View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6978_high_45 (Length: 229)
Name: NF6978_high_45
Description: NF6978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6978_high_45 |
 | |
|
| [»] chr6 (5 HSPs) |
| |
|
| [»] chr2 (2 HSPs) |
| |
|
| [»] chr7 (4 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
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| [»] scaffold0045 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 9 - 229
Target Start/End: Original strand, 4714932 - 4715152
Alignment:
| Q |
9 |
gacatcacagagcacaatataaactcatgaacaaaacttgcaaattcatcctgaagtttatccttcacaatgtcagacctaacagccacttgtccgattg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4714932 |
gacatcacagagcacaatataaactcatgaacaaaacttgcaaattcatcctgaagtttatccttcacaatgtcagacctaacagccacttgtccgattg |
4715031 |
T |
|
| Q |
109 |
cactgtggatgtatgcccactcatatactacattctcaagggcttcaaggttgacatagcccgcacattagcatgggagttaaggctggtcacccttcaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4715032 |
cactgtggatgtatgcccactcatatactacattctcaagggcttcaaggttgacatagcccgcacattagcatgggagttaaggctggtcacccttcaa |
4715131 |
T |
|
| Q |
209 |
ggaaaaagtgagccaaaaacc |
229 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
4715132 |
ggaaaaagtgagccaaaaacc |
4715152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 9 - 229
Target Start/End: Original strand, 4734738 - 4734958
Alignment:
| Q |
9 |
gacatcacagagcacaatataaactcatgaacaaaacttgcaaattcatcctgaagtttatccttcacaatgtcagacctaacagccacttgtccgattg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4734738 |
gacatcacagagcacaatataaactcatgaacaaaacttgcaaattcatcctgaagtttatccttcacaatgtcagacctaacagccacttgtccgattg |
4734837 |
T |
|
| Q |
109 |
cactgtggatgtatgcccactcatatactacattctcaagggcttcaaggttgacatagcccgcacattagcatgggagttaaggctggtcacccttcaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4734838 |
cactgtggatgtatgcccactcatatactacattctcaagggcttcaaggttgacatagcccgcacattagcatgggagttaaggctggtcacccttcaa |
4734937 |
T |
|
| Q |
209 |
ggaaaaagtgagccaaaaacc |
229 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
4734938 |
ggaaaaagtgagccaaaaacc |
4734958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 229
Target Start/End: Original strand, 4709322 - 4709542
Alignment:
| Q |
9 |
gacatcacagagcacaatataaactcatgaacaaaacttgcaaattcatcctgaagtttatccttcacaatgtcagacctaacagccacttgtccgattg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4709322 |
gacatcacagagcacaatataaactcatgaacaaaacttgcaaattcatcctgaagtttatccttcacaatgtcagacctaacagccacttgtccgattg |
4709421 |
T |
|
| Q |
109 |
cactgtggatgtatgcccactcatatactacattctcaagggcttcaaggttgacatagcccgcacattagcatgggagttaaggctggtcacccttcaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4709422 |
cactgtggatgtatgcccactcatatactacattctcaagggcttcaaggtttacatagcccgcacattagcatgggagttaaggctggtcacccttcaa |
4709521 |
T |
|
| Q |
209 |
ggaaaaagtgagccaaaaacc |
229 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
4709522 |
ggaaaaagtgagccaaaaacc |
4709542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 9 - 229
Target Start/End: Original strand, 7066078 - 7066298
Alignment:
| Q |
9 |
gacatcacagagcacaatataaactcatgaacaaaacttgcaaattcatcctgaagtttatccttcacaatgtcagacctaacagccacttgtccgattg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7066078 |
gacatcacagagcacaatataaactcatgaacaaaacttgcaaattcatcttgaagtttatccttcacaatgtcagacctaacagccacttgtccgattg |
7066177 |
T |
|
| Q |
109 |
cactgtggatgtatgcccactcatatactacattctcaagggcttcaaggttgacatagcccgcacattagcatgggagttaaggctggtcacccttcaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
7066178 |
cactgtggatgtatgcccactcatatactacattctcaagggcttcaaggttgacatagcccgcacattagcatgggagttaaggctggtcaccctccaa |
7066277 |
T |
|
| Q |
209 |
ggaaaaagtgagccaaaaacc |
229 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
7066278 |
ggaaaaagtgagccaaaaacc |
7066298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 9 - 229
Target Start/End: Original strand, 4023031 - 4023251
Alignment:
| Q |
9 |
gacatcacagagcacaatataaactcatgaacaaaacttgcaaattcatcctgaagtttatccttcacaatgtcagacctaacagccacttgtccgattg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4023031 |
gacatcacagagcacaatataaactcatgaacaaaacttgcaaattcatcttgaagtttatccttcacaatgtcagacctaacaaccacttgtccgattg |
4023130 |
T |
|
| Q |
109 |
cactgtggatgtatgcccactcatatactacattctcaagggcttcaaggttgacatagcccgcacattagcatgggagttaaggctggtcacccttcaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4023131 |
cactgtggatgtatgcccactcatatactacattctcaagggcttcaaggttgacatagcccgcacattagcatgggagttaaggctggtcaccctccaa |
4023230 |
T |
|
| Q |
209 |
ggaaaaagtgagccaaaaacc |
229 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
4023231 |
ggaaaaagtgagccaaaaacc |
4023251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 9 - 229
Target Start/End: Original strand, 34837646 - 34837866
Alignment:
| Q |
9 |
gacatcacagagcacaatataaactcatgaacaaaacttgcaaattcatcctgaagtttatccttcacaatgtcagacctaacagccacttgtccgattg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34837646 |
gacatcacagagcacaatataaactcatgaacaaaacttgcaaattcatcctgaagtttatccttcacaatgtcagacctaacagccacttgtccgattg |
34837745 |
T |
|
| Q |
109 |
cactgtggatgtatgcccactcatatactacattctcaagggcttcaaggttgacatagcccgcacattagcatgggagttaaggctggtcacccttcaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34837746 |
cactgtggatgtatgcccactcatatactacattctcaagggcttcaaggttgacatagcccgcacattagcatgggagttaaggctggtcacccttcaa |
34837845 |
T |
|
| Q |
209 |
ggaaaaagtgagccaaaaacc |
229 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
34837846 |
ggaaaaagtgagccaaaaacc |
34837866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 9 - 229
Target Start/End: Complemental strand, 2161428 - 2161208
Alignment:
| Q |
9 |
gacatcacagagcacaatataaactcatgaacaaaacttgcaaattcatcctgaagtttatccttcacaatgtcagacctaacagccacttgtccgattg |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2161428 |
gacatcacagagcacaatataaactcatgaacaaaacttgcaaattcatcctgaaatttatccttcacaatgttagacctaacagccacttgtccgattg |
2161329 |
T |
|
| Q |
109 |
cactgtggatgtatgcccactcatatactacattctcaagggcttcaaggttgacatagcccgcacattagcatgggagttaaggctggtcacccttcaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2161328 |
cactgtggatgtatgcccactcatatactacattctcaagggcttcaaggttgacatagcccgcacattagcatgggagttaaggctggtcacccttcaa |
2161229 |
T |
|
| Q |
209 |
ggaaaaagtgagccaaaaacc |
229 |
Q |
| |
|
||||||||||| ||||||||| |
|
|
| T |
2161228 |
ggaaaaagtgaaccaaaaacc |
2161208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 229
Target Start/End: Original strand, 8189287 - 8189507
Alignment:
| Q |
9 |
gacatcacagagcacaatataaactcatgaacaaaacttgcaaattcatcctgaagtttatccttcacaatgtcagacctaacagccacttgtccgattg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8189287 |
gacatcacagagcacaatataaactcatgaacaaaacttgcaaattcatcctaaagtttatccttcacaatgtcagacctaacagccacttgtccgattg |
8189386 |
T |
|
| Q |
109 |
cactgtggatgtatgcccactcatatactacattctcaagggcttcaaggttgacatagcccgcacattagcatgggagttaaggctggtcacccttcaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8189387 |
cactgtggatgtatgcccactcatatactacattctcaagggcttcaaggttgacatagcccgcacattagcatgggagttaaggctggtcacccttcaa |
8189486 |
T |
|
| Q |
209 |
ggaaaaagtgagccaaaaacc |
229 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
8189487 |
ggaaaaagtgagccaaaaacc |
8189507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 15944882 - 15944671
Alignment:
| Q |
18 |
gagcacaatataaactcatgaacaaaacttgcaaattcatcctgaagtttatccttcacaatgtcagacctaacagccacttgtccgattgcactgtgga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
15944882 |
gagcacaatataaactcatgaacaaaacttgcaaattcatcctgaagtttatccttcacaatgtcaaacctaacagccacttgtctgattgcactgtgga |
15944783 |
T |
|
| Q |
118 |
tgtatgcccactcatatactacattctcaagggcttcaaggttgacatagcccgcacattagcatgggagttaaggctggtcacccttcaaggaaaaagt |
217 |
Q |
| |
|
|||||||||||| || |||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
15944782 |
tgtatgcccactaatctactacattctcaagggcatcaaggtcgacatagcccgcacaatagcatgggagttaaggctggtcacccttcaaggaaaaggt |
15944683 |
T |
|
| Q |
218 |
gagccaaaaacc |
229 |
Q |
| |
|
|||||||||||| |
|
|
| T |
15944682 |
gagccaaaaacc |
15944671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 58 - 229
Target Start/End: Complemental strand, 14291490 - 14291319
Alignment:
| Q |
58 |
cctgaagtttatccttcacaatgtcagacctaacagccacttgtccgattgcactgtggatgtatgcccactcatatactacattctcaagggcttcaag |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14291490 |
cctgaagtttatccttcacaatgtcagacctaacagccacttgtccgattgcactgtggatgtatgcccactcatatactacattctcaagggcttcaag |
14291391 |
T |
|
| Q |
158 |
gttgacatagcccgcacattagcatgggagttaaggctggtcacccttcaaggaaaaagtgagccaaaaacc |
229 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14291390 |
gttaacatagcccgcacattagcatgggagttaaggctggtcacccttcaaggaaaaagtgagccaaaaacc |
14291319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 50 - 229
Target Start/End: Complemental strand, 22855215 - 22855036
Alignment:
| Q |
50 |
aaattcatcctgaagtttatccttcacaatgtcagacctaacagccacttgtccgattgcactgtggatgtatgcccactcatatactacattctcaagg |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| | ||||||||||||||||| || |||||||||||||||| |
|
|
| T |
22855215 |
aaattcatcctgaagtttatccttcacaatgtcaaacccaacagccacttgtccgattgtatcgtggatgtatgcccactaatctactacattctcaagg |
22855116 |
T |
|
| Q |
150 |
gcttcaaggttgacatagcccgcacattagcatgggagttaaggctggtcacccttcaaggaaaaagtgagccaaaaacc |
229 |
Q |
| |
|
|| |||| || |||||||||| ||| | || ||||| || | ||| ||||| |||||||||||| |||| ||||||||| |
|
|
| T |
22855115 |
gcatcaaagtcgacatagcccacactattgcttgggaattgaagcttgtcacacttcaaggaaaaggtgaaccaaaaacc |
22855036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 229
Target Start/End: Original strand, 9573373 - 9573593
Alignment:
| Q |
9 |
gacatcacagagcacaatataaactcatgaacaaaacttgcaaattcatcctgaagtttatccttcacaatgtcagacctaacagccacttgtccgattg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9573373 |
gacatcacagagcacaatataaactcatgaacaaaacttgcaaattcatcctaaagtttatccttcacaatgtcagacctaacagccacttgtccgattg |
9573472 |
T |
|
| Q |
109 |
cactgtggatgtatgcccactcatatactacattctcaagggcttcaaggttgacatagcccgcacattagcatgggagttaaggctggtcacccttcaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9573473 |
cactgtggatgtatgcccactcatatactacattctcaagggcttcaaggttgacatagcccgcacattagcatgggagttaaggctggtcacccttcaa |
9573572 |
T |
|
| Q |
209 |
ggaaaaagtgagccaaaaacc |
229 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
9573573 |
ggaaaaagtgagccaaaaacc |
9573593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 9 - 229
Target Start/End: Complemental strand, 45019611 - 45019391
Alignment:
| Q |
9 |
gacatcacagagcacaatataaactcatgaacaaaacttgcaaattcatcctgaagtttatccttcacaatgtcagacctaacagccacttgtccgattg |
108 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45019611 |
gacaacacagagcacaatataaactcatgaacaaaacttgcaaattcatcctgaaatttatccttcacaatgtcagacctaacagccacttgtccgattg |
45019512 |
T |
|
| Q |
109 |
cactgtggatgtatgcccactcatatactacattctcaagggcttcaaggttgacatagcccgcacattagcatgggagttaaggctggtcacccttcaa |
208 |
Q |
| |
|
||| ||||||||||||||||| || || ||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
45019511 |
caccgtggatgtatgcccactaatctattacattctcaagggcatcaaggttgacatagcccgcacaatagcatgggaattaaggctggtcacccttcaa |
45019412 |
T |
|
| Q |
209 |
ggaaaaagtgagccaaaaacc |
229 |
Q |
| |
|
||||||||||||||| ||||| |
|
|
| T |
45019411 |
ggaaaaagtgagccacaaacc |
45019391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 26 - 229
Target Start/End: Original strand, 5534 - 5737
Alignment:
| Q |
26 |
tataaactcatgaacaaaacttgcaaattcatcctgaagtttatccttcacaatgtcagacctaacagccacttgtccgattgcactgtggatgtatgcc |
125 |
Q |
| |
|
|||||| | |||||||| || | ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| || ||||||||||||| |
|
|
| T |
5534 |
tataaatttatgaacaacacctccaaattcatcctgaagtttatccttcacaatgtcaaacccaacagccacttgtccgattgtaccgtggatgtatgcc |
5633 |
T |
|
| Q |
126 |
cactcatatactacattctcaagggcttcaaggttgacatagcccgcacattagcatgggagttaaggctggtcacccttcaaggaaaaagtgagccaaa |
225 |
Q |
| |
|
|| | || |||||||||||||||||| |||| || |||||||||| ||| | || ||||| || | | |||||| |||||||||||| | || ||||| |
|
|
| T |
5634 |
cattaatctactacattctcaagggcatcaaagtcgacatagcccacactattgcttgggaattgaagttggtcagacttcaaggaaaaggcgaaccaaa |
5733 |
T |
|
| Q |
226 |
aacc |
229 |
Q |
| |
|
|||| |
|
|
| T |
5734 |
aacc |
5737 |
T |
|
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