcgaccccttcgacacaaagccaagcccgcaccaaag 37434031  T
Q  246 gccacaacgcaccaaaa 262  Q
    ||||||| |||||||||    
T  37434032 gccacaatgcaccaaaa 37434048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 2529540 - 2529584
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaaca 45  Q
    ||||||||||||||||||||| || ||||||||||||||||||||    
T  2529540 tagctttcaaccaccacaaggtatgagattttactttatctaaca 2529584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 288
Target Start/End: Original strand, 2170143 - 2170282
Alignment:
Q  149 gatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatggcc 248  Q
    |||||||| || |||||||| | || |||||||| |||||| ||||| ||| | ||| | || |||||||| ||||||||||| | || |||||  ||||    
T  2170143 gatttcaagccacctgcatattcaataaattgcacaaaatgatctgagatagcatgagaatctaccccttcgacaccaagccaagcccgcaccataggcc 2170242  T
Q  249 acaacgcaccaaaagaaggataagacagaaacagatgatt 288  Q
    |||| |||||||||   ||| |||||| ||||| ||||||    
T  2170243 acaatgcaccaaaaattggacaagacaaaaacaaatgatt 2170282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 25090041 - 25090098
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagaga 58  Q
    ||||||||| ||||||||||||||  |||||||||||||||||||  || ||||||||    
T  25090041 tagctttcagccaccacaaggaatttgattttactttatctaacaactgtggtagaga 25090098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 262
Target Start/End: Complemental strand, 34137300 - 34137187
Alignment:
Q  149 gatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatggcc 248  Q
    ||||||||||  ||||||||||||| ||||||||||||||||||  |||||  ||||   || ||  ||||||| || |||||   || |||||||||||    
T  34137300 gatttcaaacaacctgcataatgaataaattgcaaaaaatggtccaaaatatgctgagggtcaacagcttcaacccctagccactccctcaccaatggcc 34137201  T
Q  249 acaacgcaccaaaa 262  Q
    |||| |||||||||    
T  34137200 acaaggcaccaaaa 34137187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 136574 - 136614
Alignment:
Q  3 gctttcaaccaccacaaggaataagattttactttatctaa 43  Q
    |||||||||||||||||||||||| | ||||||||||||||    
T  136574 gctttcaaccaccacaaggaataaaactttactttatctaa 136614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 13199777 - 13199821
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaaca 45  Q
    |||||||| |||||||||||| || ||||||||||||||||||||    
T  13199777 tagctttcgaccaccacaaggtatgagattttactttatctaaca 13199821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 262
Target Start/End: Original strand, 17699286 - 17699398
Alignment:
Q  150 atttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatggcca 249  Q
    ||||||| || |||||||| | || |||||||| |||||| ||||| ||| | ||| | || |||||||| ||||||||||| | || |||||| || ||    
T  17699286 atttcaagccacctgcatattcaataaattgcacaaaatgatctgagatagcatgagaatctaccccttcgacaccaagccaagcccgcaccaaaggtca 17699385  T
Q  250 caacgcaccaaaa 262  Q
    ||| |||||||||    
T  17699386 caatgcaccaaaa 17699398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 18309402 - 18309362
Alignment:
Q  3 gctttcaaccaccacaaggaataagattttactttatctaa 43  Q
    |||||||||||||||||||||||| | ||||||||||||||    
T  18309402 gctttcaaccaccacaaggaataaaactttactttatctaa 18309362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 288
Target Start/End: Original strand, 5181533 - 5181612
Alignment:
Q  209 tcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaaaagaaggataagacagaaacagatgatt 288  Q
    ||||||||| | ||||| ||||||| | |||||||||||||||| ||||||||||  ||  |||||| ||||| ||||||    
T  5181533 tcgacccctaccacaccgagccatgcctacaccaatggccacaaggcaccaaaagttgggcaagacaaaaacatatgatt 5181612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 288
Target Start/End: Original strand, 43270253 - 43270392
Alignment:
Q  149 gatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatggcc 248  Q
    |||||||| || |||||||| | || |||||||| |||||| ||||| ||| | ||| | || |||||||| ||||||||||| | || |||||  | ||    
T  43270253 gatttcaagccacctgcatattcaataaattgcacaaaatgatctgagatagcatgagaatctaccccttcgacaccaagccaagcccgcaccatagacc 43270352  T
Q  249 acaacgcaccaaaagaaggataagacagaaacagatgatt 288  Q
    |||| |||||||||   ||| |||||| ||||| ||||||    
T  43270353 acaatgcaccaaaaattggacaagacaaaaacaaatgatt 43270392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 288
Target Start/End: Original strand, 20824096 - 20824238
Alignment:
Q  146 cgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatg 245  Q
    ||||||||||| || |||||||| | || |||| ||| ||| || ||||| |||   ||| | ||||||||||| ||||||||||| | || |||||  |    
T  20824096 cgcgatttcaagccacctgcatattcaataaatcgcacaaagtgatctgagatagtatgagaatcgaccccttcgacaccaagccaagcccgcaccagag 20824195  T
Q  246 gccacaacgcaccaaaagaaggataagacagaaacagatgatt 288  Q
    ||||||| ||||||||||  ||| |||||| ||| | ||||||    
T  20824196 gccacaaagcaccaaaagtcggacaagacaaaaataaatgatt 20824238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 37433788 - 37433830
Alignment:
Q  3 gctttcaaccaccacaaggaataagattttactttatctaaca 45  Q
    ||||||||||||||||||| ||  |||||||||||||||||||    
T  37433788 gctttcaaccaccacaaggtatttgattttactttatctaaca 37433830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 2169994 - 2170035
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatcta 42  Q
    ||||||||||||||||||||| ||  ||||||||||||||||    
T  2169994 tagctttcaaccaccacaaggtatgtgattttactttatcta 2170035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 20823950 - 20823991
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatcta 42  Q
    ||||||||||||||||||||| ||  ||||||||||||||||    
T  20823950 tagctttcaaccaccacaaggtatttgattttactttatcta 20823991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 17699140 - 17699180
Alignment:
Q  5 tttcaaccaccacaaggaataagattttactttatctaaca 45  Q
    ||||||||||||||||| ||  |||||||||||||||||||    
T  17699140 tttcaaccaccacaaggtatttgattttactttatctaaca 17699180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 25890718 - 25890758
Alignment:
Q  3 gctttcaaccaccacaaggaataagattttactttatctaa 43  Q
    ||||||||||||||||| |||||| | ||||||||||||||    
T  25890718 gctttcaaccaccacaaagaataaaactttactttatctaa 25890758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 34137449 - 34137401
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaacatttg 49  Q
    ||||||| ||||||||||| ||| | ||||||||||| |||||||||||    
T  34137449 tagcttttaaccaccacaatgaagatgattttactttgtctaacatttg 34137401  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 48394558 - 48394617
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagc 60  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||    
T  48394558 tagctttcaaccaccacaaggaatatgattttattttatctaacatatgcggtagagagc 48394617  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 37254412 - 37254700
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatcattcga 100  Q
    ||||||||||||||||||||| ||  ||||||||||||||||||| ||| |||| ||| |||||   |||||  || |||||| | ||||  |||||| |    
T  37254412 tagctttcaaccaccacaaggtatgtgattttactttatctaacaattgtggtatagaactttgacagttccgaaataacctgccattccattcattcca 37254511  T
Q  101 caaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaata 199  Q
     |||| |||||||||  | ||||| ||||  ||||| || ||  | || |||| ||| || |||||||| | || |||||||| |||||| ||||| |||    
T  37254512 taaaacccaaacacactgaagccaaataaaatgaaataaagatcgacgggattccaagccacctgcatattcaataaattgcacaaaatgatctgagata 37254611  T
Q  200 acctgatattcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaaaagaaggataagacagaaacagatgatt 288  Q
     | ||| | |  |||||||| ||||||||||||| || |||||  |||||||| ||||| |||   ||| |||||| ||||| ||||||    
T  37254612 gcatgagaatttaccccttcgacaccaagccatgcccgcaccataggccacaatgcaccgaaaattggacaagacaaaaacatatgatt 37254700  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 293
Target Start/End: Original strand, 18530310 - 18530457
Alignment:
Q  146 cgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatg 245  Q
    ||||||||||| || |||||||| | || |||||||| |||||| ||||| ||| | ||| | || |||||||| ||||||||||| | || |||||  |    
T  18530310 cgcgatttcaagccacctgcatattcaataaattgcacaaaatgatctgatatagcatgagaatctaccccttcgacaccaagccaagcccgcaccatag 18530409  T
Q  246 gccacaacgcaccaaaagaaggataagacagaaacagatgattgatgt 293  Q
    ||||||| |||||||||   ||| |||||| ||||| |||||| ||||    
T  18530410 gccacaatgcaccaaaaattggacaagacaaaaacaaatgattcatgt 18530457  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 25619113 - 25619157
Alignment:
Q  1 tagctttcaaccaccacaaggaataagattttactttatctaaca 45  Q
    |||||||||||||||| |||| ||  |||||||||||||||||||    
T  25619113 tagctttcaaccaccataaggtatgtgattttactttatctaaca 25619157  T

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