View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6978_low_18 (Length: 447)
Name: NF6978_low_18
Description: NF6978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6978_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 17 - 436
Target Start/End: Original strand, 14321030 - 14321448
Alignment:
| Q |
17 |
catcaacacggaagcggagccacataccatcaactccctggaacaaatgtcagcaagctaaacagctctttcgaactccacaatccaagccaaacataga |
116 |
Q |
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| T |
14321030 |
catcaacacggaagcggacccacataccatcaactccctggaacaaatgtcaacaagctaaacggctctttctaac-ccacaatccaagccaaacataga |
14321128 |
T |
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| Q |
117 |
gaacaacgagatatcatattagtcagaatcaatcatgagatacatatattaagagggcaaacaactgaaagacgatgctcatcacagtccgccggtggca |
216 |
Q |
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|||| |||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
14321129 |
gaacgacgagatatcatattagtcaaaatcgatcatgagatacatatattaagggggcaaacaattgaaagacgatgctcatcatagtccgccggtggca |
14321228 |
T |
|
| Q |
217 |
cctgaaacaaccgcgactaatataaaaaacaccaacccacaagcacggaggcggtagatcttaaaacaaattgccaccaaccatccataaactagataca |
316 |
Q |
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||| ||||||||||||| ||||| |||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
14321229 |
ccttaaacaaccgcgacgaatatcaaaaacaccaacccaccggcacggaggtggtagatcttaaaacaaattgtcaccaaccatccagaaactagataca |
14321328 |
T |
|
| Q |
317 |
acaccgcatcacgacccttgacaaacctttaagtcgactacatctaagaggacaaccgaagaaggttgggaagtagccgatgcttttaccaccggtagaa |
416 |
Q |
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|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
14321329 |
acaccgcatcgcgacccttgacaaacctttaagtcgacgacatctaagaggacaaccgaagaaggttgggaagtagccgatgcttgtaccaccggtagaa |
14321428 |
T |
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| Q |
417 |
aggcgacacatgatgtccat |
436 |
Q |
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| T |
14321429 |
aggcgacacacaatgtccat |
14321448 |
T |
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Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 264 - 387
Target Start/End: Complemental strand, 41907831 - 41907708
Alignment:
| Q |
264 |
gaggcggtagatcttaaaacaaattgccaccaaccatccataaactagatacaacaccgcatcacgacccttgacaaacctttaagtcgactacatctaa |
363 |
Q |
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||||||||| |||| |||||| || |||| |||||||| | ||||| ||||||||||| ||||| ||||||| |||||||| |||| || |||| || |
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| T |
41907831 |
gaggcggtaaatctgaaaacagatcgccagcaaccatctagaaactggatacaacaccatatcacaacccttggaaaacctttcagtcaacggcatcgaa |
41907732 |
T |
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| Q |
364 |
gaggacaaccgaagaaggttggga |
387 |
Q |
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| T |
41907731 |
gaggacaaccggagaatgttggga |
41907708 |
T |
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