View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6978_high_31 (Length: 295)

Name: NF6978_high_31
Description: NF6978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6978_high_31
NF6978_high_31
[»] chr2 (3 HSPs)
chr2 (129-284)||(1521650-1521804)
chr2 (129-244)||(1522325-1522440)
chr2 (135-175)||(10174698-10174738)
[»] chr5 (4 HSPs)
chr5 (129-284)||(6697262-6697416)
chr5 (133-268)||(6695792-6695925)
chr5 (18-62)||(42644126-42644170)
chr5 (129-175)||(38558947-38558993)
[»] chr3 (10 HSPs)
chr3 (129-284)||(45781551-45781705)
chr3 (129-178)||(32558807-32558856)
chr3 (137-214)||(45782234-45782311)
chr3 (129-178)||(52717123-52717172)
chr3 (129-175)||(53343106-53343152)
chr3 (129-178)||(7050977-7051026)
chr3 (132-175)||(25694074-25694117)
chr3 (129-175)||(25694863-25694909)
chr3 (129-167)||(32558219-32558257)
chr3 (194-223)||(45781183-45781212)
[»] chr4 (2 HSPs)
chr4 (130-284)||(51281986-51282139)
chr4 (130-175)||(21838250-21838295)
[»] chr8 (3 HSPs)
chr8 (129-281)||(14706279-14706430)
chr8 (129-266)||(14706939-14707075)
chr8 (124-176)||(40600657-40600709)
[»] chr6 (3 HSPs)
chr6 (129-244)||(7683447-7683562)
chr6 (135-175)||(13084175-13084215)
chr6 (134-170)||(14050191-14050227)
[»] chr1 (1 HSPs)
chr1 (137-175)||(45499984-45500022)
[»] chr7 (1 HSPs)
chr7 (129-175)||(22297897-22297943)


Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 129 - 284
Target Start/End: Original strand, 1521650 - 1521804
Alignment:
Q  129 gtggattctagggtgaaccatcaaacaagtggttcaccggtggaccatttaatttttaccatcagataagattaatggtctagatctaccataattaaaa 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1521650 gtggattctagggtgaaccatcaaacaagtggttcaccggtggaccatttaatttttaccatcagataagattaatggtctagatctaccataattaaaa 1521749  T
Q  229 aagagaatatttacaaattgcccacatacaatcctgtcatacctcaccctcttcat 284  Q
     ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  1521750 gagagaatatttac-aattgcccacatacaatcctgtcatacctcaccttcttcat 1521804  T

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Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 129 - 244
Target Start/End: Complemental strand, 1522440 - 1522325
Alignment:
Q  129 gtggattctagggtgaaccatcaaacaagtggttcaccggtggaccatttaatttttaccatcagataagattaatggtctagatctaccataattaaaa 228  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||| || |||||| |  | ||||||||    
T  1522440 gtggattctaggatgaaccatcaaacaagtggttcaccggtggaccatttaatatttaccatcagatgagatcaattgtttagatccattaaaattaaaa 1522341  T
Q  229 aagagaatatttacaa 244  Q
    ||||||||||||||||    
T  1522340 aagagaatatttacaa 1522325  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 10174738 - 10174698
Alignment:
Q  135 tctagggtgaaccatcaaacaagtggttcaccggtggacca 175  Q
    ||||||||||||||||||  || ||||||||||||||||||    
T  10174738 tctagggtgaaccatcaactaaatggttcaccggtggacca 10174698  T

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Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 129 - 284
Target Start/End: Complemental strand, 6697416 - 6697262
Alignment:
Q  129 gtggattctagggtgaaccatcaaacaagtggttcaccggtggaccatttaatttttaccatcagataagattaatggtctagatctaccataattaaaa 228  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  6697416 gtggattctagggtgaaccatcaaataagtggttcaccggcggaccatttaatttttaccatcagataagattaatggtctagatctatcataattaaaa 6697317  T
Q  229 aagagaatatttacaaattgcccacatacaatcctgtcatacctcaccctcttcat 284  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  6697316 aagagaatatttac-aattgcccacatacaatcctgtcatacctcaccttcttcat 6697262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 133 - 268
Target Start/End: Original strand, 6695792 - 6695925
Alignment:
Q  133 attctagggtgaaccatcaaacaagtggttcaccggtggaccatttaatttttaccatcagataagattaatggtctagatctaccataattaaaaaaga 232  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||| |||| |||||||| |||| |||||| |||||| |  | ||||||||||||    
T  6695792 attctagggtgaaccatcaaataagtggttcaccggtggacca-ttaatatttatcatcagatgagatcaatggtttagatccattaaaattaaaaaaga 6695890  T
Q  233 gaatatttacaaattgcccacatacaatcctgtcat 268  Q
    |||||||||| ||||| ||||| |||||| ||||||    
T  6695891 gaatatttac-aattgaccacacacaatcttgtcat 6695925  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 42644126 - 42644170
Alignment:
Q  18 gtaaattgatcattaacagcactttaattatctttttgtgaaatg 62  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  42644126 gtaaattgatcattaacagcactttaattatctttttgtgaaatg 42644170  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 38558947 - 38558993
Alignment:
Q  129 gtggattctagggtgaaccatcaaacaagtggttcaccggtggacca 175  Q
    |||||||||||| |||||||| ||| |||||||||| ||||||||||    
T  38558947 gtggattctaggatgaaccattaaataagtggttcatcggtggacca 38558993  T

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Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 129 - 284
Target Start/End: Original strand, 45781551 - 45781705
Alignment:
Q  129 gtggattctagggtgaaccatcaaacaagtggttcaccggtggaccatttaatttttaccatcagataagattaatggtctagatctaccataattaaaa 228  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45781551 gtggattctagggtgaaccatcaaacaaatggttcaccggtggaccatttaatttttaccatcagataagattaatggtctagatctaccataattaaaa 45781650  T
Q  229 aagagaatatttacaaattgcccacatacaatcctgtcatacctcaccctcttcat 284  Q
    || ||||||||||| ||||||||||||| ||||||||||||||||||| |||||||    
T  45781651 aatagaatatttac-aattgcccacatagaatcctgtcatacctcaccttcttcat 45781705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 32558856 - 32558807
Alignment:
Q  129 gtggattctagggtgaaccatcaaacaagtggttcaccggtggaccattt 178  Q
    |||||||| |||||||||||||||| ||||| ||||||||||||||||||    
T  32558856 gtggattccagggtgaaccatcaaataagtgattcaccggtggaccattt 32558807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 214
Target Start/End: Complemental strand, 45782311 - 45782234
Alignment:
Q  137 tagggtgaaccatcaaacaagtggttcaccggtggaccatttaatttttaccatcagataagattaatggtctagatc 214  Q
    |||| ||||||||||||||||||||||| || |||  |||||||| |||| |||||||| |||| |||||| ||||||    
T  45782311 taggatgaaccatcaaacaagtggttcatcgatggttcatttaatatttatcatcagatgagatcaatggtttagatc 45782234  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 52717123 - 52717172
Alignment:
Q  129 gtggattctagggtgaaccatcaaacaagtggttcaccggtggaccattt 178  Q
    ||||||||||||||||||||||||| || || ||||||||||||||||||    
T  52717123 gtggattctagggtgaaccatcaaataactgattcaccggtggaccattt 52717172  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 53343106 - 53343152
Alignment:
Q  129 gtggattctagggtgaaccatcaaacaagtggttcaccggtggacca 175  Q
    |||||||||||| |||||||||||| |||||||||| ||||||||||    
T  53343106 gtggattctaggatgaaccatcaaataagtggttcatcggtggacca 53343152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 7051026 - 7050977
Alignment:
Q  129 gtggattctagggtgaaccatcaaacaagtggttcaccggtggaccattt 178  Q
    ||||||||||||||||||||||||| ||||| |||| ||||||| |||||    
T  7051026 gtggattctagggtgaaccatcaaataagtgattcatcggtggatcattt 7050977  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 175
Target Start/End: Complemental strand, 25694117 - 25694074
Alignment:
Q  132 gattctagggtgaaccatcaaacaagtggttcaccggtggacca 175  Q
    |||||||| ||||||||||| | |||||||||||||||||||||    
T  25694117 gattctagagtgaaccatcatataagtggttcaccggtggacca 25694074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 25694909 - 25694863
Alignment:
Q  129 gtggattctagggtgaaccatcaaacaagtggttcaccggtggacca 175  Q
    ||||||||||| ||||||||||| | |||||||||| ||||||||||    
T  25694909 gtggattctagagtgaaccatcatataagtggttcatcggtggacca 25694863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 167
Target Start/End: Original strand, 32558219 - 32558257
Alignment:
Q  129 gtggattctagggtgaaccatcaaacaagtggttcaccg 167  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  32558219 gtggattctagggtgaaccatcaactaagtggttcaccg 32558257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 223
Target Start/End: Complemental strand, 45781212 - 45781183
Alignment:
Q  194 ataagattaatggtctagatctaccataat 223  Q
    ||||||||||||||||||||||||||||||    
T  45781212 ataagattaatggtctagatctaccataat 45781183  T

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Target: chr4 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 130 - 284
Target Start/End: Complemental strand, 51282139 - 51281986
Alignment:
Q  130 tggattctagggtgaaccatcaaacaagtggttcaccggtggaccatttaatttttaccatcagataagattaatggtctagatctaccataattaaaaa 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  51282139 tggattctagggtgaaccatcaaacaagtggttcaccggtggaccatttaatttttaccatcaaataagattaatggtctagatctaccataattaaaaa 51282040  T
Q  230 agagaatatttacaaattgcccacatacaatcctgtcatacctcaccctcttcat 284  Q
    ||||||||||||| ||||| |||||||||||| |||||||||||||| |||||||    
T  51282039 agagaatatttac-aattgtccacatacaatcatgtcatacctcaccttcttcat 51281986  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 175
Target Start/End: Complemental strand, 21838295 - 21838250
Alignment:
Q  130 tggattctagggtgaaccatcaaacaagtggttcaccggtggacca 175  Q
    ||||||||||| |||||||||||  |||||||||| ||||||||||    
T  21838295 tggattctaggatgaaccatcaattaagtggttcatcggtggacca 21838250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 7e-55; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 129 - 281
Target Start/End: Original strand, 14706279 - 14706430
Alignment:
Q  129 gtggattctagggtgaaccatcaaacaagtggttcaccggtggaccatttaatttttaccatcagataagattaatggtctagatctaccataattaaaa 228  Q
    |||||||||||||||||||||||||||| | ||||| ||||| |||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||    
T  14706279 gtggattctagggtgaaccatcaaacaaatagttcatcggtgaaccatttaatttttaccatcagataagattaacggtatagatcaaccataattaaaa 14706378  T
Q  229 aagagaatatttacaaattgcccacatacaatcctgtcatacctcaccctctt 281  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||| ||||    
T  14706379 aagagaatatttac-aattgcccacatacaatcttgtcatacctcaccttctt 14706430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 129 - 266
Target Start/End: Complemental strand, 14707075 - 14706939
Alignment:
Q  129 gtggattctagggtgaaccatcaaacaagtggttcaccggtggaccatttaatttttaccatcagataagattaatggtctagatctaccataattaaaa 228  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||| | || |||||| |||||| |  | |||| |||    
T  14707075 gtggattctagggtgaaccatcaaacaagtggttcaccggtggttcatttaatatttaccatcagatgatatcaatggtttagatccattaaaatttaaa 14706976  T
Q  229 aagagaatatttacaaattgcccacatacaatcctgtc 266  Q
    ||||||||||| || ||||| ||||| |||||| ||||    
T  14706975 aagagaatattgac-aattgaccacacacaatcttgtc 14706939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 40600709 - 40600657
Alignment:
Q  124 aaaccgtggattctagggtgaaccatcaaacaagtggttcaccggtggaccat 176  Q
    |||| ||||||| |||| |||||||||||| |||||||||| |||||||||||    
T  40600709 aaacggtggattttaggatgaaccatcaaataagtggttcatcggtggaccat 40600657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 129 - 244
Target Start/End: Complemental strand, 7683562 - 7683447
Alignment:
Q  129 gtggattctagggtgaaccatcaaacaagtggttcaccggtggaccatttaatttttaccatcagataagattaatggtctagatctaccataattaaaa 228  Q
    ||||||||||||||||| |||||||||| ||||||||||||||| |||||||| ||||||||||||| |||| || ||| |||||| |  | ||||||||    
T  7683562 gtggattctagggtgaatcatcaaacaaatggttcaccggtggatcatttaatatttaccatcagatgagatcaagggtttagatccattaaaattaaaa 7683463  T
Q  229 aagagaatatttacaa 244  Q
    ||| ||||||||||||    
T  7683462 aagtgaatatttacaa 7683447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 13084175 - 13084215
Alignment:
Q  135 tctagggtgaaccatcaaacaagtggttcaccggtggacca 175  Q
    ||||||||||||||||||  ||||||||||||| |||||||    
T  13084175 tctagggtgaaccatcaattaagtggttcaccgatggacca 13084215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 14050191 - 14050227
Alignment:
Q  134 ttctagggtgaaccatcaaacaagtggttcaccggtg 170  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  14050191 ttctaggatgaaccatcaaacaagtggttcatcggtg 14050227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 175
Target Start/End: Original strand, 45499984 - 45500022
Alignment:
Q  137 tagggtgaaccatcaaacaagtggttcaccggtggacca 175  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  45499984 tagggtgaaccatcaaataagtggttcaccggtggacca 45500022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 22297943 - 22297897
Alignment:
Q  129 gtggattctagggtgaaccatcaaacaagtggttcaccggtggacca 175  Q
    ||||||||||| ||||||||||||  |||||||||| ||||||||||    
T  22297943 gtggattctagagtgaaccatcaattaagtggttcatcggtggacca 22297897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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