View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6978_high_33 (Length: 291)
Name: NF6978_high_33
Description: NF6978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6978_high_33 |
 | |
|
| [»] scaffold0024 (1 HSPs) |
| | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 13 - 273
Target Start/End: Original strand, 7253348 - 7253614
Alignment:
| Q |
13 |
aatattatagttatatattccatgtgagattagtcacttgctcagtatgtagattatcaaatatcatattctcataattatatttaaaacttatcttctt |
112 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7253348 |
aatattataattatatattccatgtgagattagtcacttgctcagaatgtagattatcaaatatcatattctcataattatatttaaaacttatcttctt |
7253447 |
T |
|
| Q |
113 |
tcttagagcatttataatga-ggatgttttagttatttaacac-----aaagctaaattggcaattcctatgaagcacggatatatacacaaatatcaga |
206 |
Q |
| |
|
|||||| ||||||||||||| |||| ||||||||||||||||| ||||||||||||| |||| ||||||| ||||||||| |||| | |||| || |
|
|
| T |
7253448 |
tcttagtgcatttataatgatggatattttagttatttaacacaaattaaagctaaattgggaatttctatgaaacacggatatgtacatagatattgga |
7253547 |
T |
|
| Q |
207 |
aacgatacggatactgacacaccgacgtccttaataatatgagaaaatcatataatttagtctaatt |
273 |
Q |
| |
|
|||||||| |||| |||||||||||| | ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7253548 |
aacgatacagatatcgacacaccgacgcctttaataatatgagaaaatcatataatttagtataatt |
7253614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 275
Target Start/End: Original strand, 12927646 - 12927699
Alignment:
| Q |
222 |
gacacaccgacgtccttaataatatgagaaaatcatataatttagtctaattat |
275 |
Q |
| |
|
||||||||||| || ||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
12927646 |
gacacaccgacatcgctaataatttgagaaaatcatataatttagtgtaattat |
12927699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 275
Target Start/End: Complemental strand, 68294 - 68256
Alignment:
| Q |
237 |
ttaataatatgagaaaatcatataatttagtctaattat |
275 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
68294 |
ttaataatttgagaaaatcatataatttagtataattat |
68256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 275
Target Start/End: Complemental strand, 30527647 - 30527609
Alignment:
| Q |
237 |
ttaataatatgagaaaatcatataatttagtctaattat |
275 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
30527647 |
ttaataatttgagaaaatcatataatttagtgtaattat |
30527609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 275
Target Start/End: Complemental strand, 44081692 - 44081591
Alignment:
| Q |
174 |
ctatgaagcacggatatatacacaaatatcagaaacgatacggatactgacacaccgacgtccttaataatatgagaaaatcatataatttagtctaatt |
273 |
Q |
| |
|
||||||||||| |||| |||| || ||| || |||| | ||| ||||||||||||| || |||||||| ||| |||||||||||||||| | ||||| |
|
|
| T |
44081692 |
ctatgaagcaccgatacggacacgaacatcggacacgacaaggacactgacacaccgatatcgttaataatttgaaaaaatcatataatttaatgtaatt |
44081593 |
T |
|
| Q |
274 |
at |
275 |
Q |
| |
|
|| |
|
|
| T |
44081592 |
at |
44081591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 90832 - 90888
Alignment:
| Q |
219 |
actgacacaccgacgtccttaataatatgagaaaatcatataatttagtctaattat |
275 |
Q |
| |
|
||||||||||| || | |||||||| |||||||||||||||||| ||| ||||||| |
|
|
| T |
90832 |
actgacacaccaacaccattaataatttgagaaaatcatataattcagtgtaattat |
90888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 33384648 - 33384596
Alignment:
| Q |
223 |
acacaccgacgtccttaataatatgagaaaatcatataatttagtctaattat |
275 |
Q |
| |
|
|||||||||| | |||||||| |||||||||| ||||||||||| ||||||| |
|
|
| T |
33384648 |
acacaccgacaccgttaataatctgagaaaatcctataatttagtgtaattat |
33384596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 34298409 - 34298481
Alignment:
| Q |
203 |
cagaaacgatacggatactgacacaccgacgtccttaataatatgagaaaatcatataatttagtctaattat |
275 |
Q |
| |
|
|||| |||| ||||| |||||||||||||| | ||||||| ||||||||||| |||||| ||| ||||||| |
|
|
| T |
34298409 |
cagacacgacacggaaactgacacaccgacaccactaataatttgagaaaatcacataattcagtgtaattat |
34298481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University