View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6978_low_10 (Length: 556)

Name: NF6978_low_10
Description: NF6978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6978_low_10
NF6978_low_10
[»] chr3 (5 HSPs)
chr3 (1-392)||(7849961-7850352)
chr3 (447-549)||(7850646-7850748)
chr3 (389-443)||(7850529-7850583)
chr3 (453-547)||(8820569-8820663)
chr3 (494-546)||(20000538-20000590)
[»] chr6 (1 HSPs)
chr6 (454-549)||(22748919-22749014)
[»] chr4 (1 HSPs)
chr4 (484-546)||(44078727-44078789)
[»] chr2 (2 HSPs)
chr2 (404-446)||(13968990-13969032)
chr2 (402-446)||(4108903-4108947)
[»] chr1 (1 HSPs)
chr1 (453-540)||(13117242-13117330)


Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 7849961 - 7850352
Alignment:
Q  1 gaaaagaagaaatctttggaggaggctagttaaaagttgtggttcagtctcattacttcccatcttgatttttacaaagatgggatcaaaattcttagat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7849961 gaaaagaagaaatctttggaggaggctagttaaaagttgtggttcagtctcattacttcccatcttgatttttacaaagatgggatcaaaattcttagat 7850060  T
Q  101 atgctagcattattagattctcattcaaccatgatgtaataagaaaattatagtcaaaatgcaaactttaactaagtcaaacttggtctgacccattttt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  7850061 atgctagcattattagattctcattcaaccatgatgtaataagaaaattatagtcaaaatacaaactttaaccaagtcaaacttggtctgacccattttt 7850160  T
Q  201 gatcgttcagtttaactcatgcatcgaactagtgaataatacacattctggaaacaactaaagctgataagttgttttatatatgtacatattaacttca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7850161 gatcgttcagtttaactcatgcatcgaactagtgaataatacatattctggaaacaactaaagctgataagttgttttatatatgtacatatcaacttca 7850260  T
Q  301 gacatcatattttcacgctaagttattggagaatattatttggttatgttttttctgtgaaggagttatttagtaatgttatagtctatttc 392  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||    
T  7850261 gacatcatattttcacgcaaagttattggagaatattatttggttatattttttctttgaaggaattatttagtaatgttatagtctatttc 7850352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 447 - 549
Target Start/End: Original strand, 7850646 - 7850748
Alignment:
Q  447 tacacggttcaagataaagaattcgatctccttactactctctcggcgtctccttttataggcaacactttcttgatctaacgggtctttcttttgatgt 546  Q
    ||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  7850646 tacacggttcaagataaagaattcgatctccttactactctttcgttgtctccttttataggcaacactttcttgatctaacgggtctttttttttatgt 7850745  T
Q  547 cca 549  Q
    |||    
T  7850746 cca 7850748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 389 - 443
Target Start/End: Original strand, 7850529 - 7850583
Alignment:
Q  389 tttcaccatgtgtcctgttgacgtatgtaaacccaagttaattacaataagtgag 443  Q
    |||| |||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  7850529 tttcgccatgtgttctgttgacgtatgtaaactcaagttaattacaataagtgag 7850583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 547
Target Start/End: Original strand, 8820569 - 8820663
Alignment:
Q  453 gttcaagataaagaattcgatctccttactactctctcggcgtctccttttataggcaacactttcttgatctaacgggtctttcttttgatgtc 547  Q
    ||||||||||| ||||| ||| ||| |||| |||||| || |||||||||||||||   ||||||||| | |||| ||| |||||||| ||||||    
T  8820569 gttcaagataatgaatttgatgtccctactgctctctaggtgtctccttttataggtctcactttcttcacctaatgggcctttctttggatgtc 8820663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 494 - 546
Target Start/End: Complemental strand, 20000590 - 20000538
Alignment:
Q  494 gtctccttttataggcaacactttcttgatctaacgggtctttcttttgatgt 546  Q
    ||||||||||||||||| ||||||||||| |||| ||| |||||||| |||||    
T  20000590 gtctccttttataggcatcactttcttgacctaatgggcctttctttggatgt 20000538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 454 - 549
Target Start/End: Original strand, 22748919 - 22749014
Alignment:
Q  454 ttcaagataaagaattcgatctccttactactctctcggcgtctccttttataggcaacactttcttgatctaacgggtctttcttttgatgtcca 549  Q
    |||||||||| ||||| ||||   ||||| |||||| || |||||||||||||||  |||||||||||| |||| ||| |||||||| ||| ||||    
T  22748919 ttcaagataatgaatttgatccatttactgctctctaggtgtctccttttataggtcacactttcttgacctaatgggcctttctttggatttcca 22749014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 546
Target Start/End: Original strand, 44078727 - 44078789
Alignment:
Q  484 ctctctcggcgtctccttttataggcaacactttcttgatctaacgggtctttcttttgatgt 546  Q
    |||||| || ||||||||||||||||  |||||||||||||||| | |||| ||||| |||||    
T  44078727 ctctctaggtgtctccttttataggcttcactttcttgatctaatgagtctctctttggatgt 44078789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 404 - 446
Target Start/End: Complemental strand, 13969032 - 13968990
Alignment:
Q  404 tgttgacgtatgtaaacccaagttaattacaataagtgagctg 446  Q
    |||| |||||||||||| |||||||||||||| ||||||||||    
T  13969032 tgttcacgtatgtaaacacaagttaattacaacaagtgagctg 13968990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 402 - 446
Target Start/End: Original strand, 4108903 - 4108947
Alignment:
Q  402 cctgttgacgtatgtaaacccaagttaattacaataagtgagctg 446  Q
    |||||| |||||||||||| |||||||||||||| | ||||||||    
T  4108903 cctgtttacgtatgtaaacacaagttaattacaacaggtgagctg 4108947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 453 - 540
Target Start/End: Complemental strand, 13117330 - 13117242
Alignment:
Q  453 gttcaagataaagaattcgatctcctt-actactctctcggcgtctccttttataggcaacactttcttgatctaacgggtctttcttt 540  Q
    ||||||||||| |||||||||| |||| | | |||||| |  ||||||||||||||||  ||||||||||| ||||  || ||||||||    
T  13117330 gttcaagataatgaattcgatccccttcattgctctctagatgtctccttttataggcctcactttcttgacctaataggcctttcttt 13117242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University