View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6978_low_15 (Length: 472)
Name: NF6978_low_15
Description: NF6978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6978_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 435; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 17 - 459
Target Start/End: Original strand, 7762272 - 7762714
Alignment:
| Q |
17 |
atttccaacatgcaaacagcatcatcagaattggtatcaataagagacttcacctgttcgaaacgagaatcgagtccgactaggtgtttaatttgtaaag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7762272 |
atttccaacatgcaaacagcatcatcagaattggtatcaataagagacttcacctgttcgaaacgagaatcgagtccgactaggtgtttaatttgtaaag |
7762371 |
T |
|
| Q |
117 |
gtatgggaggtagtttagctgagatctctttgacaatcttctcaataaactcatattcatagctgtacagaaatacaataagaatgataaatcaaaagaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7762372 |
gtatgggaggtagtttagctgagatctctttgacaatcttctcaataaactcatattcatagctgtacagaaatacaataagaatgataaatcaaaagaa |
7762471 |
T |
|
| Q |
217 |
agtggggataaaatgattatgtgcaatattgctaaactcagaaaaaaggttattttattaatgatatcattaaagagagtataattaagtaaaatatata |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7762472 |
agtggggataaaatgattatgtgcaatattgctaaactcagaaaaaaggttattttattaatgatatcattaaagagagtataattaagtaaaatatata |
7762571 |
T |
|
| Q |
317 |
acaatcatattgacaaagatcataatttggaactattgatcctatatatatgtacaacatttgttctattgttgtagacttcggtgtcctaaaacattga |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
7762572 |
acaatcatattgacaaagatcataatttggaactattgatcctatatatatgtacaacatttgttctattgttgtatacttcggtgtcctgaaacattga |
7762671 |
T |
|
| Q |
417 |
actcagggaaggatcttccatagtcttttctgccactgaagta |
459 |
Q |
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| T |
7762672 |
actcagggaaggatcttccatagtcttttctgccactgaagta |
7762714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 55 - 196
Target Start/End: Original strand, 7838718 - 7838859
Alignment:
| Q |
55 |
aataagagacttcacctgttcgaaacgagaatcgagtccgactaggtgtttaatttgtaaaggtatgggaggtagtttagctgagatctctttgacaatc |
154 |
Q |
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||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||| | |||||| |
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| T |
7838718 |
aataagagatttcacctgttcgaaacgagaatcgagtccaactaggtgtttaatttgtaaaggcgtgggaggtagtttagctgagatgtctctcacaatc |
7838817 |
T |
|
| Q |
155 |
ttctcaataaactcatattcatagctgtacagaaatacaata |
196 |
Q |
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||||||||||||||| ||||||||||| | |||||||||||| |
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| T |
7838818 |
ttctcaataaactcagattcatagctgcatagaaatacaata |
7838859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 51 - 181
Target Start/End: Original strand, 7755198 - 7755328
Alignment:
| Q |
51 |
tatcaataagagacttcacctgttcgaaacgagaatcgagtccgactaggtgtttaatttgtaaaggtatgggaggtagtttagctgagatctctttgac |
150 |
Q |
| |
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||||||||| ||| |||||||||| |||||||| || ||| |||||||||||||| ||||||||||| | || |||||||||| ||||| ||| |||| |
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| T |
7755198 |
tatcaataatagatttcacctgtttgaaacgagtattgaggccgactaggtgtttgatttgtaaaggcacggtcggtagtttagtagagatatctctgac |
7755297 |
T |
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| Q |
151 |
aatcttctcaataaactcatattcatagctg |
181 |
Q |
| |
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|||||| |||||||||||| ||||||||||| |
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| T |
7755298 |
aatcttttcaataaactcagattcatagctg |
7755328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 28297312 - 28297344
Alignment:
| Q |
145 |
tttgacaatcttctcaataaactcatattcata |
177 |
Q |
| |
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|||||| |||||||||||||||||||||||||| |
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| T |
28297312 |
tttgactatcttctcaataaactcatattcata |
28297344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 28514761 - 28514729
Alignment:
| Q |
145 |
tttgacaatcttctcaataaactcatattcata |
177 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
28514761 |
tttgactatcttctcaataaactcatattcata |
28514729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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