View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6978_low_16 (Length: 466)

Name: NF6978_low_16
Description: NF6978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6978_low_16
NF6978_low_16
[»] chr2 (2 HSPs)
chr2 (19-466)||(24094598-24095050)
chr2 (116-160)||(28669004-28669048)
[»] chr7 (4 HSPs)
chr7 (213-290)||(29416601-29416677)
chr7 (266-319)||(19674036-19674089)
chr7 (111-150)||(23092241-23092280)
chr7 (268-310)||(8087899-8087941)
[»] chr5 (3 HSPs)
chr5 (119-160)||(16247026-16247067)
chr5 (119-160)||(31206374-31206415)
chr5 (115-160)||(33709524-33709569)
[»] chr3 (6 HSPs)
chr3 (115-160)||(10083840-10083885)
chr3 (117-160)||(4252419-4252462)
chr3 (115-160)||(10190763-10190808)
chr3 (115-160)||(25379892-25379937)
chr3 (352-397)||(31386759-31386804)
chr3 (115-160)||(49258283-49258328)
[»] chr8 (2 HSPs)
chr8 (115-160)||(32879414-32879459)
chr8 (111-147)||(4698740-4698776)
[»] chr6 (2 HSPs)
chr6 (350-383)||(29295073-29295106)
chr6 (216-288)||(1918373-1918444)
[»] chr4 (5 HSPs)
chr4 (116-160)||(4064991-4065035)
chr4 (115-155)||(23639760-23639800)
chr4 (115-155)||(23645418-23645458)
chr4 (120-148)||(42281123-42281151)
chr4 (220-288)||(43977313-43977380)


Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 466
Target Start/End: Original strand, 24094598 - 24095050
Alignment:
Q  19 gaatattgttcatgtttctgttttgtatgattggtaatgatgttgacttgattattcnnnnnnnnnnnnnnnnnnnnaactcgttgtatggcccatgaat 118  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||                    ||||| |||||||||||||||||    
T  24094598 gaatattgttcatgtttctgttttgtatgatcggtaatgatgttgacttgattattccttttttttttttttttt--aactccttgtatggcccatgaat 24094695  T
Q  119 cgactaatccgaggggtccaaccccaccgtccgcttgtggggcc-------atttagatgttgacatgacttagttggtcttatttgttgggagtcatag 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24094696 cgactaatccgaggggtccaaccccaccgtccgcttgtggggcccatttagatttagatgttgacatgacttagttggtcttatttgttgggagtcatag 24094795  T
Q  212 ttgtaatcaatgttttaaaaattgaactgtaacatcgaaccggcgagagctctggatcatggttcaactgctttaaacctctcaaactacgatgaaaccg 311  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  24094796 ttgtaagcaatgttttaaaaattgaactgtaacatcgaaccggcgagagctctggatcatggttcaactgctttaaacctctcaaactaggacgaaaccg 24094895  T
Q  312 caatcaaaacacttaaataaccaaccgtttgagaatatcagttcatggttcaactaattgaactgtctggtttggtttttaaaacatagttataagctaa 411  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24094896 caatcaaaacgcttaaataaccaaccgtttgagagtatcagttcatggttcaactaattgaactgtctggtttggtttttaaaacatagttataagctaa 24094995  T
Q  412 aatattgaaaattactgattgtgtgctaggtgaactggttgaagttatgttctag 466  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  24094996 aatattgaaaatgactgattgtgtgctaggtgaactggttgaagttatgttctag 24095050  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 28669048 - 28669004
Alignment:
Q  116 aatcgactaatccgaggggtccaaccccaccgtccgcttgtgggg 160  Q
    ||||||||||||||||||| |||| ||||||| || |||||||||    
T  28669048 aatcgactaatccgaggggaccaatcccaccgcccacttgtgggg 28669004  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 213 - 290
Target Start/End: Original strand, 29416601 - 29416677
Alignment:
Q  213 tgtaatcaatgttttaaaaattgaactgtaacatcgaaccggcgagagctctggatcatggttcaactgctttaaacc 290  Q
    ||||| ||||||||||||| ||||||||| ||||||||| ||||||| |||||  ||||||| |||||||| ||||||    
T  29416601 tgtaaccaatgttttaaaagttgaactgt-acatcgaactggcgagacctctgagtcatggtccaactgctctaaacc 29416677  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 266 - 319
Target Start/End: Original strand, 19674036 - 19674089
Alignment:
Q  266 gatcatggttcaactgctttaaacctctcaaactacgatgaaaccgcaatcaaa 319  Q
    ||||||||||||||||||||||||| ||||||| |  | |||||||||||||||    
T  19674036 gatcatggttcaactgctttaaaccactcaaaccaaaacgaaaccgcaatcaaa 19674089  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 150
Target Start/End: Complemental strand, 23092280 - 23092241
Alignment:
Q  111 ccatgaatcgactaatccgaggggtccaaccccaccgtcc 150  Q
    |||||||||||||||||||||||| |||| ||||||||||    
T  23092280 ccatgaatcgactaatccgaggggaccaatcccaccgtcc 23092241  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 310
Target Start/End: Complemental strand, 8087941 - 8087899
Alignment:
Q  268 tcatggttcaactgctttaaacctctcaaactacgatgaaacc 310  Q
    |||||| |||||||||||||||| ||||||||| |||||||||    
T  8087941 tcatggctcaactgctttaaaccgctcaaactaggatgaaacc 8087899  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 16247026 - 16247067
Alignment:
Q  119 cgactaatccgaggggtccaaccccaccgtccgcttgtgggg 160  Q
    ||||||||||||||||||||| |||||||||| |||||||||    
T  16247026 cgactaatccgaggggtccaatcccaccgtccacttgtgggg 16247067  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 31206415 - 31206374
Alignment:
Q  119 cgactaatccgaggggtccaaccccaccgtccgcttgtgggg 160  Q
    |||||||||||||| |||||| |||||||||| |||||||||    
T  31206415 cgactaatccgaggagtccaatcccaccgtccacttgtgggg 31206374  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 33709524 - 33709569
Alignment:
Q  115 gaatcgactaatccgaggggtccaaccccaccgtccgcttgtgggg 160  Q
    |||||||||||||||||||| |||| ||||||| || |||||||||    
T  33709524 gaatcgactaatccgaggggaccaatcccaccgcccacttgtgggg 33709569  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 10083840 - 10083885
Alignment:
Q  115 gaatcgactaatccgaggggtccaaccccaccgtccgcttgtgggg 160  Q
    |||||||||||||||||||| |||| |||||||||| |||||||||    
T  10083840 gaatcgactaatccgaggggaccaatcccaccgtccacttgtgggg 10083885  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 160
Target Start/End: Original strand, 4252419 - 4252462
Alignment:
Q  117 atcgactaatccgaggggtccaaccccaccgtccgcttgtgggg 160  Q
    |||||||||||||||||| |||| |||||||||| |||||||||    
T  4252419 atcgactaatccgaggggaccaatcccaccgtccacttgtgggg 4252462  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 10190763 - 10190808
Alignment:
Q  115 gaatcgactaatccgaggggtccaaccccaccgtccgcttgtgggg 160  Q
    |||||||||||||||||||| |||| |||||||||| |||| ||||    
T  10190763 gaatcgactaatccgaggggaccaatcccaccgtccacttgcgggg 10190808  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 25379937 - 25379892
Alignment:
Q  115 gaatcgactaatccgaggggtccaaccccaccgtccgcttgtgggg 160  Q
    |||||||||||||||||||| |||| ||||||| ||||||| ||||    
T  25379937 gaatcgactaatccgaggggaccaatcccaccgcccgcttgcgggg 25379892  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 397
Target Start/End: Complemental strand, 31386804 - 31386759
Alignment:
Q  352 gttcatggttcaactaattgaactgtctggtttggtttttaaaaca 397  Q
    ||||||||||||||  ||||||||||| |||||| |||||||||||    
T  31386804 gttcatggttcaaccgattgaactgtccggtttgctttttaaaaca 31386759  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 49258283 - 49258328
Alignment:
Q  115 gaatcgactaatccgaggggtccaaccccaccgtccgcttgtgggg 160  Q
    |||||||||||||||||||| |||| ||||||| || |||||||||    
T  49258283 gaatcgactaatccgaggggaccaatcccaccgcccacttgtgggg 49258328  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 32879459 - 32879414
Alignment:
Q  115 gaatcgactaatccgaggggtccaaccccaccgtccgcttgtgggg 160  Q
    |||||||||||||||||||| |||| ||||||| || |||||||||    
T  32879459 gaatcgactaatccgaggggaccaatcccaccgcccacttgtgggg 32879414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 147
Target Start/End: Original strand, 4698740 - 4698776
Alignment:
Q  111 ccatgaatcgactaatccgaggggtccaaccccaccg 147  Q
    |||||||||||||||||||||||| |||| |||||||    
T  4698740 ccatgaatcgactaatccgaggggaccaatcccaccg 4698776  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 383
Target Start/End: Original strand, 29295073 - 29295106
Alignment:
Q  350 cagttcatggttcaactaattgaactgtctggtt 383  Q
    |||||||||||||||| |||||||||||||||||    
T  29295073 cagttcatggttcaaccaattgaactgtctggtt 29295106  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 288
Target Start/End: Complemental strand, 1918444 - 1918373
Alignment:
Q  216 aatcaatgttttaaaaattgaactgtaacatcgaaccggcgagagctctggatcatggttcaactgctttaaa 288  Q
    ||||||||||||||||||||||  | | |||||||||||||||| |||  |||||||||| | ||| ||||||    
T  1918444 aatcaatgttttaaaaattgaatagga-catcgaaccggcgagacctccagatcatggtttatctgttttaaa 1918373  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 4065035 - 4064991
Alignment:
Q  116 aatcgactaatccgaggggtccaaccccaccgtccgcttgtgggg 160  Q
    ||||||||||||||||||| |||| ||||||| || |||||||||    
T  4065035 aatcgactaatccgaggggaccaatcccaccgcccacttgtgggg 4064991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 23639800 - 23639760
Alignment:
Q  115 gaatcgactaatccgaggggtccaaccccaccgtccgcttg 155  Q
    |||||||||||||||||||| |||| |||||||||| ||||    
T  23639800 gaatcgactaatccgaggggaccaatcccaccgtccacttg 23639760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 23645458 - 23645418
Alignment:
Q  115 gaatcgactaatccgaggggtccaaccccaccgtccgcttg 155  Q
    |||||||||||||||||||| |||| |||||||||| ||||    
T  23645458 gaatcgactaatccgaggggaccaatcccaccgtccacttg 23645418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 148
Target Start/End: Original strand, 42281123 - 42281151
Alignment:
Q  120 gactaatccgaggggtccaaccccaccgt 148  Q
    |||||||||||||||||||||||||||||    
T  42281123 gactaatccgaggggtccaaccccaccgt 42281151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 43977313 - 43977380
Alignment:
Q  220 aatgttttaaaaattgaactgtaacatcgaaccggcgagagctctggatcatggttcaactgctttaaa 288  Q
    |||||||||||||||||||| | ||||| ||||||  |||  | |||||||||||||||||| ||||||    
T  43977313 aatgttttaaaaattgaact-tgacatcaaaccggtcagacttttggatcatggttcaactggtttaaa 43977380  T

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