View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6978_low_13 (Length: 517)
Name: NF6978_low_13
Description: NF6978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6978_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 250 - 489
Target Start/End: Complemental strand, 10545656 - 10545418
Alignment:
| Q |
250 |
ttatattattatgtgaaagacaagtcgcggaacagagcgcgtgatggttacttactttaccgacctaaagtgtttctgttcatcagaggattagtggtgt |
349 |
Q |
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| T |
10545656 |
ttatattattat-tgaaagacaagtcgcggaacagagcgcgtgatggtcacttactttaccgacctaaagtgtttctgttcatcagaggattagtggtgt |
10545558 |
T |
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| Q |
350 |
ttgttttgttttatccgaggtagattagtggtctttgttttgttttattggagatttaatgttaaccacatcaactcaatctattactaatcactaatat |
449 |
Q |
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| T |
10545557 |
ttgttttgttttatccgaggtagattagtggtctttgttttgttttactggagatttaatgttaaccacatcaactcaatctattactaatcactaatat |
10545458 |
T |
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| Q |
450 |
tttaattactatagataaaaacaaataaaacttcacatta |
489 |
Q |
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| T |
10545457 |
tttaattactatacataaaaacaaataaaacttcacatta |
10545418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 10545889 - 10545797
Alignment:
| Q |
11 |
acatcaatccaatccaaattcagtaacacacacaatttccctgcaaatttaacaacatcatcattgtttttcatatattcaatgatcaatctc |
103 |
Q |
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| T |
10545889 |
acatcaatccaatccaaattcagtaacacgcacaatttccctgcaaatttaacaacatcatcattgtttttcatatattcaatgatcaatctc |
10545797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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