View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6978_high_41 (Length: 234)
Name: NF6978_high_41
Description: NF6978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6978_high_41 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 12 - 220
Target Start/End: Original strand, 11164465 - 11164673
Alignment:
| Q |
12 |
ataatactggtggcagcagcaaaggtttgaagagaaactcgaatgggggcgggagcattgaggcgccacgacgcagtagaggccgaccgaagaagtctct |
111 |
Q |
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| T |
11164465 |
ataataatggtggcagcagcaaaggtttgaagagaaactcgaatgggggcgggagcattgaggcgccacgacgctgtagaggccgaccgaagaagtcgct |
11164564 |
T |
|
| Q |
112 |
ggtgggttcagcttcgggttcgaatagtaatgaattctattattattctgggtttggtccatcacggaggaaacaacgaaagggtgattgtaaaagtgaa |
211 |
Q |
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| T |
11164565 |
ggtgggttcagcttcgggttcgaatagtaatgaattctattattattctgggtttggtccatcgcggaggaaacaacgaaagggtgattgtaaaagtgaa |
11164664 |
T |
|
| Q |
212 |
ggtgaagat |
220 |
Q |
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||||||||| |
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| T |
11164665 |
ggtgaagat |
11164673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 143
Target Start/End: Original strand, 11157526 - 11157654
Alignment:
| Q |
12 |
ataatactggtggcagcagcaaaggtttgaagagaaactcgaatgggggcgggagcattgaggcgccacgacgcagtagaggccgaccgaagaagtctct |
111 |
Q |
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|||||| ||||||||||| |||||||||||||||||||| |||||||||||| |||||||||| || || || |||||||||||||||||||||| |
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| T |
11157526 |
ataataatggtggcagcaacaaaggtttgaagagaaactggaatgggggcggcggcattgaggctccgcggcgtggtagaggccgaccgaagaagtc--- |
11157622 |
T |
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| Q |
112 |
ggtgggttcagcttcgggttcgaatagtaatg |
143 |
Q |
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| T |
11157623 |
ggtgggttcggcttcgggttcaaataataatg |
11157654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 177
Target Start/End: Complemental strand, 4703712 - 4703547
Alignment:
| Q |
12 |
ataatactggtggcagcagcaaaggtttgaagagaaactcgaatgggggcgggagcattgaggcgccacgacgcagtagaggccgaccgaagaagtctct |
111 |
Q |
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|||||| ||||||| ||| ||||||||||||||||||||| |||||||| || |||||||||||| || || |||||||| ||||||||||| |
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| T |
4703712 |
ataataatggtggctgcaacaaaggtttgaagagaaactcaaatgggggaggagacattgaggcgccgcggcgtggtagaggcagaccgaagaaggtgaa |
4703613 |
T |
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| Q |
112 |
ggtgggttcagcttcgggttcgaatagtaatgaattctattattattctgggtttggtccatcacg |
177 |
Q |
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| || ||||||||| |||||||||| |||||||||||||| ||||||||||||||||||| |||| |
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| T |
4703612 |
agcggattcagcttcaggttcgaataataatgaattctatttttattctgggtttggtccaccacg |
4703547 |
T |
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