View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6978_high_6 (Length: 625)
Name: NF6978_high_6
Description: NF6978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6978_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 227 - 609
Target Start/End: Original strand, 39399112 - 39399488
Alignment:
| Q |
227 |
ctaacattatatatattaatattacgaggaggacgcgatttagaactcaaaattttggcccaacataaatagatagaaaagtgagtgaggcagtttattg |
326 |
Q |
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| T |
39399112 |
ctaacattatatatattaatattacgaggaggacgcgatttagaactcaaaattttggcccaacataaagagatagaaaagtgagtgaggcagtttattg |
39399211 |
T |
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| Q |
327 |
caaaagattaggtcaagaatggagaaggagaaagaggtgatggaggatcgccgccgacaccgacgcccggttatggttgtgaaggtaagtcaagaacatg |
426 |
Q |
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| T |
39399212 |
caaaagattaggtcaaaaatggagaaggagaaagaggtgatggaggatcgccgacgac------gcccggttatggttgtgaaggtaagtcaagaacatg |
39399305 |
T |
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| Q |
427 |
tttgtcatctgcgtactttctttgatgtggagcaaatcatcgttatgaactgttttgaaccccttagcggtgttaagcgaatcgaacgcaacgatcaagg |
526 |
Q |
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| T |
39399306 |
tttgtcatctgcgtactttctttgatgtggagcaaatcatcgttatgaactgttttgaaccccttagcggtgttaagcgaatcgaacgcaacgatcaagg |
39399405 |
T |
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| Q |
527 |
ttttactttctatttcaacagtttagatcatgcttcgtgtcttgtggaatatataagggacatagttccctctaagattcatt |
609 |
Q |
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| T |
39399406 |
ttttactttctatttcaacagtttagatcatgcttcgtgtcttgtggaatatataagggacatagttccctctaagattcatt |
39399488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 7 - 142
Target Start/End: Original strand, 39398886 - 39399021
Alignment:
| Q |
7 |
atggacatcacgaagataaaagacgttatcaactttccaacaacaatggagatgcaagggatcccgttcttaagcttgtttctgtttttagaaagtagaa |
106 |
Q |
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| T |
39398886 |
atggaaatcacgaagataaaagacgttatcaactttccaacaacaatggagatgcaagggatcccgttcttaagcttctttctgtttttagaaagtagta |
39398985 |
T |
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| Q |
107 |
aggtgggccaagaataaagtgtaaaattcaactaac |
142 |
Q |
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| T |
39398986 |
aggtgggccaagaataaagtgtaaaattcaactaac |
39399021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 476
Target Start/End: Original strand, 39879189 - 39879263
Alignment:
| Q |
402 |
gttgtgaaggtaagtcaagaacatgtttgtcatctgcgtactttctttgatgtggagcaaatcatcgttatgaac |
476 |
Q |
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| T |
39879189 |
gttgtgaatgttcgtcaacaacatgtttgtcagctgcgtactttctttcatttggagcagatcagcgttttgaac |
39879263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 476
Target Start/End: Original strand, 40411894 - 40411968
Alignment:
| Q |
402 |
gttgtgaaggtaagtcaagaacatgtttgtcatctgcgtactttctttgatgtggagcaaatcatcgttatgaac |
476 |
Q |
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| T |
40411894 |
gttgtgaatgttcgtcaacaacatgtttgtcagctgcgtactttctttcatttggagcagatcagcgttttgaac |
40411968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 415 - 471
Target Start/End: Complemental strand, 25913000 - 25912944
Alignment:
| Q |
415 |
gtcaagaacatgtttgtcatctgcgtactttctttgatgtggagcaaatcatcgtta |
471 |
Q |
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| T |
25913000 |
gtcaacaacatgtttgtcaactgcgtactttctttcatttggagcagatcagcgtta |
25912944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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