View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6978_low_19 (Length: 428)
Name: NF6978_low_19
Description: NF6978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6978_low_19 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 8 - 428
Target Start/End: Complemental strand, 23447778 - 23447368
Alignment:
| Q |
8 |
tggacatcaaaattttttctattctacaatttctttaagtttatgttctaatatgatgataggaatttaatagaagagatttacgcattaaaagttcatt |
107 |
Q |
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| T |
23447778 |
tggacttcaaaattgtttctattctacaatttctttaagtttatattctaatattatgataggaatttaatagaagagatttacgcattaaaagttcatt |
23447679 |
T |
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| Q |
108 |
gcccatttgttaggagtgcagtagtttacatttttgataaatagcttgagacctgtttgaactttgaaccaacctgagtttgaaaaatcagaacaatggc |
207 |
Q |
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| T |
23447678 |
gctcagttgtt---------------tacatttttgataaatagcttgagacctgtttgaactttgaaccaacctgagtttgaaaaatcagaacaatggc |
23447594 |
T |
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| Q |
208 |
tctgtatataacttgaccacaattttcaaaaatgcagtttaatcccaagcttgcgttgtggtaaatagttaagatgtctgccatatcc-ttgttagaagt |
306 |
Q |
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| T |
23447593 |
tctgtatgtaacttgaccacaattttcaaaaatgcagttcaatcccaagcttacgttgtggtaaatagttaaaatgtatgccatatcctttgttagaagt |
23447494 |
T |
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| Q |
307 |
ttgctaataaactttannnnnnnagcgtaggccagtg----annnnnnnnnagggctgcagtgttttggaatactctgtagttcagtgaccaaatcattg |
402 |
Q |
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| T |
23447493 |
ttgctaataagctctatttttttagcctaggccagtgtattttttttttttagtgctgcagtgttttagaatactctgtagttcagtgaccaaatcattg |
23447394 |
T |
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| Q |
403 |
gggaatttcagtaacagtatccatct |
428 |
Q |
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| T |
23447393 |
gggaatttcagtaacagcatccatct |
23447368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 23878242 - 23878275
Alignment:
| Q |
369 |
tggaatactctgtagttcagtgaccaaatcattg |
402 |
Q |
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| T |
23878242 |
tggaatactctgcagttcagtgaccaaatcattg |
23878275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 402
Target Start/End: Complemental strand, 23421099 - 23421059
Alignment:
| Q |
362 |
agtgttttggaatactctgtagttcagtgaccaaatcattg |
402 |
Q |
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| T |
23421099 |
agtgttatggaatactctgcagttcagtgaccaaattattg |
23421059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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