View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6978_low_11 (Length: 532)
Name: NF6978_low_11
Description: NF6978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6978_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 20 - 522
Target Start/End: Original strand, 47885941 - 47886442
Alignment:
| Q |
20 |
gtgtccagcccagaaaattttaaagtaacatcacgcttacggatctgcagagcatcaagtcacaaatgttagaaatgagaaacagacaaaaagttacaat |
119 |
Q |
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| T |
47885941 |
gtgtccaccccagaaaattttaaagtaacatcacgcttacggatctgcagagcatcaagtcacaaatgtttgaaatgagaaacagacaaaaagttacaat |
47886040 |
T |
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| Q |
120 |
gtaaaatattatgttcatatataagagatatttaacttgtaaccaaaaaataagagatatttaactttagaactgtgtatgatatattttttcnnnnnnn |
219 |
Q |
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| T |
47886041 |
gtaaaatattatgttcatatataagagatatttaacttgtaaccaaaaaataagagatatttaactttagaactgtgtatgatatattttttcaaaaaaa |
47886140 |
T |
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| Q |
220 |
gaattgtgtatgataatataataagagaaaagggacaatcataatcaatgtaaactagtttacaccaacgtccaatgaaaattcaataatttgcgattat |
319 |
Q |
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| T |
47886141 |
gaattgtgtatgata-tataataagagaaaagggacaatcataatcgatgtaaactagtttacaccaacgtccgatgaaaattcaataatttgcgattat |
47886239 |
T |
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| Q |
320 |
tttttaatggcagtagcaaaataacacttatgttgcagtgccatgagttctcattgaatgacggtgtaaaactaaattatactaacggtgcatctccatt |
419 |
Q |
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| T |
47886240 |
tttttaatggcagtagcaaaataacgcttatgttgcagtgccatgagttctcattgaatgacggtgtaaaactaaattatactaacggtgcatctccatt |
47886339 |
T |
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| Q |
420 |
aatgtcatagaataaacatagattttatcatgttaccttgtctgtctgctcgcataaatatctaaaccttgccagcctatcgacaggaaaaatttgatgt |
519 |
Q |
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| T |
47886340 |
aatgtcatagaataaacatagattttatcatgttaccttctctgtctgctcgcataaatatctaaaccttgccagcctatcgacaggaaaaatttgaagt |
47886439 |
T |
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| Q |
520 |
cca |
522 |
Q |
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| T |
47886440 |
cca |
47886442 |
T |
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Back To:
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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 394
Target Start/End: Original strand, 18359356 - 18359388
Alignment:
| Q |
362 |
atgagttctcattgaatgacggtgtaaaactaa |
394 |
Q |
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| T |
18359356 |
atgagttctcattgaatgtcggtgtaaaactaa |
18359388 |
T |
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