View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6978_high_48 (Length: 223)
Name: NF6978_high_48
Description: NF6978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6978_high_48 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 14 - 205
Target Start/End: Complemental strand, 33236420 - 33236229
Alignment:
| Q |
14 |
cagagacaaagacagaacaatgtcctgccaaacacggaatgtacatatagccacttacaaaggataaaactaggtcaatggtggaaaatatgcaaaaata |
113 |
Q |
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| T |
33236420 |
cagagacaaagacagaacaatgtcctgccaaacacggaatgtacatatagccacttacaaaggataaaactaggtcaatggtggaaaatatgcaaaaata |
33236321 |
T |
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| Q |
114 |
acactattaactccctatacactgccaagtgtgttccatttcaaccaccctaacaatcaatcatcatcatataatagtatatatgcaaaacc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33236320 |
acactattaactccctatacactgccaagtgtgttccatttcaaccaccctaacaatcaatcatcatcatataatagtatatatgcaaaacc |
33236229 |
T |
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