View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6978_low_1 (Length: 1223)

Name: NF6978_low_1
Description: NF6978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6978_low_1
NF6978_low_1
[»] chr7 (26 HSPs)
chr7 (28-1205)||(36463846-36465019)
chr7 (394-805)||(8414489-8414886)
chr7 (394-805)||(3934742-3935139)
chr7 (395-801)||(3932507-3932899)
chr7 (395-724)||(19788938-19789272)
chr7 (397-724)||(19786632-19786964)
chr7 (395-765)||(8733495-8733850)
chr7 (395-800)||(3051993-3052387)
chr7 (393-593)||(8731174-8731359)
chr7 (517-765)||(42678669-42678934)
chr7 (395-481)||(18395411-18395497)
chr7 (395-481)||(42678571-42678657)
chr7 (395-481)||(16496953-16497039)
chr7 (395-481)||(16535135-16535221)
chr7 (395-481)||(16630441-16630527)
chr7 (483-593)||(28610315-28610424)
chr7 (679-805)||(16497078-16497204)
chr7 (679-802)||(16535260-16535383)
chr7 (679-802)||(16630279-16630402)
chr7 (392-481)||(21769066-21769155)
chr7 (737-805)||(16535288-16535356)
chr7 (737-805)||(16630306-16630374)
chr7 (519-571)||(18395336-18395388)
chr7 (397-641)||(19093846-19094092)
chr7 (395-449)||(42680808-42680862)
chr7 (737-805)||(3932533-3932601)
[»] chr8 (8 HSPs)
chr8 (395-805)||(21268120-21268525)
chr8 (395-805)||(36379465-36379863)
chr8 (394-805)||(36377180-36377578)
chr8 (395-765)||(4876820-4877176)
chr8 (395-765)||(4879148-4879504)
chr8 (393-765)||(24519151-24519510)
chr8 (697-801)||(21268447-21268551)
chr8 (742-805)||(4879138-4879201)
[»] chr1 (13 HSPs)
chr1 (395-805)||(29833076-29833471)
chr1 (395-805)||(734579-734974)
chr1 (395-805)||(2403835-2404223)
chr1 (395-765)||(8933549-8933913)
chr1 (395-593)||(10909108-10909292)
chr1 (394-593)||(10911352-10911536)
chr1 (395-593)||(13011698-13011881)
chr1 (516-613)||(29833852-29833949)
chr1 (395-481)||(29833960-29834046)
chr1 (671-801)||(2416660-2416791)
chr1 (395-596)||(2409957-2410136)
chr1 (511-670)||(18353733-18353894)
chr1 (683-754)||(419213-419284)
[»] chr4 (14 HSPs)
chr4 (395-801)||(45161971-45162364)
chr4 (397-805)||(45166859-45167254)
chr4 (394-765)||(42468438-42468795)
chr4 (395-765)||(42470768-42471124)
chr4 (516-733)||(50855868-50856085)
chr4 (395-666)||(19429076-19429334)
chr4 (395-593)||(13774151-13774336)
chr4 (519-721)||(8739264-8739467)
chr4 (398-593)||(13776449-13776630)
chr4 (395-481)||(50855771-50855857)
chr4 (531-657)||(43179575-43179710)
chr4 (518-652)||(24908156-24908298)
chr4 (742-805)||(42468742-42468805)
chr4 (395-456)||(8739501-8739562)
[»] chr2 (16 HSPs)
chr2 (395-805)||(31486671-31487069)
chr2 (393-805)||(31488955-31489355)
chr2 (506-793)||(29801774-29802067)
chr2 (395-593)||(42275556-42275739)
chr2 (395-593)||(42277782-42277965)
chr2 (394-803)||(23859767-23860188)
chr2 (513-765)||(34576694-34576969)
chr2 (395-481)||(5164151-5164237)
chr2 (401-481)||(8995076-8995156)
chr2 (401-481)||(15730013-15730093)
chr2 (395-457)||(39816089-39816151)
chr2 (403-456)||(34576612-34576665)
chr2 (694-805)||(15729871-15729981)
chr2 (517-558)||(8995169-8995210)
chr2 (729-805)||(34576903-34576979)
chr2 (729-796)||(29801802-29801869)
[»] chr5 (19 HSPs)
chr5 (395-805)||(11852175-11852561)
chr5 (517-805)||(37207660-37207948)
chr5 (516-805)||(23164347-23164636)
chr5 (516-805)||(22600700-22600989)
chr5 (516-805)||(11850014-11850303)
chr5 (517-660)||(37215396-37215539)
chr5 (517-765)||(1779316-1779581)
chr5 (394-481)||(11849916-11850003)
chr5 (395-481)||(23164254-23164340)
chr5 (394-481)||(22601000-22601088)
chr5 (395-481)||(37215551-37215638)
chr5 (395-481)||(1779222-1779303)
chr5 (554-805)||(1779587-1779855)
chr5 (395-473)||(21743719-21743797)
chr5 (395-466)||(37207998-37208070)
chr5 (506-593)||(21743622-21743709)
chr5 (395-456)||(15469197-15469258)
chr5 (519-559)||(1779181-1779221)
chr5 (698-765)||(37207640-37207707)
[»] scaffold0599 (1 HSPs)
scaffold0599 (395-630)||(1579-1801)
[»] chr3 (6 HSPs)
chr3 (395-593)||(4530835-4531020)
chr3 (394-587)||(4533138-4533318)
chr3 (519-801)||(18966221-18966518)
chr3 (593-668)||(1701104-1701179)
chr3 (594-650)||(8535522-8535578)
chr3 (729-801)||(39578235-39578307)
[»] scaffold0050 (6 HSPs)
scaffold0050 (506-672)||(29261-29426)
scaffold0050 (506-672)||(31574-31741)
scaffold0050 (395-456)||(29453-29514)
scaffold0050 (395-456)||(31768-31829)
scaffold0050 (718-806)||(31439-31527)
scaffold0050 (718-805)||(29122-29209)
[»] scaffold0008 (2 HSPs)
scaffold0008 (395-481)||(88445-88531)
scaffold0008 (717-801)||(73069-73153)
[»] scaffold1361 (1 HSPs)
scaffold1361 (395-481)||(53-140)
[»] scaffold0098 (1 HSPs)
scaffold0098 (395-473)||(3707-3785)
[»] chr6 (2 HSPs)
chr6 (527-733)||(21199149-21199374)
chr6 (397-456)||(20642300-20642359)
[»] scaffold0312 (1 HSPs)
scaffold0312 (683-754)||(11287-11358)
[»] scaffold0045 (2 HSPs)
scaffold0045 (392-456)||(64082-64144)
scaffold0045 (392-456)||(71414-71476)


Alignment Details
Target: chr7 (Bit Score: 1100; Significance: 0; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 1100; E-Value: 0
Query Start/End: Original strand, 28 - 1205
Target Start/End: Original strand, 36463846 - 36465019
Alignment:
Q  28 gactttacataagagctcgtaaaattgtgggagaacttgaagtcactattaacatgattccaagcttggaacaacttgtttatgaagtcatcatgtctat 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36463846 gactttacataagagctcgtaaaattgtgggagaacttgaagtcactattaacatgattccaagcttggaaaaacttgtttatgaagtcatcatgtctat 36463945  T
Q  128 gttaaaggagtttagagacagggaaagaaacctatgatccttatgtttgaggttgtgtttatgttcacaagataaccaatcaaaaactccaatggaatcg 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36463946 gttaaaggagtttagagacagggaaagaaacctatgatccttatgtttgaggttgtgtttatgttcacaagataaccaatcaaaaactccaatggaatcg 36464045  T
Q  228 tagtcacttaccaaaataaaattcattattaagctatggaagtatggaagtaaatcatgcgaatccaagtcataaaacatcgtatacacgttctgtgtgt 327  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36464046 tagtcaccttccaaaataaaattcattattaagctatggaagtatggaagtaaatcatgcgaatccaagtcataaaacatcgtatacacgttctgtgtgt 36464145  T
Q  328 ctggtttggattccnnnnnnncaagtatcatcctaatgtagcacaaagcatttttcgaggaatcatttggctcagggacaaaaggaaaggtagagaaaat 427  Q
    ||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36464146 ctggtttggattccaaaaaaacaagtatcatcctaatgtagcacaaagcatttttcgaggaatcgtttggctcagggacaaaaggaaaggtagagaaaat 36464245  T
Q  428 tgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgactatgcttgagtatcttgagtatgccaaaacactag 527  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||    
T  36464246 tgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat----gcttgactatgcttgagtatcttgagtatgccaaaacactag 36464341  T
Q  528 gtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtctagagatatggatactctagtaca 627  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36464342 gtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtctggagatatggatactctagtaca 36464441  T
Q  628 taaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatccttattattccctagtattctagagacttctat 727  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36464442 taaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattctagagacttctat 36464541  T
Q  728 tttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattatttttcatcattcttcttcatcatcgttgcttttat 827  Q
     |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36464542 attattatttagtgttctagagacttccacattattctctagtattctagagtcttccatattatttttcatcattcttcttcatcatcgttgcttttat 36464641  T
Q  828 tattcctgcttttgacggtatagtttcatggaagggagaggggtctcattcattttggagaaccagacctgagcattacgtactcatcaggtttttgata 927  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  36464642 tattcctgcttttgacggtatagtttcatggaagggagaggggtctcattcattttggagcaccagacctgagcattacgtactcatcaggtttttgata 36464741  T
Q  928 taggcgacaacgtttttaaacttccttttaggttcgcttagctaattctgttgattttaagattgttgataaggaagcacaagtagataggttcctctca 1027  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36464742 taggcgacaacgtttttaaacttccttttaggttcgcttagctaattctgttgattttaagattgttgataaggaagcacaagtagataggttcctctca 36464841  T
Q  1028 agagaatatggtcattttcattgggtatttgattgtgtgaatgaatgattaatttttccaacaaaagcttatatggtgggaagggaaggtaacttctaat 1127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36464842 agagaatatggtcattttcattgggtatttgattgtgtgaatgaatgattaatttttccaacaaaagcttatatggtgggaagggaaggtaacttctaat 36464941  T
Q  1128 tctcttgtgttagtgaacttccttatctatgttgaaatcgctataacccttatctatgtagacattgtaagtaatgat 1205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36464942 tctcttgtgttagtgaacttccttatctatgttgaaatcgctataacccttatctatgtagacattgtaagtaatgat 36465019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 394 - 805
Target Start/End: Original strand, 8414489 - 8414886
Alignment:
Q  394 ttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgact 493  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||    |||||| |    
T  8414489 ttggctcagggacaaaaggaaaggtagagaaaatagaaaaacactctaatattctcaaagaaaagttatattatttgaatgattcaat----gcttgaat 8414584  T
Q  494 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 593  Q
    ||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  8414585 atgcttgagtat---------gccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaaaatctagaaaca 8414675  T
Q  594 aagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcat 693  Q
    |||||||||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  8414676 aagaaaagtctagagatatggatattttagtatataaaactagaag-atctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagttt 8414774  T
Q  694 ccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattatt 793  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||    
T  8414775 ccttattattccctagtattctagagacttctatattattctttagtgttctagatacttccacattattctctagtattctagagtcttccatattatt 8414874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 394 - 805
Target Start/End: Complemental strand, 3935139 - 3934742
Alignment:
Q  394 ttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgact 493  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||| |    
T  3935139 ttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat----gcttgatt 3935044  T
Q  494 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 593  Q
    |||||||||||||          ||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  3935043 atgcttgagtatc----------caaaacactagatggtgagccttatttatactattctaggaaggctctccattacaaactagaaatatctagaaaca 3934954  T
Q  594 aagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcat 693  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |    
T  3934953 aagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagctt 3934854  T
Q  694 ccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattatt 793  Q
    |||||||||||||||||||||||||| |||| || ||||| |||||| ||||||||||||||| ||||||||     ||||||||| |||||||||||||    
T  3934853 ccttattattccctagtattctagagtcttccatattattctttagtcttctagagacttccatattattcttcatcattctagagacttccatattatt 3934754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 395 - 801
Target Start/End: Complemental strand, 3932899 - 3932507
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 494  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||| ||    
T  3932899 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat----gcttgatta 3932804  T
Q  495 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaa 594  Q
    ||||||||||||          ||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  3932803 tgcttgagtatc----------caaaacactagatggtgagccttatttatactattctaggaaggctctccattacaaactagaaatatctagaaacaa 3932714  T
Q  595 agaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatc 694  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||    
T  3932713 agaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttc 3932614  T
Q  695 cttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattattt 794  Q
    ||||||||||||||||||||||||| |||| || ||||| |||||| ||||||||||||||| ||||||||     ||||||||| |||||||||||||     
T  3932613 cttattattccctagtattctagagtcttccatattattctttagtcttctagagacttccatattattcttcatcattctagagacttccatattattc 3932514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 395 - 724
Target Start/End: Complemental strand, 19789272 - 19788938
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaag-aaaagttatattacttgaatgattcaattaatg-----ct 488  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||   ||     ||    
T  19789272 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaatgcttgattatct 19789173  T
Q  489 tgactatgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctag 588  Q
    ||| ||| ||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  19789172 tgagtat-cttgaatgtcttgaatatgccaaaacactaggtggtgagccttatttatactactctagtaaggctctccattacaaactagaaatatctag 19789074  T
Q  589 aaacaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagt 688  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19789073 aaacaaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagt 19788974  T
Q  689 agcatccttattattccctagtattctagagacttc 724  Q
    ||| ||||||||||||||||||||||||||||||||    
T  19788973 agcttccttattattccctagtattctagagacttc 19788938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 397 - 724
Target Start/End: Complemental strand, 19786964 - 19786632
Alignment:
Q  397 gctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaag-aaaagttatattacttgaatgattcaattaatg-----cttg 490  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||   ||     ||||    
T  19786964 gctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaatgcttgattatcttg 19786865  T
Q  491 actatgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaa 590  Q
    | ||| ||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19786864 agtat-cttgaatgtcttgaatatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaa 19786766  T
Q  591 acaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtag 690  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  19786765 acaaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtag 19786666  T
Q  691 catccttattattccctagtattctagagacttc 724  Q
    | |||||||||||||||| |||||||||||||||    
T  19786665 cttccttattattccctaatattctagagacttc 19786632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 395 - 765
Target Start/End: Original strand, 8733495 - 8733850
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaag-ttatattacttgaatgattcaattaatgcttgact 493  Q
    |||||||||||||||||  |||||||||||||| ||||||| |||||||||||||||||||||| |||||||| ||||||| ||||||    ||||||      
T  8733495 tggctcagggacaaaagagaaggtagagaaaatagagaaactctctaatattctcaaagaaaagattatattatttgaatgcttcaat----gcttgatg 8733590  T
Q  494 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 593  Q
    ||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  8733591 at---------tcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctcctttacaaactagaaatatctagaaaca 8733681  T
Q  594 aagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcat 693  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||   ||||||||||||||||||||||||||||||| |    
T  8733682 aagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaaga---ccctagtgcttatttagtagtgtctagtagctt 8733778  T
Q  694 ccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 765  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||    
T  8733779 ccttattattccctagtattctagagacttctatattattctttagtgttctagagacttccatattattct 8733850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 395 - 800
Target Start/End: Complemental strand, 3052387 - 3051993
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 494  Q
    ||||| |||||||||||||| ||||||||||||  ||||||  |||| ||||||||||||||  |||||||| ||||||| ||||||    |||||| ||    
T  3052387 tggctgagggacaaaaggaatggtagagaaaataaagaaac--tctattattctcaaagaaagtttatattatttgaatgcttcaat----gcttgagta 3052294  T
Q  495 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaa 594  Q
    | ||||||||| |         |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3052293 tacttgagtatat---------caaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaa 3052203  T
Q  595 agaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatc 694  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||    
T  3052202 agaaaagtctagagatatggatattctagtacataaaactagaaggatctagaaaagttaagacttccctaatgcttatttagtagtgtctagtagcttc 3052103  T
Q  695 cttattattcc----ctagtattctagagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatatt 790  Q
    |||||||||      |||||||||||||||||||||| ||||| ||||||||| |||||||||| ||||||||||||  |||||||||||||||||||||    
T  3052102 cttattatttattatctagtattctagagacttctatattattctttagtgttatagagacttcgacattattctctagtattctagagtcttccatatt 3052003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 393 - 593
Target Start/End: Original strand, 8731174 - 8731359
Alignment:
Q  393 tttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgac 492  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||     
T  8731174 tttggctcagggacaaaaggaaaggtagataaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattc----aatgcttgat 8731269  T
Q  493 tatgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaac 592  Q
    | |           || | | |||| |||||||  ||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||    
T  8731270 tct-----------ttaaatgtgcctaaacacttagtggtgagccttatttatactactctaggaaggctctacattacaaattagaaatatctagaaac 8731358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 517 - 765
Target Start/End: Original strand, 42678669 - 42678934
Alignment:
Q  517 caaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca---------aagaaaagtctaga 607  Q
    ||||||||| ||||||||||||||||||||||||  | |||||| ||| ||||| ||||||||| ||||||||||||         |||||| | |||||    
T  42678669 caaaacacttggtggtgagccttatttatactaccttgggaaggttctacattacaaactagaattatctagaaacattgattacaaagaaaggcctaga 42678768  T
Q  608 gatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgctt------atttagtag--tgtctagtagcatccttat 699  Q
     | |||||||||||||  ||||  ||||||||||||||||||  | |||| || ||||||||||      |||||||||  ||||||||||| |||||||    
T  42678769 aacatggatactctaggtcatatgactagaaggatctagaaacattaagattttcctagtgctttattttatttagtagagtgtctagtagcttccttat 42678868  T
Q  700 tattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 765  Q
    |||||| ||||||| |||||||||| || ||||| |||||| ||||||| ||||||| ||||||||    
T  42678869 tattccatagtattttagagacttccatattattctttagttttctagaaacttccatattattct 42678934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 79; E-Value: 3e-36
Query Start/End: Original strand, 395 - 481
Target Start/End: Complemental strand, 18395497 - 18395411
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 481  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18395497 tggcttagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 18395411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 79; E-Value: 3e-36
Query Start/End: Original strand, 395 - 481
Target Start/End: Original strand, 42678571 - 42678657
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 481  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42678571 tggctcagggacaaaaggaaaggtagagaaaataaagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 42678657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 395 - 481
Target Start/End: Original strand, 16496953 - 16497039
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 481  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16496953 tggctcagggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttaaatgattcaat 16497039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 71; E-Value: 2e-31
Query Start/End: Original strand, 395 - 481
Target Start/End: Original strand, 16535135 - 16535221
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 481  Q
    |||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16535135 tggctcggggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttaaatgattcaat 16535221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 71; E-Value: 2e-31
Query Start/End: Original strand, 395 - 481
Target Start/End: Complemental strand, 16630527 - 16630441
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 481  Q
    |||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16630527 tggctcggggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttaaatgattcaat 16630441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 67; E-Value: 4e-29
Query Start/End: Original strand, 483 - 593
Target Start/End: Original strand, 28610315 - 28610424
Alignment:
Q  483 aatgcttgactatgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaat 582  Q
    ||||||||| ||||||| ||||||| || | |||| ||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||    
T  28610315 aatgcttgagtatgcttcagtatct-gaatgtgcctaaacacttggtggtgagccttatttatactactctagaaaggctctacattacaaactagaaat 28610413  T
Q  583 atctagaaaca 593  Q
    |||||||||||    
T  28610414 atctagaaaca 28610424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 679 - 805
Target Start/End: Original strand, 16497078 - 16497204
Alignment:
Q  679 agtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctctgct-attctag 777  Q
    ||||||||||||| ||||||||||||| |||||||||||| ||||| |  ||||| |||| | |||||||| | |||| |||||||| || | |||||||    
T  16497078 agtgtctagtagcttccttattattccatagtattctagaaacttccacattattctttattattctagaggcatccatattattct-tgatcattctag 16497176  T
Q  778 agtcttccatattatttttcatcattct 805  Q
    || ||||||||||||| || ||||||||    
T  16497177 agacttccatattattcttgatcattct 16497204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 679 - 802
Target Start/End: Original strand, 16535260 - 16535383
Alignment:
Q  679 agtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctctgct-attctag 777  Q
    ||||||||||||| || |||||||||| |||||||||||||||||| |  ||||| |||| | |||||||| |||||| |||||||| || | ||||||     
T  16535260 agtgtctagtagcttctttattattccatagtattctagagacttccacattattctttattattctagaggcttccatattattct-tgatcattctat 16535358  T
Q  778 agtcttccatattatttttcatcat 802  Q
    || ||||||||||||| || |||||    
T  16535359 agacttccatattattcttgatcat 16535383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 679 - 802
Target Start/End: Complemental strand, 16630402 - 16630279
Alignment:
Q  679 agtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctctgct-attctag 777  Q
    ||||||||||||| || |||||||||| |||||||||||||||||| |  ||||| |||| | |||||||| |||||| |||||||| || | ||||||     
T  16630402 agtgtctagtagcttctttattattccatagtattctagagacttccacattattctttattattctagaggcttccatattattct-tgatcattctat 16630304  T
Q  778 agtcttccatattatttttcatcat 802  Q
    || ||||||||||||| || |||||    
T  16630303 agacttccatattattcttgatcat 16630279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 392 - 481
Target Start/End: Original strand, 21769066 - 21769155
Alignment:
Q  392 atttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 481  Q
    |||| |||||||||  |||||||||||||||||||| ||||||| || |||||||||||||||||  |  ||||| ||||||| ||||||    
T  21769066 attttgctcagggatgaaaggaaaggtagagaaaatagagaaactctttaatattctcaaagaaagttgttattatttgaatgtttcaat 21769155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 737 - 805
Target Start/End: Original strand, 16535288 - 16535356
Alignment:
Q  737 tagtgttctagagacttccacattattctctgctattctagagtcttccatattatttttcatcattct 805  Q
    |||| |||||||||||||||||||||||| |  |||||||||| ||||||||||||| || ||||||||    
T  16535288 tagtattctagagacttccacattattctttattattctagaggcttccatattattcttgatcattct 16535356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 737 - 805
Target Start/End: Complemental strand, 16630374 - 16630306
Alignment:
Q  737 tagtgttctagagacttccacattattctctgctattctagagtcttccatattatttttcatcattct 805  Q
    |||| |||||||||||||||||||||||| |  |||||||||| ||||||||||||| || ||||||||    
T  16630374 tagtattctagagacttccacattattctttattattctagaggcttccatattattcttgatcattct 16630306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 519 - 571
Target Start/End: Complemental strand, 18395388 - 18395336
Alignment:
Q  519 aaacactaggtggtgagccttatttatactactctaggaaggctctccattat 571  Q
    |||||||  ||||||||||||||||||||||||||||||||||||| ||||||    
T  18395388 aaacacttagtggtgagccttatttatactactctaggaaggctctacattat 18395336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 397 - 641
Target Start/End: Original strand, 19093846 - 19094092
Alignment:
Q  397 gctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgactatg 496  Q
    |||||||| |||||||| |||||||||||||  |||||| ||||||||||||||||||||  ||||||   ||  || |||   | |||| ||||  ||     
T  19093846 gctcagggtcaaaaggagaggtagagaaaat--agaaactctctaatattctcaaagaaagtttatat---ttatattatt---tgaatgtttga--att 19093935  T
Q  497 cttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaag----gctctccattataaactagaaatatctagaa-- 590  Q
     |||| || ||||||||||||  |||||| ||||| || |||||||||||||||||||| |||     |||| ||||| |||||||||||||||| ||      
T  19093936 tttgaata-cttgagtatgcctgaacacttggtggcgaaccttatttatactactctagaaagacgtactctacattacaaactagaaatatctaaaaat 19094034  T
Q  591 -------acaaagaaaagtctagagatatggatactctagtacataaaactagaagga 641  Q
           ||||||||||||||||||| ||||||||||||||  ||||  |||||||||    
T  19094035 atcgattacaaagaaaagtctagagacatggatactctagtttataagtctagaagga 19094092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 395 - 449
Target Start/End: Complemental strand, 42680862 - 42680808
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctc 449  Q
    ||||| ||| |||||| |||||||||||||||| |||||||||||||||||||||    
T  42680862 tggctgaggaacaaaatgaaaggtagagaaaatagagaaacactctaatattctc 42680808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 737 - 805
Target Start/End: Complemental strand, 3932601 - 3932533
Alignment:
Q  737 tagtgttctagagacttccacattattctctgctattctagagtcttccatattatttttcatcattct 805  Q
    |||| |||||||| |||||| |||||||| |  | |||||||| ||||||||||||| |||||||||||    
T  3932601 tagtattctagagtcttccatattattctttagtcttctagagacttccatattattcttcatcattct 3932533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 295; Significance: 1e-165; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 395 - 805
Target Start/End: Original strand, 21268120 - 21268525
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaag-aaaagttatattacttgaatgattcaattaatgcttgact 493  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||    |||||| |    
T  21268120 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaat----gcttgatt 21268215  T
Q  494 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 593  Q
    || ||||||||| | || |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  21268216 at-cttgagtatttggattatgcctaaacactaggtagtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaaca 21268314  T
Q  594 aagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcat 693  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |    
T  21268315 aagaaaagtctagagatatggatactttagtacataaaactagaaggatctagaaaagtcaagacttccctagt-tttatttagtagtgtctagtagctt 21268413  T
Q  694 ccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattatt 793  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  21268414 ccttattattccctagtattctagagacttctatattattctttagtgttctagagacttccacattattctctagtattctagagtcttccatattatt 21268513  T
Q  794 tttcatcattct 805  Q
     |||| ||||||    
T  21268514 cttcaccattct 21268525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 274; E-Value: 1e-152
Query Start/End: Original strand, 395 - 805
Target Start/End: Original strand, 36379465 - 36379863
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaag-aaaagttatattacttgaatgattcaattaatgcttgact 493  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||                
T  36379465 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaat------------ 36379552  T
Q  494 atgcttgagtatcttgagtatgccaaaacact-aggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaac 592  Q
      |||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  36379553 --gcttgattatcttgagtatgccaaaacacccaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctggaaac 36379650  T
Q  593 aaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagca 692  Q
    ||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  36379651 aaagaaaagtccagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagct 36379750  T
Q  693 tccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattat 792  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||| ||  |||||||||||||||||||||||    
T  36379751 tccttattattccctagtattctagagacttctatattattctttagtcttctagagacttccacattattccctagtattctagagtcttccatattat 36379850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 247; E-Value: 1e-136
Query Start/End: Original strand, 394 - 805
Target Start/End: Original strand, 36377180 - 36377578
Alignment:
Q  394 ttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaag-aaaagttatattacttgaatgattcaattaatgcttgac 492  Q
    |||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||               
T  36377180 ttggctcaaggacaaa-ggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaat----------- 36377267  T
Q  493 tatgcttgagtatcttgagtatgccaaaacact-aggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaa 591  Q
       |||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||  |||    
T  36377268 ---gcttgattattttgagtatgccaaaacacttaggtggtgagccttatttatactactctaggaaggctctccattacaaagtagaaatatctgaaaa 36377364  T
Q  592 caaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagc 691  Q
    |||||||||||  ||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  36377365 caaagaaaagttcagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagc 36377464  T
Q  692 atccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatatta 791  Q
     ||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||  |  ||||||||||||||||||||||    
T  36377465 ttccttattattccctagtattctagagacttctatattattctttagtcttctagagacttccacattattccttagtattctagagtcttccatatta 36377564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 232; E-Value: 1e-127
Query Start/End: Original strand, 395 - 765
Target Start/End: Complemental strand, 4877176 - 4876820
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 494  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||                 
T  4877176 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaggaaaagttatattacttgaatcattcaat------------- 4877090  T
Q  495 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaa 594  Q
     |||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4877089 -gcttgattatcttgagtatgtcaaaacactagatggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaa 4876991  T
Q  595 agaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatc 694  Q
    ||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||    
T  4876990 agaaaagtctagagatatggatactatagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtttctagtagcttc 4876891  T
Q  695 cttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 765  Q
    |||||||||||| |||||||||||| |||| || ||||| || |   ||||||||||||||| ||||||||    
T  4876890 cttattattccccagtattctagagtcttccatattattcttcaccattctagagacttccatattattct 4876820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 232; E-Value: 1e-127
Query Start/End: Original strand, 395 - 765
Target Start/End: Complemental strand, 4879504 - 4879148
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 494  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||                 
T  4879504 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaggaaaagttatattacttgaatcattcaat------------- 4879418  T
Q  495 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaa 594  Q
     |||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4879417 -gcttgattatcttgagtatgtcaaaacactagatggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaa 4879319  T
Q  595 agaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatc 694  Q
    ||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||    
T  4879318 agaaaagtctagagatatggatactatagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtttctagtagcttc 4879219  T
Q  695 cttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 765  Q
    |||||||||||| |||||||||||| |||| || ||||| || |   ||||||||||||||| ||||||||    
T  4879218 cttattattccccagtattctagagtcttccatattattcttcaccattctagagacttccatattattct 4879148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 232; E-Value: 1e-127
Query Start/End: Original strand, 393 - 765
Target Start/End: Original strand, 24519151 - 24519510
Alignment:
Q  393 tttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgac 492  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    ||||||     
T  24519151 tttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttgaatgattcaat----gcttgat 24519246  T
Q  493 tatgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaac 592  Q
    ||||||| ||||         |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24519247 tatgcttcagta---------tgccaaaacactagatggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaac 24519337  T
Q  593 aaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagca 692  Q
    ||||||||||||||||||||||||||| | ||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||     
T  24519338 aaagaaaagtctagagatatggatacttttgtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctggtagct 24519437  T
Q  693 tccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 765  Q
    |||||||||||||| |||||||||||| |||| || ||||| || |   ||||||||||||||| ||||||||    
T  24519438 tccttattattccccagtattctagagtcttccatattattcttcaccattctagagacttccatattattct 24519510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 697 - 801
Target Start/End: Original strand, 21268447 - 21268551
Alignment:
Q  697 tattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattattttt 796  Q
    ||||||||  |||| ||||||||||||| |  ||||| | |||| |||||||| |||||| ||||||||   | ||||||||| ||||||||||||| ||    
T  21268447 tattattctttagtgttctagagacttccacattattctctagtattctagagtcttccatattattcttcaccattctagagacttccatattattctt 21268546  T
Q  797 catca 801  Q
    |||||    
T  21268547 catca 21268551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 742 - 805
Target Start/End: Complemental strand, 4879201 - 4879138
Alignment:
Q  742 ttctagagacttccacattattctctgctattctagagtcttccatattatttttcatcattct 805  Q
    |||||||| |||||| ||||||||   | ||||||||| ||||||||||||| |||||||||||    
T  4879201 ttctagagtcttccatattattcttcaccattctagagacttccatattattcttcatcattct 4879138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 395 - 805
Target Start/End: Original strand, 29833076 - 29833471
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 494  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||                 
T  29833076 tggctcagggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat------------- 29833162  T
Q  495 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaa 594  Q
     ||||||  || |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29833163 -gcttgatgat-ttgaatgtgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaa 29833260  T
Q  595 agaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatc 694  Q
    ||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||    
T  29833261 agaaaagtctagagacatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttc 29833360  T
Q  695 cttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattattt 794  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||     
T  29833361 cttattattccctagtattctagagacttctatattattctttagtgttctagagacttccacattattctctagtattctagagtcttccatattattc 29833460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 274; E-Value: 1e-152
Query Start/End: Original strand, 395 - 805
Target Start/End: Original strand, 734579 - 734974
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 494  Q
    ||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||| ||||||||||||||||||||| |||||||                 
T  734579 tggctcagggacaaaaggaaaggtagagaaaatagagaaacact--aatattctcaaggaaaagttatattacttgaatcattcaat------------- 734663  T
Q  495 tgcttgagtatcttgagtatg-ccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 593  Q
     |||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  734664 -gcttgattatcttgagtatgaccaaaacactaggtggtgagccttatttatactattctaggaaggctctccattacaaactagaaatatctagaaaca 734762  T
Q  594 aagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcat 693  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |    
T  734763 aagaaaagtctagagatatggatactctagtacataaacctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagctt 734862  T
Q  694 ccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattatt 793  Q
    |||| ||||||||||||||||||||||||||||| ||||| |||||| ||||| ||||||||||||||||| ||  ||||||||||||||||||||||||    
T  734863 ccttgttattccctagtattctagagacttctatattattctttagtcttctaaagacttccacattattccctagtattctagagtcttccatattatt 734962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 395 - 805
Target Start/End: Original strand, 2403835 - 2404223
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaag-ttatattacttgaatgattcaattaatgcttgact 493  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||  |||||||| ||||||| |||              |    
T  2403835 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttc--------------t 2403920  T
Q  494 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 593  Q
    ||||||||      |||   ||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  2403921 atgcttga------tga---tgccaaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaaca 2404011  T
Q  594 aagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcat 693  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |    
T  2404012 aagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagctt 2404111  T
Q  694 ccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattatt 793  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||| ||||||||||||||||  ||| ||||||||||| || |||||    
T  2404112 ccttattattccctagtattctagagacttctatattattctttagtcttctagagatttccacattattctctagtatcctagagtcttctattttatt 2404211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 395 - 765
Target Start/End: Original strand, 8933549 - 8933913
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 494  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    ||||||||| |     
T  8933549 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatattttcaaagaaaagttatattacttgaatgattc----aatgcttgatt- 8933643  T
Q  495 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaa---- 590  Q
               ||||       |||||||||  ||||||||||||||||||||||||||||||||| ||| ||||| ||||||||| |||||||||        
T  8933644 -----------cttg-------caaaacacttagtggtgagccttatttatactactctaggaaggttctacattacaaactagaattatctagaaacat 8933725  T
Q  591 -----acaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgc------ttatttagt- 678  Q
         ||||||||| | ||||| | |||||||||||||| ||||  ||||||||||||||||||  | |||| || ||||||||      |||||||||     
T  8933726 tgattacaaagaaaggcctagaaacatggatactctagttcatatgactagaaggatctagaaacattaagattttcctagtgctttattttatttagta 8933825  T
Q  679 -agtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 765  Q
     |||||||| |||| ||||||||||||| ||||||| |||||||||| || || || |||||| || |||| | ||||| ||||||||    
T  8933826 gagtgtctaatagcttccttattattccatagtattttagagacttccatatttttctttagttttttagaaatttccatattattct 8933913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 97; E-Value: 5e-47
Query Start/End: Original strand, 395 - 593
Target Start/End: Complemental strand, 10909292 - 10909108
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaa-gaaaagttatattacttgaatgattcaattaatgcttgact 493  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    ||||||||| |    
T  10909292 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaacgaaaagttatattacttgaatgattc----aatgcttgatt 10909197  T
Q  494 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 593  Q
     |           |||| | |||| |||||||  ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  10909196 ct-----------ttgaatgtgcctaaacacttagtggtgagccttatttatactactctaggaaggctctacattacaaactagaaatatctagaaaca 10909108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 97; E-Value: 5e-47
Query Start/End: Original strand, 394 - 593
Target Start/End: Complemental strand, 10911536 - 10911352
Alignment:
Q  394 ttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgact 493  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||| |    
T  10911536 ttggctcagggacaaaaggaaaggtagataaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattc----aatgcttgatt 10911441  T
Q  494 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 593  Q
     |           |||| | |||| |||||||  ||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||    
T  10911440 ct-----------ttgaatgtgcctaaacacttagtggtgagccttatttatactactctaggaagggtctacattacaaactagaaatatctagaaaca 10911352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 395 - 593
Target Start/End: Complemental strand, 13011881 - 13011698
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 494  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    ||||||||| |     
T  13011881 tggctcaggaacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattatttgaatgattc----aatgcttgattc 13011786  T
Q  495 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 593  Q
    |           |||| | || | |||||||  ||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||    
T  13011785 t-----------ttgaatgtgtctaaacacttagtggtgagccttatttatactactctaggaaggctctacattaaaaactaaaaatatctagaaaca 13011698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 516 - 613
Target Start/End: Complemental strand, 29833949 - 29833852
Alignment:
Q  516 ccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtctagagatatg 613  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  29833949 ccaaaacactaggtagtgagccttatttatactactctaggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagatatg 29833852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 79; E-Value: 3e-36
Query Start/End: Original strand, 395 - 481
Target Start/End: Complemental strand, 29834046 - 29833960
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 481  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  29834046 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaaggattcaat 29833960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 76; E-Value: 2e-34
Query Start/End: Original strand, 671 - 801
Target Start/End: Original strand, 2416660 - 2416791
Alignment:
Q  671 tatttagtagtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttct-agagacttccacattattctctgc 769  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||| ||||| | |||| |||| |||||||||||||||||||||||     
T  2416660 tatttagtagtatctagtagcttccttattattccctagtattctagagagttctatattattctgtagtcttctgagagacttccacattattctctgg 2416759  T
Q  770 tattctagagtcttccatattatttttcatca 801  Q
    ||| ||||||||||| || ||||| |||||||    
T  2416760 tatcctagagtcttctattttattcttcatca 2416791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 395 - 596
Target Start/End: Original strand, 2409957 - 2410136
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaag-ttatattacttgaatgattcaattaatgcttgact 493  Q
    ||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||  |||||||| ||||||| |||              |    
T  2409957 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctataatattctcaaagaaaatattatattatttgaatgtttc--------------t 2410042  T
Q  494 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 593  Q
    ||||||||      |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||    
T  2410043 atgcttga------tga---tgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaattagcaatatctagaaaca 2410133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 511 - 670
Target Start/End: Complemental strand, 18353894 - 18353733
Alignment:
Q  511 gtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaaga--aaagtctagag 608  Q
    ||||||||||||||| || |||||||| || |||||||||||||| || ||||  ||||| ||| |||||| |||||||||||  ||  | |    | ||    
T  18353894 gtatgccaaaacacttggaggtgagccctaattatactactctagtaatgctccacattacaaaatagaaagatctagaaacattgattagaaataaaag 18353795  T
Q  609 atatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgct 670  Q
    | |||||||||||||| ||||  ||||||||||||||||||||  |||| || |||||||||    
T  18353794 acatggatactctagttcatatgactagaaggatctagaaaagataagattttcctagtgct 18353733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 683 - 754
Target Start/End: Original strand, 419213 - 419284
Alignment:
Q  683 tctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttc 754  Q
    ||||||||| ||||||||||||  ||  ||| |||||||||| || ||||| ||||||||||||||||||||    
T  419213 tctagtagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 419284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 270; Significance: 1e-150; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 395 - 801
Target Start/End: Complemental strand, 45162364 - 45161971
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 494  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    | ||||  |    
T  45162364 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat----gtttgatga 45162269  T
Q  495 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaa 594  Q
    |||||||||||         ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||    
T  45162268 tgcttgagtat---------gccaaaacactaggtggtgagccttatttatactattctaggaagactctccattacaaactagaaatatctagaaacaa 45162178  T
Q  595 agaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatc 694  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |     
T  45162177 agaaaagtctagagatatggatactctagtacataaacctagaaggatctagaaaagtaaagacttccctagtgcttatttagtagtgtctagtagcttt 45162078  T
Q  695 cttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattattt 794  Q
    |||||||||||||||||||||| |||||||||| ||||| |||||| ||||||||||||||| ||||||||   | ||||||||| |||||||||||||     
T  45162077 cttattattccctagtattctaaagacttctatattattctttagtcttctagagacttccatattattcttcaccattctagagacttccatattattc 45161978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 397 - 805
Target Start/End: Complemental strand, 45167254 - 45166859
Alignment:
Q  397 gctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgactatg 496  Q
    ||||| |||||||||||||| ||  |||||| |||||||||||||||||||| ||| ||||||||||||| ||||||||||||||    | ||||  |||    
T  45167254 gctcatggacaaaaggaaagttaccgaaaatagagaaacactctaatattcttaaaaaaaagttatattatttgaatgattcaat----gtttgatgatg 45167159  T
Q  497 cttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaag 596  Q
    |||||||||         ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||    
T  45167158 cttgagtat---------gccaaaacactaggtggtgagccttatttatactattctaggaagactctccattacaaactagaaatatctagaaacaaag 45167068  T
Q  597 aaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatcct 696  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  45167067 aaaagtctagagatatggatactctagtacataaacctagaaggatctagaaaagtaaagacttccctagtgcttatttagtagtgtctagtagcttcct 45166968  T
Q  697 tattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattattttt 796  Q
    |||||||||||||||||||| |||||||||| ||||| |||||| ||||||||||||||| ||||||||   | ||||||||| ||||||||||||| ||    
T  45166967 tattattccctagtattctaaagacttctatattattctttagtcttctagagacttccatattattcttcaccattctagagacttccatattattctt 45166868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 232; E-Value: 1e-127
Query Start/End: Original strand, 394 - 765
Target Start/End: Original strand, 42468438 - 42468795
Alignment:
Q  394 ttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgact 493  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    ||||||      
T  42468438 ttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgcttcaat----gcttgatg 42468533  T
Q  494 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 593  Q
    |||||| ||||||          ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  42468534 atgcttcagtatc----------caaaacactagatggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaaca 42468623  T
Q  594 aagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcat 693  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |    
T  42468624 aagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagctt 42468723  T
Q  694 ccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 765  Q
    ||||||||||||| |||||||||||| |||| || ||||| || |   ||||||||||||||| ||||||||    
T  42468724 ccttattattccccagtattctagagtcttccatattattcttcaccattctagagacttccatattattct 42468795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 395 - 765
Target Start/End: Original strand, 42470768 - 42471124
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 494  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    ||||||  |    
T  42470768 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgcttcaat----gcttgatga 42470863  T
Q  495 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaa 594  Q
    ||||| ||||||          ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42470864 tgcttcagtatc----------caaaacactagatggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaa 42470953  T
Q  595 agaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatc 694  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||    
T  42470954 agaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttc 42471053  T
Q  695 cttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 765  Q
    |||||||||||| |||||||||||| |||| || ||||| || |   ||||||||||||||| ||||||||    
T  42471054 cttattattcccaagtattctagagtcttccatattattcttcaccattctagagacttccatattattct 42471124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 174; E-Value: 5e-93
Query Start/End: Original strand, 516 - 733
Target Start/End: Original strand, 50855868 - 50856085
Alignment:
Q  516 ccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtctagagatatgga 615  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  50855868 ccaaaacactaggtggtgaaccttatttatactactctaggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagatatgga 50855967  T
Q  616 tactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatccttattattccctagtattct 715  Q
    |||||| ||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  50855968 tactctggtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccatagtattct 50856067  T
Q  716 agagacttctattttatt 733  Q
    ||||||||| || |||||    
T  50856068 agagacttccatattatt 50856085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 170; E-Value: 1e-90
Query Start/End: Original strand, 395 - 666
Target Start/End: Original strand, 19429076 - 19429334
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagt-tatattacttgaatgattcaattaatgcttgact 493  Q
    ||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||                
T  19429076 tggctcacggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaagtatatattacttgaatgattcaat------------ 19429163  T
Q  494 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 593  Q
      ||||||||||||||| |||  | ||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||    
T  19429164 --gcttgagtatcttgaatatatctaaacacttggtggtgagccttatttatactactctaggtaggctctccattacaaactagaaatatctataaaca 19429261  T
Q  594 aagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctag 666  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19429262 aagaaaagtctagagatatgaatactctagtacataaaactagaaggatctagaaaagtcaagacttccctag 19429334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 395 - 593
Target Start/End: Complemental strand, 13774336 - 13774151
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 494  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||  |    
T  13774336 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattc----aatgcttgatga 13774241  T
Q  495 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 593  Q
    ||         ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  13774240 tg---------cttcagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctacattacaaactagaaatatctagaaaca 13774151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 519 - 721
Target Start/End: Complemental strand, 8739467 - 8739264
Alignment:
Q  519 aaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtctagagatatggatac 618  Q
    ||||||| |||||| |||||| ||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| |    
T  8739467 aaacacttggtggtaagccttgtttatacaactctaggaaggctctacattacaaactagaaatatctagaaacaaagaaaaatctagagatatggatgc 8739368  T
Q  619 tctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgctta--tttagtagtgtctagtagcatccttattattccctagtattcta 716  Q
    |||||| ||||  ||||||||||||||||||  | |||| ||||||||||| ||  |||||| |||| ||||||| ||||||||||||  ||||||||||    
T  8739367 tctagttcatatgactagaaggatctagaaacattaagatttccctagtgcataattttagt-gtgtatagtagcttccttattattcattagtattcta 8739269  T
Q  717 gagac 721  Q
    |||||    
T  8739268 gagac 8739264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 90; E-Value: 7e-43
Query Start/End: Original strand, 398 - 593
Target Start/End: Complemental strand, 13776630 - 13776449
Alignment:
Q  398 ctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaa-gaaaagttatattacttgaatgattcaattaatgcttgactatg 496  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    ||||||||| | |     
T  13776630 ctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaacgaaaagttatattacttgaatgattc----aatgcttgattct- 13776536  T
Q  497 cttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 593  Q
              |||| | |||| |||||||  | ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  13776535 ----------ttgaatgtgcctaaacacttagcggtgagccttatttatactactctaggaaggctctgcattacaaactagaaatatctagaaaca 13776449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 395 - 481
Target Start/End: Original strand, 50855771 - 50855857
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 481  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  50855771 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcgaggaaaagttatattacttgaatgattcaat 50855857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 531 - 657
Target Start/End: Complemental strand, 43179710 - 43179575
Alignment:
Q  531 gtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca---------aagaaaagtctagagatatggatactct 621  Q
    |||||||| |||||||||||||||| ||  |||| ||||| |||||||||||||||| |||||         ||||||||| |||||| |||||||||||    
T  43179710 gtgagcctaatttatactactctagaaaaactctgcattacaaactagaaatatctacaaacattgattacaaagaaaagtatagagacatggatactct 43179611  T
Q  622 agtacataaaactagaaggatctagaaaagtcaaga 657  Q
    ||| ||||  |||||||||||| | |||||| ||||    
T  43179610 agttcatatgactagaaggatccaaaaaagttaaga 43179575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 518 - 652
Target Start/End: Original strand, 24908156 - 24908298
Alignment:
Q  518 aaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca--------aagaaaagtctagaga 609  Q
    |||||||| |||||||| || |||||||||||||||||||||| ||  | ||| ||| |||||| || ||||| ||        |||||||||||| |||    
T  24908156 aaaacacttggtggtgaaccctatttatactactctaggaaggttccacgttacaaagtagaaagatgtagaagcatttattacaagaaaagtctaaaga 24908255  T
Q  610 tatggatactctagtacataaaactagaaggatctagaaaagt 652  Q
    |||||||||| |||| ||||  |||| || || ||||||||||    
T  24908256 tatggatactttagttcatatgactaaaaagacctagaaaagt 24908298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 742 - 805
Target Start/End: Original strand, 42468742 - 42468805
Alignment:
Q  742 ttctagagacttccacattattctctgctattctagagtcttccatattatttttcatcattct 805  Q
    |||||||| |||||| ||||||||   | ||||||||| ||||||||||||| |||||||||||    
T  42468742 ttctagagtcttccatattattcttcaccattctagagacttccatattattcttcatcattct 42468805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 395 - 456
Target Start/End: Complemental strand, 8739562 - 8739501
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaa 456  Q
    ||||||||||| ||||||||||  |||||||||  |||||| ||||||| ||||||| ||||    
T  8739562 tggctcagggataaaaggaaagaaagagaaaataaagaaactctctaatgttctcaaggaaa 8739501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 270; Significance: 1e-150; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 395 - 805
Target Start/End: Complemental strand, 31487069 - 31486671
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaag-aaaagttatattacttgaatgattcaattaatgcttgact 493  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||                
T  31487069 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaat------------ 31486982  T
Q  494 atgcttgagtatcttgagtatgccaaaacact-aggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaac 592  Q
      |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  31486981 --gcttgattatcttgagtatgccaaaacacttaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctggaaac 31486884  T
Q  593 aaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagca 692  Q
    ||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  31486883 aaagaaaagtccagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagct 31486784  T
Q  693 tccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattat 792  Q
    ||||||||||||||||||||||||||||||||||| ||||| | |||| |||||||| |||||||||||||| ||  |||||||||||||||||||||||    
T  31486783 tccttattattccctagtattctagagacttctatattattctctagtcttctagaggcttccacattattccctagtattctagagtcttccatattat 31486684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 393 - 805
Target Start/End: Complemental strand, 31489355 - 31488955
Alignment:
Q  393 tttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaag-aaaagttatattacttgaatgattcaattaatgcttga 491  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||              
T  31489355 tttggcttagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaat---------- 31489266  T
Q  492 ctatgcttgagtatcttgagtatgccaaaacact-aggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaa 590  Q
        |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||    
T  31489265 ----gcttgattatcttgagtatgccaaaacacttaggtggtgagccttatttatactactttaggaaggctctccattacaaactagaaatatctggaa 31489170  T
Q  591 acaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtag 690  Q
    ||||||||||||| ||||||||||||||||||||||||||   ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  31489169 acaaagaaaagtccagagatatggatactctagtacataagcttagaaggatctagaaaagctaagacttccctagtgcttatttagtagtgtctagtag 31489070  T
Q  691 catccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatatt 790  Q
    | ||||||||||||||||||||||||||||||||||| ||||| |||||| || |||||||||||||||||||| ||  |||||||||||||||||||||    
T  31489069 cttccttattattccctagtattctagagacttctatattattctttagtcttttagagacttccacattattccctagtattctagagtcttccatatt 31488970  T
Q  791 atttttcatcattct 805  Q
    ||| |||| ||||||    
T  31488969 attcttcaccattct 31488955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 506 - 793
Target Start/End: Complemental strand, 29802067 - 29801774
Alignment:
Q  506 cttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtcta 605  Q
    ||||| |||||| ||||||| ||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||| |||||||||||||||||    
T  29802067 cttgactatgcctaaacacttggtggtgagccttatttatactactctaggaagactccccattacaaactagaaatatctacaaacaaagaaaagtcta 29801968  T
Q  606 gagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgctta--tttagtagtgtctagtagc----atccttat 699  Q
    ||||||||||| || |||| ||||  ||||||||||| ||||||  | |||| ||  | ||||||||  ||||| |||||||||||||     |||||||    
T  29801967 gagatatggatgctatagttcatatgactagaaggatttagaaacattaagatttttccagtgcttaattttag-agtgtctagtagctagattccttat 29801869  T
Q  700 tattccctagtattctagagacttctattttattatttagtgttctagagacttccacatta-ttctctgctattctagagtcttccatattatt 793  Q
    |||||  |||||||||||| |||||  | ||||| ||| |||||||||||||||||| |||| || | |  |||||||||| |||||||||||||    
T  29801868 tattctttagtattctagatacttccctattattctttggtgttctagagacttccatattatttttttattattctagagacttccatattatt 29801774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 100; E-Value: 7e-49
Query Start/End: Original strand, 395 - 593
Target Start/End: Original strand, 42275556 - 42275739
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 494  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    ||| ||||| |     
T  42275556 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattc----aatacttgattc 42275651  T
Q  495 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 593  Q
    |           |||| | |||| |||||||  ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  42275652 t-----------ttgaatgtgcctaaacacttagtggtgagccttatttatactactctaggaaggctctacattacaaactagaaatatctagaaaca 42275739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 100; E-Value: 7e-49
Query Start/End: Original strand, 395 - 593
Target Start/End: Original strand, 42277782 - 42277965
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 494  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||| |     
T  42277782 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattc----aatgcttgattc 42277877  T
Q  495 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 593  Q
    |           |||| | |||| |||||||  |||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||    
T  42277878 t-----------ttgaatgtgcctaaacacttagtggtgagccttatttatactactctaggaagactctacattacaaactagaaatatctagaaaca 42277965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 394 - 803
Target Start/End: Complemental strand, 23860188 - 23859767
Alignment:
Q  394 ttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgact 493  Q
    |||||||||||||||||||||| | | ||||||| ||||||| ||||||||||||||||||||  |  ||||| || |||| ||||||                
T  23860188 ttggctcagggacaaaaggaaaagcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaat------------ 23860101  T
Q  494 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaa--- 590  Q
      ||||||||||||||| ||| |  ||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||       
T  23860100 --gcttgagtatcttgaatatacgtaaacacttggtggtgagccttatttatactactctaggaaggctctacattacaaactagaattatctagaaata 23860003  T
Q  591 ------acaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtg-----------cttat 673  Q
          ||||||||| | ||||| | ||| |||||||||| ||||| ||||||||||||||||||||  |||| ||| ||||||            ||||    
T  23860002 ttgattacaaagaaaggcctagaaacatgcatactctagttcataagactagaaggatctagaaaagctaagatttctctagtgtctaattttattttat 23859903  T
Q  674 ttagtag--tgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagag----acttccacattattctct 767  Q
    |||||||  ||| ||||||| ||||||||||| | |||||||||||||||| | || ||||| |||||||||||||||    | ||||| |||||||  |    
T  23859902 ttagtagaatgtttagtagcttccttattatttcatagtattctagagactcccatattattctttagtgttctagaggcttaattccatattattcatt 23859803  T
Q  768 gctattctagagtcttccatattatttttcatcatt 803  Q
      ||||||||||| ||||||||  || |||||||||    
T  23859802 agtattctagagtgttccatatctttcttcatcatt 23859767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 513 - 765
Target Start/End: Original strand, 34576694 - 34576969
Alignment:
Q  513 atgccaaaacactaggtggtgagccttatttatactactct-aggaaggctctccattataaactagaaatatctagaa---------acaaagaaaagt 602  Q
    ||||| ||||||| | ||||||||||||||||||||| ||| ||||||||||| ||||| |||||||||||||||||||         ||||||||||||    
T  34576694 atgcctaaacacttgatggtgagccttatttatactaatcttaggaaggctctacattacaaactagaaatatctagaaacattgattacaaagaaaagt 34576793  T
Q  603 ctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgc-----------ttatttagt--agtgtctagta 689  Q
    ||||||| ||| |||||||||| ||||  ||||||||||||||||||||| |||| ||| |||||||           |||||||||  |||||| ||||    
T  34576794 ctagagacatgaatactctagttcatatgactagaaggatctagaaaagttaagatttctctagtgcgtaattttattttatttagtagagtgtccagta 34576893  T
Q  690 gcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 765  Q
    || ||||  ||||||  ||||||| |||||||||| || ||||| |||||||||||||||||||||||||||||||    
T  34576894 gcttcctcgttattctttagtattttagagacttccatattattctttagtgttctagagacttccacattattct 34576969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 79; E-Value: 3e-36
Query Start/End: Original strand, 395 - 481
Target Start/End: Original strand, 5164151 - 5164237
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 481  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5164151 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgcttcaat 5164237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 401 - 481
Target Start/End: Original strand, 8995076 - 8995156
Alignment:
Q  401 agggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 481  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8995076 agggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaagttatattacttgaatgattcaat 8995156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 401 - 481
Target Start/End: Complemental strand, 15730093 - 15730013
Alignment:
Q  401 agggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 481  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  15730093 agggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaataaaagttatattacttgaatgattcaat 15730013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 395 - 457
Target Start/End: Original strand, 39816089 - 39816151
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaa 457  Q
    ||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  39816089 tggctcacggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaa 39816151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 403 - 456
Target Start/End: Original strand, 34576612 - 34576665
Alignment:
Q  403 ggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaa 456  Q
    |||||||||| |||||||||||||| ||||||| ||||||||||||||||||||    
T  34576612 ggacaaaaggtaaggtagagaaaatagagaaactctctaatattctcaaagaaa 34576665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 694 - 805
Target Start/End: Complemental strand, 15729981 - 15729871
Alignment:
Q  694 ccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattatt 793  Q
    |||||||||||  ||||||||||||||||||  |  |||| |||  ||| |||||||||||||||||||||| |  | |||||||| | |||||||||||    
T  15729981 ccttattattctttagtattctagagacttccttaatattcttttatgt-ctagagacttccacattattctttattgttctagagacatccatattatt 15729883  T
Q  794 tttcatcattct 805  Q
     |||||||||||    
T  15729882 cttcatcattct 15729871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 517 - 558
Target Start/End: Original strand, 8995169 - 8995210
Alignment:
Q  517 caaaacactaggtggtgagccttatttatactactctaggaa 558  Q
    ||||||||| ||||| ||||||||||||||||||||||||||    
T  8995169 caaaacacttggtggagagccttatttatactactctaggaa 8995210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 729 - 805
Target Start/End: Original strand, 34576903 - 34576979
Alignment:
Q  729 ttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattatttttcatcattct 805  Q
    ||||| |||||| || |||||||||||| |||||||| |  | |||||||| |||||| |||||| |||||||||||    
T  34576903 ttattctttagtattttagagacttccatattattctttagtgttctagagacttccacattattcttcatcattct 34576979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 729 - 796
Target Start/End: Complemental strand, 29801869 - 29801802
Alignment:
Q  729 ttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattattttt 796  Q
    ||||| |||||| ||||||| ||||||  |||||||| || | |||||||| ||||||||||||||||    
T  29801869 ttattctttagtattctagatacttccctattattctttggtgttctagagacttccatattattttt 29801802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 237; Significance: 1e-130; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-130
Query Start/End: Original strand, 395 - 805
Target Start/End: Original strand, 11852175 - 11852561
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 494  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||| |    
T  11852175 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattca----atgcttgacga 11852270  T
Q  495 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaa 594  Q
    |                    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  11852271 t--------------------ccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattaccaactagaaatatctagaaacaa 11852350  T
Q  595 agaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatc 694  Q
    | ||||||||||||||||||||||||||||||||||  ||||||||  |||||||||| | |||||||||||||||||||||||||||||||||||| ||    
T  11852351 ataaaagtctagagatatggatactctagtacataagcctagaaggtcctagaaaagttatgacttccctagtgcttatttagtagtgtctagtagcttc 11852450  T
Q  695 cttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattattt 794  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||| |||||||   |  ||||||||||||||||||||||||     
T  11852451 cttattattccctagtattctagagacttctatattattctttagtcttctagagacttcctcattatttcatagtattctagagtcttccatattattc 11852550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 517 - 805
Target Start/End: Complemental strand, 37207948 - 37207660
Alignment:
Q  517 caaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtctagagatatggat 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||    
T  37207948 caaaacactaggtggtgagccttatttatactactctaggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagacatggat 37207849  T
Q  617 actctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatccttattattccctagtattcta 716  Q
    ||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37207848 actctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattcta 37207749  T
Q  717 gagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattatttttcatcattct 805  Q
     |||||||||| ||||| |||||| ||||||||||||||||||||||| ||  |||||||||||||||||||||||| |||||||||||    
T  37207748 cagacttctatattattctttagtcttctagagacttccacattattccctagtattctagagtcttccatattattcttcatcattct 37207660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 516 - 805
Target Start/End: Original strand, 23164347 - 23164636
Alignment:
Q  516 ccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtctagagatatgga 615  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  23164347 ccaaaacactaggtggtgggccttatttatactactctaggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagatatgga 23164446  T
Q  616 tactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatccttattattccctagtattct 715  Q
    |||||||||||||||  |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  23164447 tactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgtttatttagtagtgtctagtagcttccttattattccctagtattct 23164546  T
Q  716 agagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattatttttcatcattct 805  Q
    |||||||||||| ||||| |||||| ||||||||||||||||||||||| ||  |||||||||||||||||||||||| |||| ||||||    
T  23164547 agagacttctatattattctttagtcttctagagacttccacattattccctagtattctagagtcttccatattattcttcaccattct 23164636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 516 - 805
Target Start/End: Complemental strand, 22600989 - 22600700
Alignment:
Q  516 ccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtctagagatatgga 615  Q
    |||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  22600989 ccaaaacactaggtggtgagccttatttatactactttagcaagactctccattaccaactagaaatatctagaaacaaagaaaagtctagagatatgga 22600890  T
Q  616 tactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatccttattattccctagtattct 715  Q
    |||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| | ||||||||||| |||||||||    
T  22600889 tactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtcaagtagctttcttattattccatagtattct 22600790  T
Q  716 agagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattatttttcatcattct 805  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||| ||  |||||||||||||||||||||||| |||||||||||    
T  22600789 agagacttctatattattatttagtcttctagagacttccacattattccctaatattctagagtcttccatattattcttcatcattct 22600700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 516 - 805
Target Start/End: Original strand, 11850014 - 11850303
Alignment:
Q  516 ccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtctagagatatgga 615  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  11850014 ccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagatatgga 11850113  T
Q  616 tactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatccttattattccctagtattct 715  Q
    |||||| ||||||||  |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |    
T  11850114 tactcttgtacataagcctagaaggatctagaaaatttaagacttccctagtgcttatttagtagtgtctagtagctttcttattattccctagtatttt 11850213  T
Q  716 agagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattatttttcatcattct 805  Q
    |||||||||||| ||||| |||||| |||||||||||||||||||||||  |  ||||| |||||||||||||||||| |||| ||||||    
T  11850214 agagacttctatattattctttagtcttctagagacttccacattattccatagtattcaagagtcttccatattattcttcaccattct 11850303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 517 - 660
Target Start/End: Complemental strand, 37215539 - 37215396
Alignment:
Q  517 caaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtctagagatatggat 616  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||| |||||| ||||||    
T  37215539 caaaacactatgtggtgagccttatttatactactctaggaaggctcttcattaccaactagaaatatctagaaacaaagaaaagtttagagacatggat 37215440  T
Q  617 actctagtacataaaactagaaggatctagaaaagtcaagactt 660  Q
    ||||||||| ||||  |||||||||||||||||||| |||||||    
T  37215439 actctagtatataagcctagaaggatctagaaaagttaagactt 37215396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 517 - 765
Target Start/End: Original strand, 1779316 - 1779581
Alignment:
Q  517 caaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca---------aagaaaagtctaga 607  Q
    ||||||||| | ||||||||||||||||||| |||||||||||||||| ||||| ||||||||| ||||||||||||         |||||| | |||||    
T  1779316 caaaacacttgttggtgagccttatttataccactctaggaaggctctacattacaaactagaattatctagaaacattgattacaaagaaaggcctaga 1779415  T
Q  608 gatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgctt------atttagt--agtgtctagtagcatccttat 699  Q
     | |||||||||||||| ||||  ||||||||||||||||||  | |||| ||  |||||||||      |||||||  ||||||||||||| |||||||    
T  1779416 aacatggatactctagttcatatgactagaaggatctagaaacattaagatttttctagtgctttattttatttagtggagtgtctagtagcttccttat 1779515  T
Q  700 tattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 765  Q
    |||||| ||||||| ||||||||||||| ||||| |||||| ||||||| ||||||| ||||||||    
T  1779516 tattccatagtattttagagacttctatattattctttagttttctagaaacttccatattattct 1779581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 394 - 481
Target Start/End: Original strand, 11849916 - 11850003
Alignment:
Q  394 ttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 481  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11849916 ttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattatttgaatgattcaat 11850003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 79; E-Value: 3e-36
Query Start/End: Original strand, 395 - 481
Target Start/End: Original strand, 23164254 - 23164340
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 481  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23164254 tggctcagggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 23164340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 394 - 481
Target Start/End: Complemental strand, 22601088 - 22601000
Alignment:
Q  394 ttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaag-ttatattacttgaatgattcaat 481  Q
    ||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||| |||||||| ||||||| ||||||    
T  22601088 ttggctcagggacaaaagggaaggtagagaaaatagagaaactctctaatattctcaaagaaaagattatattatttgaatgcttcaat 22601000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 395 - 481
Target Start/End: Complemental strand, 37215638 - 37215551
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaag-ttatattacttgaatgattcaat 481  Q
    |||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||| |||||||| ||||||| ||||||    
T  37215638 tggctcagggacaaaagggaaggtagagaaaatagagaaactctctaatattctcaaagaaaagattatattatttgaatgcttcaat 37215551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 395 - 481
Target Start/End: Original strand, 1779222 - 1779303
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 481  Q
    |||||||||||||||||||||     ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1779222 tggctcagggacaaaaggaaa-----agaaaatagaggaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 1779303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 554 - 805
Target Start/End: Original strand, 1779587 - 1779855
Alignment:
Q  554 aggaaggctctccattataaactagaaatatctagaaaca---------aagaaaagtctagagatatggatactctagtacataaaactagaaggatct 644  Q
    ||||||||| | ||||| ||||||||||||||||||||||         | |||| | ||||||||| ||||| |||||| ||||  |||||||||||||    
T  1779587 aggaaggctttacattacaaactagaaatatctagaaacattgattacaaggaaaggcctagagatagggatattctagttcatatgactagaaggatct 1779686  T
Q  645 agaaaagtcaagacttccctagtgctt-attt-----agtag--tgtctagtagcatccttattattccctagtattctagagacttctattttattatt 736  Q
    |||||  | |||| |||||||| |||| ||||     |||||  ||||||||||| ||   |||||||  |||||||||||||||||| || ||||| ||    
T  1779687 agaaacattaagatttccctagcgctttattttatccagtagaatgtctagtagcttcgacattattctttagtattctagagacttccatattattctt 1779786  T
Q  737 tagtgttctagagacttccacattattctctgctattctagagtcttccatattatttttcatcattct 805  Q
    ||||||| | |||||||||||||| |||| |  |||||||  | ||||||||||||| |||||||||||    
T  1779787 tagtgttatggagacttccacatttttctttagtattctaaggacttccatattattcttcatcattct 1779855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 395 - 473
Target Start/End: Complemental strand, 21743797 - 21743719
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaat 473  Q
    |||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||  |||||||| ||||||    
T  21743797 tggcccagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaagtttatattatttgaat 21743719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 395 - 466
Target Start/End: Complemental strand, 37208070 - 37207998
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaag-ttatatta 466  Q
    |||||||||||||||||| |||||||||||||| ||||||| ||||||||||||| |||||||| ||||||||    
T  37208070 tggctcagggacaaaagggaaggtagagaaaatagagaaactctctaatattctcgaagaaaagattatatta 37207998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 506 - 593
Target Start/End: Complemental strand, 21743709 - 21743622
Alignment:
Q  506 cttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 593  Q
    |||||||||||| || |||| ||||||||  |||||||||||||||||||||||||||| || || |||||| ||||||||| |||||    
T  21743709 cttgagtatgcctaaccacttggtggtgaatcttatttatactactctaggaaggctctacactacaaactaaaaatatctaaaaaca 21743622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 395 - 456
Target Start/End: Complemental strand, 15469258 - 15469197
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaa 456  Q
    ||||||||||||||||||||||||| | ||||| ||||||| ||||||||||||||||||||    
T  15469258 tggctcagggacaaaaggaaaggtaaaaaaaatagagaaactctctaatattctcaaagaaa 15469197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 519 - 559
Target Start/End: Original strand, 1779181 - 1779221
Alignment:
Q  519 aaacactaggtggtgagccttatttatactactctaggaag 559  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  1779181 aaacacttggtggtgagccttatttatactactctaggaag 1779221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 698 - 765
Target Start/End: Complemental strand, 37207707 - 37207640
Alignment:
Q  698 attattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 765  Q
    |||||||||||||||||||||| |||| || ||||| || |   ||||||||||||||| ||||||||    
T  37207707 attattccctagtattctagagtcttccatattattcttcatcattctagagacttccatattattct 37207640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 167; Significance: 8e-89; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 167; E-Value: 8e-89
Query Start/End: Original strand, 395 - 630
Target Start/End: Complemental strand, 1801 - 1579
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 494  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    ||||||  |    
T  1801 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatatcctcaaagaaaagttatattacttgaatgattcaat----gcttgatga 1706  T
Q  495 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaa 594  Q
    |||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1705 tgcttgagtat---------gccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaa 1615  T
Q  595 agaaaagtctagagatatggatactctagtacataa 630  Q
    ||||||||||||||||||||||||||||||||||||    
T  1614 agaaaagtctagagatatggatactctagtacataa 1579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 2e-64; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 395 - 593
Target Start/End: Complemental strand, 4531020 - 4530835
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 494  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||  |    
T  4531020 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattc----aatgcttgatga 4530925  T
Q  495 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 593  Q
    ||         ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  4530924 tg---------cttcagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctacattacaaactagaaatatctagaaaca 4530835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 394 - 587
Target Start/End: Complemental strand, 4533318 - 4533138
Alignment:
Q  394 ttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgact 493  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||      
T  4533318 ttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattc----aatgcttgatg 4533223  T
Q  494 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatcta 587  Q
    |||         ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  4533222 atg---------cttcagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctacattacaaactagaaatatcta 4533138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 519 - 801
Target Start/End: Original strand, 18966221 - 18966518
Alignment:
Q  519 aaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtctagagatatggatac 618  Q
    ||||||| ||||||||||||||||||||||||||||||||| | |||||| | | ||||||||||||||||||| |||||||||| ||||||||||||||    
T  18966221 aaacacttggtggtgagccttatttatactactctaggaagacactccatgacacactagaaatatctagaaaccaagaaaagtcaagagatatggatac 18966320  T
Q  619 tctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgctt-----------atttagt--agtgtctagtagcatccttattattcc 705  Q
    |||||||| ||  ||||||||||||||||||  | |||| || ||||||||||           |||||||  ||| |||||||||  ||||||||||      
T  18966321 tctagtacgtatgactagaaggatctagaaacattaagattttcctagtgcttaattttatttcatttagtagagtatctagtagctaccttattattat 18966420  T
Q  706 ctagtattctagagacttctattttattatttagtgttctagagacttccacattattctctgctattct--agagtcttccatattatttttcatca 801  Q
    |||||||||||||||||||  | ||||| ||| ||||||||||||||||||||||||||| |  ||||||  |||| ||||||||||||| |||||||    
T  18966421 ctagtattctagagacttccctattattctttggtgttctagagacttccacattattctttagtattctagagagacttccatattattcttcatca 18966518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 593 - 668
Target Start/End: Complemental strand, 1701179 - 1701104
Alignment:
Q  593 aaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtg 668  Q
    ||||||||| ||||| ||||||||| |||| | ||||  ||||||||||||||||||||| |||| ||||||||||    
T  1701179 aaagaaaagcctagaaatatggataatctaattcatatgactagaaggatctagaaaagttaagatttccctagtg 1701104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 594 - 650
Target Start/End: Complemental strand, 8535578 - 8535522
Alignment:
Q  594 aagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaa 650  Q
    |||||||||||||||||||||||||| ||||  |||  |||||||||||||| ||||    
T  8535578 aagaaaagtctagagatatggatactttagtttatatgactagaaggatctaaaaaa 8535522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 729 - 801
Target Start/End: Complemental strand, 39578307 - 39578235
Alignment:
Q  729 ttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattatttttcatca 801  Q
    ||||| |||||||||||  | |||| ||||||||||| |  |||||||||||||||||||| ||| |||||||    
T  39578307 ttattctttagtgttctgtaaactttcacattattctttagtattctagagtcttccatatcattcttcatca 39578235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 99; Significance: 3e-48; HSPs: 6)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 506 - 672
Target Start/End: Complemental strand, 29426 - 29261
Alignment:
Q  506 cttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtcta 605  Q
    |||||||||||| |  |||| ||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||| ||||||||||||    
T  29426 cttgagtatgcctacgcacttggtggtgagccttatttatactactctaggaagactctccattacaaactaaaaatatctagaaac-aagaaaagtcta 29328  T
Q  606 gagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgctta 672  Q
    |||||||||||  |||||||||||  ||||||||||||||||||  | |||| ||||||||||||||    
T  29327 gagatatggatgttctagtacatatgactagaaggatctagaaacattaagatttccctagtgctta 29261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 506 - 672
Target Start/End: Complemental strand, 31741 - 31574
Alignment:
Q  506 cttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtcta 605  Q
    |||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||    
T  31741 cttgagtatgcctacacacttggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctaaaaac-aagaaaagtcta 31643  T
Q  606 gag--atatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgctta 672  Q
    |||  ||||||||  |||||||||||  ||||||||||||||||||  | |||| ||||||||||||||    
T  31642 gagatatatggatgttctagtacatatgactagaaggatctagaaacattaagatttccctagtgctta 31574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #3
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 395 - 456
Target Start/End: Complemental strand, 29514 - 29453
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaa 456  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  29514 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatgttctcaaagaaa 29453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 395 - 456
Target Start/End: Complemental strand, 31829 - 31768
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaa 456  Q
    ||||||| ||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  31829 tggctcaaggacaaaaggaaaggtagagaaaatagagaaactctctaatgttctcaaagaaa 31768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 718 - 806
Target Start/End: Complemental strand, 31527 - 31439
Alignment:
Q  718 agacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattatttttcatcattctt 806  Q
    ||||||| || ||||| || ||||||||||||||||||||||| |||| |  | || |||||  |||||||||||| ||||||||||||    
T  31527 agacttccatattattcttgagtgttctagagacttccacattgttctttagtgttttagagagttccatattattcttcatcattctt 31439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 718 - 805
Target Start/End: Complemental strand, 29209 - 29122
Alignment:
Q  718 agacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattatttttcatcattct 805  Q
    ||||||| || ||||| || | ||||||||||||||||||||| |||| |  | || ||||| ||||||||||||| |||||||||||    
T  29209 agacttccatattattcttgaatgttctagagacttccacattgttctttagtgttttagagacttccatattattcttcatcattct 29122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 79; Significance: 3e-36; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 79; E-Value: 3e-36
Query Start/End: Original strand, 395 - 481
Target Start/End: Complemental strand, 88531 - 88445
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 481  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  88531 tggctcagggacaaaaggaaaggtagagaaaatagagaaagactctaatattctcaaagaaaagttatattacttgaatgattcaat 88445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 717 - 801
Target Start/End: Complemental strand, 73153 - 73069
Alignment:
Q  717 gagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattatttttcatca 801  Q
    ||||||||||| ||||| |||||| ||||||||||||||| ||||||||   | ||||||||| ||||||||||||| |||||||    
T  73153 gagacttctatattattctttagtcttctagagacttccatattattcttcaccattctagagacttccatattattcttcatca 73069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1361 (Bit Score: 72; Significance: 4e-32; HSPs: 1)
Name: scaffold1361
Description:

Target: scaffold1361; HSP #1
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 395 - 481
Target Start/End: Complemental strand, 140 - 53
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaa-gaaaagttatattacttgaatgattcaat 481  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  140 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactttaatattctcaaacgaaaagttatattacttgaatgattcaat 53  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 55; Significance: 5e-22; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 395 - 473
Target Start/End: Original strand, 3707 - 3785
Alignment:
Q  395 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaat 473  Q
    ||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||  |||||||| ||||||    
T  3707 tggctcagggacaaaaggaaaggtagagaaaatagagtaactctctaatattctcaaagaaagtttatattatttgaat 3785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 8e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 527 - 733
Target Start/End: Complemental strand, 21199374 - 21199149
Alignment:
Q  527 ggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaa---------acaaagaaaagtctagag--atatgga 615  Q
    |||||||| ||||||||||| ||||| ||||||||| | ||||| |||||||||||||||||||         |||| |||| | ||||||  |||||||    
T  21199374 ggtggtgaaccttatttatagtactccaggaaggctgtacattacaaactagaaatatctagaaacattgattacaatgaaaggcctagagacatatgga 21199275  T
Q  616 tactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgc------ttatttagt--agtgtctagtagcatccttattattccct 707  Q
    ||||| ||| ||||  ||||||||||||||||||  | |||| ||  |||||||      |||||||||  ||||| ||||||| ||||||||||||| |    
T  21199274 tactccagttcatatgactagaaggatctagaaacattaagatttaactagtgctttattttatttagtagagtgtatagtagcttccttattattccat 21199175  T
Q  708 agtattctagagacttctattttatt 733  Q
    ||||||||||||||||| || |||||    
T  21199174 agtattctagagacttccatattatt 21199149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 397 - 456
Target Start/End: Complemental strand, 20642359 - 20642300
Alignment:
Q  397 gctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaa 456  Q
    |||||||||||||| |||||||||||||||| ||||||  ||||||||||||||||||||    
T  20642359 gctcagggacaaaatgaaaggtagagaaaatagagaaattctctaatattctcaaagaaa 20642300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 683 - 754
Target Start/End: Complemental strand, 11358 - 11287
Alignment:
Q  683 tctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttc 754  Q
    ||||||||| ||||||||||||  ||  ||| |||||||||| || ||||| ||||||||||||||||||||    
T  11358 tctagtagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 11287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 392 - 456
Target Start/End: Complemental strand, 64144 - 64082
Alignment:
Q  392 atttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaa 456  Q
    |||||| |||| ||||||| |||||||| ||||||| ||||||| ||  ||||||||||||||||    
T  64144 atttggatcagagacaaaatgaaaggtaaagaaaatagagaaaccct--aatattctcaaagaaa 64082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 392 - 456
Target Start/End: Complemental strand, 71476 - 71414
Alignment:
Q  392 atttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaa 456  Q
    |||||| |||| ||||||| |||||||| ||||||| ||||||| ||  ||||||||||||||||    
T  71476 atttggatcagagacaaaatgaaaggtaaagaaaatagagaaaccct--aatattctcaaagaaa 71414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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