View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6978_low_22 (Length: 399)

Name: NF6978_low_22
Description: NF6978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6978_low_22
NF6978_low_22
[»] chr4 (27 HSPs)
chr4 (1-399)||(29437634-29438037)
chr4 (209-399)||(19602200-19602391)
chr4 (236-381)||(26160265-26160410)
chr4 (236-398)||(33519483-33519645)
chr4 (236-328)||(31859452-31859546)
chr4 (238-399)||(4733157-4733318)
chr4 (215-394)||(13066160-13066342)
chr4 (1-132)||(31859711-31859852)
chr4 (318-399)||(10576993-10577073)
chr4 (236-332)||(22120115-22120212)
chr4 (181-286)||(10576867-10576974)
chr4 (236-375)||(23354039-23354178)
chr4 (41-132)||(20985203-20985294)
chr4 (36-127)||(33519238-33519329)
chr4 (42-112)||(23353832-23353902)
chr4 (236-303)||(12028484-12028552)
chr4 (360-399)||(1695403-1695442)
chr4 (189-391)||(7023735-7023937)
chr4 (314-399)||(15192762-15192842)
chr4 (41-93)||(17187386-17187438)
chr4 (311-391)||(18444733-18444812)
chr4 (236-345)||(21077722-21077831)
chr4 (358-399)||(25314742-25314783)
chr4 (314-399)||(26188283-26188366)
chr4 (8-44)||(17187343-17187379)
chr4 (41-101)||(21077446-21077506)
chr4 (363-399)||(47024251-47024287)
[»] chr2 (24 HSPs)
chr2 (5-399)||(14921588-14921986)
chr2 (197-399)||(25460338-25460535)
chr2 (222-396)||(24188450-24188620)
chr2 (210-361)||(27917560-27917712)
chr2 (236-399)||(18819131-18819294)
chr2 (41-159)||(34063625-34063742)
chr2 (236-399)||(18235811-18235987)
chr2 (238-399)||(17884064-17884224)
chr2 (246-322)||(39732119-39732196)
chr2 (236-346)||(24047785-24047895)
chr2 (236-393)||(21844328-21844485)
chr2 (238-334)||(17862842-17862938)
chr2 (36-160)||(18818910-18819033)
chr2 (238-321)||(31262413-31262497)
chr2 (342-391)||(9504471-9504520)
chr2 (342-391)||(9515837-9515886)
chr2 (236-399)||(21842695-21842858)
chr2 (41-148)||(17414958-17415065)
chr2 (236-329)||(15454070-15454163)
chr2 (363-399)||(30999348-30999384)
chr2 (41-79)||(16593614-16593652)
chr2 (349-399)||(27416760-27416810)
chr2 (264-332)||(21848035-21848104)
chr2 (45-82)||(27417123-27417160)
[»] chr7 (32 HSPs)
chr7 (153-399)||(24596495-24596742)
chr7 (210-396)||(9552570-9552758)
chr7 (210-392)||(9800966-9801150)
chr7 (196-343)||(4829239-4829387)
chr7 (210-396)||(9760524-9760712)
chr7 (236-393)||(5636657-5636814)
chr7 (152-267)||(8606224-8606338)
chr7 (189-399)||(5312278-5312500)
chr7 (236-392)||(22334791-22334948)
chr7 (165-345)||(30405952-30406134)
chr7 (42-145)||(3487164-3487266)
chr7 (41-132)||(24596815-24596905)
chr7 (246-399)||(4091987-4092140)
chr7 (360-399)||(7777592-7777631)
chr7 (1-45)||(23125064-23125108)
chr7 (1-44)||(30405757-30405800)
chr7 (306-399)||(20017506-20017596)
chr7 (358-399)||(18468222-18468263)
chr7 (368-399)||(7493862-7493893)
chr7 (356-399)||(21545355-21545398)
chr7 (236-294)||(3268533-3268591)
chr7 (41-79)||(20017166-20017204)
chr7 (295-361)||(21537083-21537149)
chr7 (1-43)||(21545736-21545778)
chr7 (41-79)||(29544733-29544771)
chr7 (41-82)||(4829001-4829042)
chr7 (41-78)||(7815536-7815573)
chr7 (305-390)||(17880451-17880535)
chr7 (363-399)||(7815886-7815922)
chr7 (363-399)||(9071002-9071038)
chr7 (4-44)||(12358671-12358711)
chr7 (363-399)||(21472359-21472395)
[»] chr3 (26 HSPs)
chr3 (184-399)||(26298177-26298393)
chr3 (194-397)||(18474610-18474816)
chr3 (209-394)||(19542596-19542783)
chr3 (178-393)||(20892054-20892272)
chr3 (215-399)||(11475287-11475471)
chr3 (242-391)||(21828709-21828858)
chr3 (248-362)||(22489614-22489729)
chr3 (236-376)||(22992206-22992347)
chr3 (236-396)||(10342207-10342368)
chr3 (236-361)||(19285549-19285673)
chr3 (236-346)||(33578208-33578318)
chr3 (187-346)||(26387355-26387517)
chr3 (349-397)||(14280791-14280839)
chr3 (41-93)||(19542973-19543025)
chr3 (65-156)||(26297978-26298069)
chr3 (44-117)||(27374274-27374347)
chr3 (41-81)||(18474383-18474423)
chr3 (336-399)||(8401904-8401967)
chr3 (1-44)||(19219119-19219162)
chr3 (353-399)||(22488368-22488414)
chr3 (180-226)||(22493445-22493491)
chr3 (236-294)||(22991074-22991132)
chr3 (41-79)||(25883316-25883354)
chr3 (41-101)||(8402392-8402452)
chr3 (363-399)||(13911871-13911907)
chr3 (41-85)||(19219068-19219112)
[»] chr1 (25 HSPs)
chr1 (193-399)||(21549058-21549264)
chr1 (193-399)||(52270721-52270935)
chr1 (197-399)||(25778148-25778351)
chr1 (1-161)||(26854102-26854271)
chr1 (209-390)||(25665296-25665480)
chr1 (192-399)||(23506183-23506391)
chr1 (184-346)||(26853873-26854036)
chr1 (245-399)||(25730937-25731092)
chr1 (236-399)||(34533082-34533245)
chr1 (236-332)||(27460443-27460540)
chr1 (243-399)||(31314004-31314160)
chr1 (42-122)||(25665590-25665670)
chr1 (315-399)||(50047619-50047702)
chr1 (41-112)||(23505969-23506040)
chr1 (1-161)||(52271027-52271196)
chr1 (293-391)||(26658002-26658096)
chr1 (41-153)||(21548861-21548974)
chr1 (236-332)||(25126900-25126997)
chr1 (350-399)||(30675992-30676041)
chr1 (235-399)||(14744945-14745102)
chr1 (41-79)||(11769857-11769895)
chr1 (342-399)||(11769501-11769558)
chr1 (36-93)||(19257655-19257712)
chr1 (295-399)||(23223890-23223991)
chr1 (360-396)||(12810735-12810771)
[»] chr8 (26 HSPs)
chr8 (187-398)||(11437801-11438013)
chr8 (193-399)||(18771340-18771547)
chr8 (219-399)||(30850553-30850731)
chr8 (1-161)||(11437583-11437753)
chr8 (227-372)||(30544171-30544319)
chr8 (189-399)||(24927355-24927565)
chr8 (295-399)||(13583112-13583216)
chr8 (227-346)||(18786125-18786245)
chr8 (1-161)||(30543924-30544095)
chr8 (1-154)||(13583304-13583471)
chr8 (312-399)||(14184463-14184552)
chr8 (296-383)||(29292366-29292453)
chr8 (41-133)||(5153971-5154063)
chr8 (240-391)||(28074945-28075096)
chr8 (314-396)||(22892743-22892821)
chr8 (236-332)||(5569737-5569833)
chr8 (41-82)||(22894392-22894433)
chr8 (238-322)||(23876395-23876480)
chr8 (236-391)||(24120711-24120866)
chr8 (236-275)||(6887828-6887867)
chr8 (47-98)||(30850944-30850995)
chr8 (42-125)||(32239502-32239585)
chr8 (8-101)||(31436643-31436742)
chr8 (189-304)||(14184326-14184443)
chr8 (299-399)||(23893615-23893712)
chr8 (363-399)||(13304978-13305014)
[»] chr5 (30 HSPs)
chr5 (227-396)||(18281714-18281884)
chr5 (175-347)||(23157337-23157510)
chr5 (237-399)||(16622138-16622300)
chr5 (164-286)||(25368017-25368140)
chr5 (219-391)||(18178575-18178746)
chr5 (236-399)||(7742385-7742548)
chr5 (248-395)||(19763395-19763542)
chr5 (217-396)||(20083929-20084108)
chr5 (243-399)||(20695088-20695244)
chr5 (42-161)||(23157585-23157704)
chr5 (311-399)||(22930492-22930579)
chr5 (41-132)||(19331723-19331814)
chr5 (236-334)||(25681049-25681148)
chr5 (41-87)||(18872907-18872953)
chr5 (305-399)||(25594153-25594246)
chr5 (299-399)||(26329555-26329651)
chr5 (214-397)||(30791045-30791226)
chr5 (236-323)||(17695027-17695115)
chr5 (336-390)||(22643454-22643508)
chr5 (247-399)||(31340851-31341001)
chr5 (41-112)||(19763716-19763787)
chr5 (349-399)||(17381504-17381554)
chr5 (153-275)||(24410546-24410665)
chr5 (366-399)||(18451733-18451766)
chr5 (262-322)||(24846613-24846674)
chr5 (42-79)||(26329933-26329970)
chr5 (363-399)||(12265104-12265140)
chr5 (363-399)||(24268670-24268706)
chr5 (363-399)||(24345300-24345336)
chr5 (42-78)||(30072330-30072366)
[»] scaffold0065 (2 HSPs)
scaffold0065 (195-396)||(12682-12891)
scaffold0065 (41-122)||(12457-12538)
[»] scaffold0337 (2 HSPs)
scaffold0337 (218-396)||(3573-3758)
scaffold0337 (41-122)||(2021-2102)
[»] chr6 (25 HSPs)
chr6 (240-399)||(22262835-22262994)
chr6 (236-346)||(9396154-9396264)
chr6 (250-399)||(16528117-16528266)
chr6 (263-391)||(13830414-13830542)
chr6 (295-397)||(26499356-26499457)
chr6 (152-317)||(28178365-28178531)
chr6 (257-328)||(10976638-10976710)
chr6 (218-325)||(17198379-17198487)
chr6 (4-135)||(26499655-26499795)
chr6 (189-294)||(15318459-15318564)
chr6 (313-399)||(15382214-15382302)
chr6 (236-332)||(32930036-32930133)
chr6 (239-294)||(12971956-12972011)
chr6 (1-44)||(30355480-30355523)
chr6 (365-399)||(30235868-30235902)
chr6 (41-122)||(24507263-24507344)
chr6 (45-112)||(17198652-17198719)
chr6 (313-399)||(15318596-15318682)
chr6 (189-279)||(15349108-15349198)
chr6 (220-294)||(15369135-15369209)
chr6 (313-399)||(15375965-15376051)
chr6 (41-79)||(15575137-15575175)
chr6 (327-399)||(15349259-15349331)
chr6 (218-281)||(15375857-15375920)
chr6 (43-79)||(17860312-17860348)
[»] scaffold0011 (3 HSPs)
scaffold0011 (41-160)||(227969-228088)
scaffold0011 (152-239)||(227818-227905)
scaffold0011 (350-399)||(227698-227747)
[»] scaffold0190 (2 HSPs)
scaffold0190 (210-399)||(11166-11355)
scaffold0190 (41-93)||(11548-11599)
[»] scaffold0386 (2 HSPs)
scaffold0386 (236-399)||(8230-8393)
scaffold0386 (236-399)||(11260-11423)
[»] scaffold1149 (2 HSPs)
scaffold1149 (41-121)||(2000-2080)
scaffold1149 (226-283)||(2246-2301)
[»] scaffold0650 (2 HSPs)
scaffold0650 (314-399)||(5235-5316)
scaffold0650 (1-44)||(5678-5720)
[»] scaffold0185 (1 HSPs)
scaffold0185 (41-132)||(2713-2804)
[»] scaffold0362 (1 HSPs)
scaffold0362 (363-399)||(8236-8272)
[»] scaffold0836 (1 HSPs)
scaffold0836 (44-106)||(2824-2886)
[»] scaffold0100 (1 HSPs)
scaffold0100 (367-399)||(37568-37600)
[»] scaffold0043 (1 HSPs)
scaffold0043 (41-117)||(58963-59038)


Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 29437634 - 29438037
Alignment:
Q  1 aaggatcgaggatatgaagattgaagttcaatagttcttagaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaaga 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  29437634 aaggatcgaggatatgaagattgaagttcaatggttcttagaagacaatacaaagtgaagaaacttcatttgaagttccaaggcatcgcaagacagaaga 29437733  T
Q  101 acgcttgaaaaatggtcgaaaactgcagaatttgcgcaagaggggatgcctcatgcgccccacgcatggac----acagggaggaagtgatgtttgcttg 196  Q
    ||||||||||||||||| ||||||| |||||||| ||| ||||||||||||||||||||||||||||||||    || |||||||||||| |||||||||    
T  29437734 acgcttgaaaaatggtcaaaaactgtagaatttgtgcaggaggggatgcctcatgcgccccacgcatggacacggacggggaggaagtgacgtttgcttg 29437833  T
Q  197 ttttccaagccgtttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-a 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  29437834 ttttccaagccgtttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtattca 29437933  T
Q  296 ttcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctat 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  29437934 ttcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttatctctagggtatgtttttctat 29438033  T
Q  396 tgtt 399  Q
    ||||    
T  29438034 tgtt 29438037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 209 - 399
Target Start/End: Original strand, 19602200 - 19602391
Alignment:
Q  209 tttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaacta 307  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||| |||||||| | || ||||||||| |||    
T  19602200 tttttggtggaaaacccctattttcactctcttaaccccgaagtaatcatgcattataaatagagacccttgtacactctttttttcattcagaaagcta 19602299  T
Q  308 gtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgtt 399  Q
    | ||||||||||||||| ||||||| | |||||||||||  |||||| || ||||| || ||||| |||| |||||||||||||||||||||    
T  19602300 gcggtacaaggcaagggccaagcatcaggagcttcaaggcagaggatttctatcatccttttgttatctcgagggtatgtttttctattgtt 19602391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 236 - 381
Target Start/End: Original strand, 26160265 - 26160410
Alignment:
Q  236 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcatta 334  Q
    ||||||||||| |||||||| |||| |||||||||||||||||||||||||||| |||| ||||||||| |||| |||||||| ||||| || |||| ||    
T  26160265 tctcttaacccataagtaattatgccctataaatagagactcttgcacactcttttattcattcagaaagctagcggtacaagacaaggatctagca-ta 26160363  T
Q  335 agagcttcaaggacgaggatctccatcattctcttgttctctctagg 381  Q
    |||||||||||   || ||||| |||| | |||||||||||||||||    
T  26160364 agagcttcaagtcagatgatctacatcctcctcttgttctctctagg 26160410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 236 - 398
Target Start/End: Original strand, 33519483 - 33519645
Alignment:
Q  236 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcatta 334  Q
    |||| |||||||||| |||| ||  |||||||||| |||| ||||||||||||| |||| ||||||||| ||||  ||| |||||||||||||| || |     
T  33519483 tctcgtaacccctaattaatgatatactataaataaagacccttgcacactcttttattcattcagaaatctagcagtataaggcaagggtcaaaca-tc 33519581  T
Q  335 agagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgt 398  Q
    ||||||||||||   | ||| || ||||| || ||||||||||| |||||| ||||||||||||    
T  33519582 agagcttcaaggcaaaagatatctatcatccttttgttctctcttgggtatatttttctattgt 33519645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 236 - 328
Target Start/End: Complemental strand, 31859546 - 31859452
Alignment:
Q  236 tctcttaacccctaagtaatcatgcac-tataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaa 328  Q
    |||||||||||||||||||| |||||| ||||| ||||||| ||||||||||||| |||| ||||||||||||||  |||||||||| |||||||    
T  31859546 tctcttaacccctaagtaatgatgcacttataagtagagacccttgcacactcttttattcattcagaaaactagatgtacaaggcaggggtcaa 31859452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 238 - 399
Target Start/End: Original strand, 4733157 - 4733318
Alignment:
Q  238 tcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaag 336  Q
    ||||||| ||||| |||| ||| |||||||||||| || |||| ||||| || |||| | ||||||| ||| | ||||||| |||||||||| | ||| |    
T  4733157 tcttaacacctaaataatgatgtactataaatagaaacccttggacactgttttattcaatcagaaagctactagtacaagacaagggtcaaacgtta-g 4733255  T
Q  337 agcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgtt 399  Q
    ||||||||||  || |||||||||| |  | ||||||| |||| |||||||||||||||||||    
T  4733256 agcttcaaggcagatgatctccatcctcttgttgttctttctaaggtatgtttttctattgtt 4733318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 215 - 394
Target Start/End: Original strand, 13066160 - 13066342
Alignment:
Q  215 gtggaaaaaccctattttcactctcttaacc-cctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggt 312  Q
    |||||||||| |||||||  |||||||| || || ||||||||||  |||||||||||||||||||||  ||| || |||| |||||||||  ||| |||    
T  13066160 gtggaaaaactctattttacctctcttacccgccaaagtaatcataaactataaatagagactcttgcgtactattttattcattcagaaagttagcggt 13066259  T
Q  313 acaaggcaagggtcaagcattaa-gagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttcta 394  Q
    | |||||||| |||||  || || || ||||||||   |||||||||||| |  | ||||||| |||||||||||||||||||    
T  13066260 ataaggcaagagtcaaatatcaaggatcttcaaggcataggatctccatcctcgttttgttctttctagggtatgtttttcta 13066342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 31859852 - 31859711
Alignment:
Q  1 aaggatcgaggatatgaagattgaagttcaatagttcttagaag----------acaatacaaagtgaagaaacttcatttgaagttccaagacatcgca 90  Q
    |||||||||||||||||| ||||||| ||||| |||||||||||          ||||||||||||||||||| || |||| |||||||||| |||  ||    
T  31859852 aaggatcgaggatatgaatattgaagatcaatggttcttagaaggtatttgaagacaatacaaagtgaagaaaatttatttcaagttccaaggcatttca 31859753  T
Q  91 agatagaagaacgcttgaaaaatggtcgaaaactgcagaatt 132  Q
    |||  ||||||||| ||||||| || ||||||||||| ||||    
T  31859752 agacggaagaacgcgtgaaaaaaggacgaaaactgcaaaatt 31859711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 318 - 399
Target Start/End: Original strand, 10576993 - 10577073
Alignment:
Q  318 gcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgtt 399  Q
    ||||||||||||||| | |||||| ||||| |||||||||| || | ||||||| ||||||||||||||||||| |||||||    
T  10576993 gcaagggtcaagcatca-gagcttgaaggaagaggatctccctcctcctcttgtcctctctagggtatgtttttatattgtt 10577073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 236 - 332
Target Start/End: Original strand, 22120115 - 22120212
Alignment:
Q  236 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcat 332  Q
    |||||||||||||||||||| ||| ||   |||||||||| ||||||||| | | |||| |||||||| |||||  ||||||||||||||||||||||    
T  22120115 tctcttaacccctaagtaatgatgtacccaaaatagagacccttgcacacacatttattcattcagaatactagctgtacaaggcaagggtcaagcat 22120212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 181 - 286
Target Start/End: Original strand, 10576867 - 10576974
Alignment:
Q  181 aagtgatgtttgcttgttttccaagccgtttt--tggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactct 278  Q
    ||||| |||||||||||||||||||| | |||  ||| || |||| || |||||   ||||||||||| |||||| | ||||||||||||||||||| ||    
T  10576867 aagtgttgtttgcttgttttccaagctgatttggtggggggaaaatcccatttttcttctcttaacccgtaagtatttatgcactataaatagagaccct 10576966  T
Q  279 tgcacact 286  Q
    ||||||||    
T  10576967 tgcacact 10576974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 236 - 375
Target Start/End: Original strand, 23354039 - 23354178
Alignment:
Q  236 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcatta 334  Q
    |||||||||||||||||||| ||| | |||||||| ||||||| ||| |||||| |||| ||||||||| | |   ||||||||||| |||||| || |     
T  23354039 tctcttaacccctaagtaatgatgtattataaataaagactctcgcaaactcttttattcattcagaaagccaacagtacaaggcaaaggtcaaaca-tc 23354137  T
Q  335 agagcttcaaggacgaggatctccatcattctcttgttctc 375  Q
    |||||||||| |  ||||||||||||| |  ||||||||||    
T  23354138 agagcttcaaagcagaggatctccatcctcatcttgttctc 23354178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 41 - 132
Target Start/End: Complemental strand, 20985294 - 20985203
Alignment:
Q  41 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaactgcagaatt 132  Q
    |||||||||||||||||||||||  ||||||||| || |||||||  ||| ||  ||| ||||||||||||  ||||||||| |||||||||    
T  20985294 gaagacaatacaaagtgaagaaaactcatttgaaatttcaagacaatgcatgacggaaaaacgcttgaaaatgggtcgaaaattgcagaatt 20985203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 127
Target Start/End: Original strand, 33519238 - 33519329
Alignment:
Q  36 tcttagaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaactgca 127  Q
    |||| |||||||||||||  |||||||| ||||||| || ||||||| |||  | ||| ||||||||||||||||||||| |||||| ||||    
T  33519238 tctttgaagacaatacaagttgaagaaaattcatttcaaattccaaggcatttccagacagaagaacgcttgaaaaatggacgaaaattgca 33519329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 42 - 112
Target Start/End: Original strand, 23353832 - 23353902
Alignment:
Q  42 aagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaa 112  Q
    |||||||||||||||||||||| ||||||| |||||||||| ||| |||| | |||| |||||| ||||||    
T  23353832 aagacaatacaaagtgaagaaaattcatttcaagttccaaggcattgcaaaacagaaaaacgctcgaaaaa 23353902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 236 - 303
Target Start/End: Complemental strand, 12028552 - 12028484
Alignment:
Q  236 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaa 303  Q
    ||||||||| |  ||||||  ||||||||||||||||||||||||||||||||| |||| |||||||||    
T  12028552 tctcttaactcacaagtaaagatgcactataaatagagactcttgcacactcttttattcattcagaaa 12028484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 360 - 399
Target Start/End: Complemental strand, 1695442 - 1695403
Alignment:
Q  360 tcattctcttgttctctctagggtatgtttttctattgtt 399  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  1695442 tcattctcttgttctctcgagggtatgtttttctattgtt 1695403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 189 - 391
Target Start/End: Complemental strand, 7023937 - 7023735
Alignment:
Q  189 tttgcttgttttccaagccgtttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactct 288  Q
    ||||||||||||||||||  ||||| |||||||| ||  | ||||| ||||| |||||||| | | | |||||||| ||||||||||  |||||||| ||    
T  7023937 tttgcttgttttccaagctatttttagtggaaaatcctaaatttca-tctctaaacccctatgcagtgatgcactaaaaatagagaccattgcacacgct 7023839  T
Q  289 tgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgt 387  Q
    | |||| ||| |||||  |||   ||||||| |||||||||| |  | |||||||| ||  || |||||||||| | || | ||| ||||||| ||||||    
T  7023838 tttattcattgagaaagttagcaatacaaggaaagggtcaagtaccaggagcttcatggcagatgatctccatcctcctttcgttttctctagtgtatgt 7023739  T
Q  388 tttt 391  Q
    ||||    
T  7023738 tttt 7023735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 399
Target Start/End: Original strand, 15192762 - 15192842
Alignment:
Q  314 caaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgtt 399  Q
    ||||||||||||||||||||| ||||||||||||  |||||   | || ||||||||||||||| ||||| |||||||||||||||    
T  15192762 caaggcaagggtcaagcatta-gagcttcaagga--aggatt--cttcgttctcttgttctctccagggtgtgtttttctattgtt 15192842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 17187386 - 17187438
Alignment:
Q  41 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaaga 93  Q
    |||||||||||||||| |||||| ||||||| ||||| |||||||| ||||||    
T  17187386 gaagacaatacaaagtaaagaaaattcatttcaagtttcaagacattgcaaga 17187438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 391
Target Start/End: Original strand, 18444733 - 18444812
Alignment:
Q  311 gtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgttttt 391  Q
    |||||||| |||||||||| || | ||| |||||||  ||||||||||||| | |||||||||||  ||||||||||||||    
T  18444733 gtacaaggaaagggtcaagaatca-gagtttcaaggcggaggatctccatcctcctcttgttctcattagggtatgttttt 18444812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 345
Target Start/End: Original strand, 21077722 - 21077831
Alignment:
Q  236 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcatta 334  Q
    |||||||||||||||||||| ||  ||||||||||||||| ||||  |||| |  |||| ||||| ||| |||| | ||||||| ||||||||| || |     
T  21077722 tctcttaacccctaagtaatgatctactataaatagagacccttgtccactatcttattcattcaaaaagctagcgatacaaggtaagggtcaatca-tc 21077820  T
Q  335 agagcttcaag 345  Q
    |||||||||||    
T  21077821 agagcttcaag 21077831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 399
Target Start/End: Complemental strand, 25314783 - 25314742
Alignment:
Q  358 catcattctcttgttctctctagggtatgtttttctattgtt 399  Q
    ||||||| | ||||||| ||||||||||||||||||||||||    
T  25314783 catcattttattgttctgtctagggtatgtttttctattgtt 25314742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 399
Target Start/End: Original strand, 26188283 - 26188366
Alignment:
Q  314 caaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgtt 399  Q
    ||||||||| ||||||||| | ||| | |||||  |||||||| |||| | |||||||||||| ||||||||| ||||||||||||    
T  26188283 caaggcaagagtcaagcatca-gagttccaaggcagaggatcttcatcctcctcttgttctctatagggtatg-ttttctattgtt 26188366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 17187343 - 17187379
Alignment:
Q  8 gaggatatgaagattgaagttcaatagttcttagaag 44  Q
    ||||||||||||||||||||||| | |||||||||||    
T  17187343 gaggatatgaagattgaagttcagtggttcttagaag 17187379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 21077446 - 21077506
Alignment:
Q  41 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaa 101  Q
    |||||||||||||| |||| ||| ||||||| |||||||||| ||| | ||||| ||||||    
T  21077446 gaagacaatacaaattgaataaaattcatttcaagttccaaggcattgaaagatggaagaa 21077506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 399
Target Start/End: Complemental strand, 47024287 - 47024251
Alignment:
Q  363 ttctcttgttctctctagggtatgtttttctattgtt 399  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  47024287 ttctcttgttctctctaaggtatatttttctattgtt 47024251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 5 - 399
Target Start/End: Complemental strand, 14921986 - 14921588
Alignment:
Q  5 atcgaggatatgaagattgaagttcaatagttcttagaag----------acaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagat 94  Q
    |||||||||||||||||||||||||||| |||||||||||          |||||||||||||||||||  ||||||||| ||||||| |||| |||||     
T  14921986 atcgaggatatgaagattgaagttcaatggttcttagaaggtatatgtagacaatacaaagtgaagaaaaatcatttgaatttccaaggcatcacaagac 14921887  T
Q  95 agaagaacgcttgaaaaatggtcgaaaactgcagaatttgcgcaagaggggatgcctcatgcgcccc-acgcatggacacagggaggaagtgatgtttgc 193  Q
    |||||||||||||||||| ||| |||||||||| |||| ||||| |||||| |||||||||||||||  ||||| ||||  || ||| |||| |||||||    
T  14921886 agaagaacgcttgaaaaagggttgaaaactgcataattcgcgcaggaggggctgcctcatgcgcccctgcgcattgacaagggtagggagtgttgtttgc 14921787  T
Q  194 ttgttttccaagccgtttttggtgg---aaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttg 290  Q
    ||||||||||| || ||||| ||||   |||||  |||||||||||||||||| || ||||||||||| |||||||          |||||||||||||     
T  14921786 ttgttttccaatcctttttttgtgggaaaaaaaatctattttcactctcttaatccttaagtaatcattcactata---------ccttgcacactcttt 14921696  T
Q  291 tatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgttt 389  Q
     ||| ||||||||  |||| |||| ||||||| |||||| ||| | ||| |||||||  |||||  |||||| |||| ||||||||||||||||||||||    
T  14921695 gattcattcagaaggctagcggtaaaaggcaaaggtcaatcatcacgagtttcaaggcagagga--tccatccttctattgttctctctagggtatgttt 14921598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 197 - 399
Target Start/End: Original strand, 25460338 - 25460535
Alignment:
Q  197 ttttccaagccgtttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgta-tta 295  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||  || |||| |||| || |||    
T  25460338 tttttcaagctgtttttggtggaaaaaccctattttcactctcttaatccctaagtaatcatacactataaatagagaccttttcacaatcttttattta 25460437  T
Q  296 ttcagaaaactagt-ggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttcta 394  Q
    |||||||| ||| | ||||||||||||||||||| ||| | |||   |||     ||||| |||| ||| |||||||||||||||| |||||||||||||    
T  25460438 ttcagaaagctaatgggtacaaggcaagggtcaaacatcaggag--gcaa-----aggatatccaccatcctcttgttctctctagtgtatgtttttcta 25460530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 222 - 396
Target Start/End: Original strand, 24188450 - 24188620
Alignment:
Q  222 aaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtattattcagaaaactagtggtacaaggcaa 321  Q
    |||| |||||||||||||||||||||| ||||||||| ||| |||||||||||| |||||| ||| ||     ||||| ||| |||| ||||||||||||    
T  24188450 aaccttattttcactctcttaacccctgagtaatcatacacaataaatagagacccttgcatactattc----attcaaaaagctagcggtacaaggcaa 24188545  T
Q  322 gggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctatt 396  Q
    |||||||| ||||||||||||| ||| |||||||| |||| | ||| | ||||||||||||| ||||||||||||    
T  24188546 gggtcaaggattaagagcttcacggaagaggatcttcatcttactcatattctctctagggtgtgtttttctatt 24188620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 210 - 361
Target Start/End: Complemental strand, 27917712 - 27917560
Alignment:
Q  210 ttttggtggaaaaa-ccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaacta 307  Q
    |||||||||||||| ||||| |||  ||| |||||| || ||||||||||| ||||||| ||||||| |||||||||| || |||| ||||||||| |||    
T  27917712 ttttggtggaaaaaaccctaattttgctcccttaactccgaagtaatcatggactataa-tagagacccttgcacactattttattcattcagaaagcta 27917614  T
Q  308 gtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatc 361  Q
    | ||||||||||||||||||||||| | |||||||| ||  |||||||||||||    
T  27917613 gcggtacaaggcaagggtcaagcatcaggagcttcatggtagaggatctccatc 27917560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 236 - 399
Target Start/End: Original strand, 18819131 - 18819294
Alignment:
Q  236 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgta-ttattcagaaaactagtggtacaaggcaagggtcaagcatta 334  Q
    ||||||||| |||||||||| ||| | ||||||||||||| |||||| |||||| || ||||||||||| |||  |||||||||||| |||||| ||| |    
T  18819131 tctcttaactcctaagtaatgatgtattataaatagagacccttgcaaactcttttatttattcagaaagctaacggtacaaggcaatggtcaaacatca 18819230  T
Q  335 agagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgtt 399  Q
    | |||||| ||   ||||||||| ||| | ||||||||||  |||||||||||||||||||||||    
T  18819231 a-agcttccagacagaggatctctatcctcctcttgttcttactagggtatgtttttctattgtt 18819294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 41 - 159
Target Start/End: Complemental strand, 34063742 - 34063625
Alignment:
Q  41 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaactgcagaatttgcgcaag 140  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||| |  |||  |||||||||| ||||||| ||||||||||||| |||||| ||| |    
T  34063742 gaagacaatacaaagtgaagaaaattcatttgaagttccaaggcattgtgagacggaagaacgctagaaaaat-gtcgaaaactgcataatttgtgcagg 34063644  T
Q  141 aggggatgcctcatgcgcc 159  Q
    || || |||||||||||||    
T  34063643 agaggctgcctcatgcgcc 34063625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 236 - 399
Target Start/End: Complemental strand, 18235987 - 18235811
Alignment:
Q  236 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-------------attcagaaaactagtggtacaaggcaag 322  Q
    |||||||||||||||||||| ||||| |||| ||||||||||||| |||| ||| ||||             || |||||| |||| ||||||||| |||    
T  18235987 tctcttaacccctaagtaatgatgcattatagatagagactcttgtacacacttttattcatttagaaaagcatacagaaagctagcggtacaaggtaag 18235888  T
Q  323 ggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgtt 399  Q
    |||||||||| ||||| || ||||| ||||||||||||| |  |||| ||||||||| |||||||||||||||||||    
T  18235887 ggtcaagcatcaagagatttaaggaagaggatctccatcctcttcttattctctctatggtatgtttttctattgtt 18235811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 238 - 399
Target Start/End: Complemental strand, 17884224 - 17884064
Alignment:
Q  238 tcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaag 336  Q
    |||||| | ||||||||| ||| |||||||||||||||  |||||||  ||| |||| ||| ||||| ||||| |||||||||||||||||||||| | |    
T  17884224 tcttaaactctaagtaattatg-actataaatagagaccattgcacatacttttattcatttagaaagctagtagtacaaggcaagggtcaagcatca-g 17884127  T
Q  337 agcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgtt 399  Q
    || |||||||  |||||| ||  |||| ||||||| || ||||||||||||||||||||||||    
T  17884126 agattcaaggcagaggatttctgtcatcctcttgtcctttctagggtatgtttttctattgtt 17884064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 246 - 322
Target Start/End: Original strand, 39732119 - 39732196
Alignment:
Q  246 cctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaag 322  Q
    |||||||||| ||||||||||||||||||||||| ||||| ||| |||| ||||||||| |||| |||||||||||||    
T  39732119 cctaagtaatgatgcactataaatagagactctttcacacacttttattcattcagaaagctagcggtacaaggcaag 39732196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 236 - 346
Target Start/End: Original strand, 24047785 - 24047895
Alignment:
Q  236 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcatta 334  Q
    |||||||| ||||||||||| |||||||||||||||||| |||||||||| ||  |||| ||| ||||| ||||||||| |||| ||| | |||||| |     
T  24047785 tctcttaaaccctaagtaatgatgcactataaatagagattcttgcacacactcttattcattgagaaagctagtggtataaggaaagagccaagca-tc 24047883  T
Q  335 agagcttcaagg 346  Q
    ||||||||||||    
T  24047884 agagcttcaagg 24047895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 236 - 393
Target Start/End: Complemental strand, 21844485 - 21844328
Alignment:
Q  236 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgta-ttattcagaaaactagtggtacaaggcaagggtcaagcatta 334  Q
    |||||||| ||||||||||| || || |||||||||| || | ||||||| ||| || |||||||| || |||| ||| ||||||| |||||||||| |     
T  21844485 tctcttaaaccctaagtaataattcaatataaatagaaacccctgcacacacttttatttattcagtaagctagcggttcaaggcatgggtcaagca-tc 21844387  T
Q  335 agagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttct 393  Q
    ||||||||||||  |||||| | |||  | |||| ||||||| |||||| |||||||||    
T  21844386 agagcttcaaggcagaggatttacatgctcctctcgttctctttagggtttgtttttct 21844328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 238 - 334
Target Start/End: Original strand, 17862842 - 17862938
Alignment:
Q  238 tcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcatta 334  Q
    |||||| || |||||||| |||||||||||||| ||||| |||||||| ||| |||| |||||| ||  |||||||||||||||||||||| ||||||    
T  17862842 tcttaaaccttaagtaatgatgcactataaatatagacttttgcacacacttttattcattcag-aagttagtggtacaaggcaagggtcaggcatta 17862938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 36 - 160
Target Start/End: Original strand, 18818910 - 18819033
Alignment:
Q  36 tcttagaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaactgcagaatttgc 135  Q
    |||| ||||||||||||||||||||||| |||| || |||||||||||||| ||||||  |||||| || | ||||| ||  |||||||||| |||| ||    
T  18818910 tctttgaagacaatacaaagtgaagaaaattcaattcaagttccaagacattgcaagacggaagaatgc-tcaaaaagggatgaaaactgcaaaattcgc 18819008  T
Q  136 gcaagaggggatgcctcatgcgccc 160  Q
     |||||||    |||||||||||||    
T  18819009 acaagaggcaccgcctcatgcgccc 18819033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 238 - 321
Target Start/End: Original strand, 31262413 - 31262497
Alignment:
Q  238 tcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaa 321  Q
    ||||| |||||||||||| ||||||||||||||||||| |||| |||||||| |||| ||| ||||| |||  ||||||||||||    
T  31262413 tcttatcccctaagtaatgatgcactataaatagagacacttgtacactcttttattcatttagaaatctaacggtacaaggcaa 31262497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 9504471 - 9504520
Alignment:
Q  342 caaggacgaggatctccatcattctcttgttctctctagggtatgttttt 391  Q
    |||||| ||||||||||||| | |||||||||||||||||||||||||||    
T  9504471 caaggaagaggatctccatcctcctcttgttctctctagggtatgttttt 9504520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 9515837 - 9515886
Alignment:
Q  342 caaggacgaggatctccatcattctcttgttctctctagggtatgttttt 391  Q
    |||||| ||||||||||||| | |||||||||||||||||||||||||||    
T  9515837 caaggaagaggatctccatcctcctcttgttctctctagggtatgttttt 9515886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 236 - 399
Target Start/End: Complemental strand, 21842858 - 21842695
Alignment:
Q  236 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcatta 334  Q
    |||||||| ||||||||||| || || |||||| ||| || |||||| || ||| |||| ||||||||| |||| ||| ||||||| || ||||||| |     
T  21842858 tctcttaaaccctaagtaataattcaatataaacagaaacccttgcatacacttttatttattcagaaagctagaggttcaaggcatggttcaagca-tc 21842760  T
Q  335 agagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgtt 399  Q
    ||||||||||||  || ||| | |||  | |||| ||||||| ||||||||| |||| |||||||    
T  21842759 agagcttcaaggcagatgatttacatgctcctctcgttctctttagggtatgcttttatattgtt 21842695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 148
Target Start/End: Complemental strand, 17415065 - 17414958
Alignment:
Q  41 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaactgcagaatttgcgcaag 140  Q
    |||||||| | |||||||||||| ||||||| |||||| ||||||| ||||||  ||||||||||  ||||| || | |||||| || |||| || || |    
T  17415065 gaagacaacaaaaagtgaagaaaattcatttcaagttctaagacattgcaagacggaagaacgctcaaaaaagggacaaaaactacataattcgcacagg 17414966  T
Q  141 aggggatg 148  Q
    ||||||||    
T  17414965 aggggatg 17414958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 329
Target Start/End: Complemental strand, 15454163 - 15454070
Alignment:
Q  236 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaag 329  Q
    |||||||| ||||||||||| ||| ||||||||| ||||| ||||||||| ||| |||| ||| ||||| |||| |||||||| ||| |||||||    
T  15454163 tctcttaaaccctaagtaatgatgaactataaatcgagacccttgcacacactt-tattcatttagaaacctaggggtacaagacaatggtcaag 15454070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 30999348 - 30999384
Alignment:
Q  363 ttctcttgttctctctagggtatgtttttctattgtt 399  Q
    |||| ||||||||||||||||||||||||||||||||    
T  30999348 ttcttttgttctctctagggtatgtttttctattgtt 30999384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 79
Target Start/End: Complemental strand, 16593652 - 16593614
Alignment:
Q  41 gaagacaatacaaagtgaagaaacttcatttgaagttcc 79  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  16593652 gaagacaatacaaagtgaagaaaattcatttcaagttcc 16593614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 399
Target Start/End: Complemental strand, 27416810 - 27416760
Alignment:
Q  349 gaggatctccatcattctcttgttctctctagggtatgtttttctattgtt 399  Q
    ||||||||||||| | ||||||||||||||  |||||| ||||||||||||    
T  27416810 gaggatctccatcctcctcttgttctctctgaggtatgcttttctattgtt 27416760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 332
Target Start/End: Complemental strand, 21848104 - 21848035
Alignment:
Q  264 ataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcat 332  Q
    |||||||||||||||||||||| ||| |||| |||||||  | |||| ||||||| ||||| ||||||||    
T  21848104 ataaatagagactcttgcacacacttttattcattcagattagtagtagtacaagacaaggttcaagcat 21848035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 27417160 - 27417123
Alignment:
Q  45 acaatacaaagtgaagaaacttcatttgaagttccaag 82  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  27417160 acaatacaaagtgaagaaaattcatttcaagttccaag 27417123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 120; Significance: 3e-61; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 153 - 399
Target Start/End: Complemental strand, 24596742 - 24596495
Alignment:
Q  153 atgcgccccacgcatggacacagggaggaagtgatgtttgcttgttttccaagccgtttttggtggaaaaaccctattttcactctcttaacccctaagt 252  Q
    ||||||||  |||||||||||||  |  ||||| ||||||||||||||||||||| ||||||||||||||  |||||||||||| ||||||||| ||  |    
T  24596742 atgcgccctgcgcatggacacagacattaagtgttgtttgcttgttttccaagccatttttggtggaaaactcctattttcactatcttaacccgtatat 24596643  T
Q  253 aatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgag 351  Q
    ||||||||| |||||||||||||  |||||||||||| |||| ||||||||| ||  |||||||||||||||||||||||| | |||||||||||  ||     
T  24596642 aatcatgcattataaatagagaccattgcacactcttttattcattcagaaagctgatggtacaaggcaagggtcaagcatcaggagcttcaaggcagat 24596543  T
Q  352 gatctccatcattctcttgttctctctagggtatgtttttctattgtt 399  Q
    |||||| ||||| |||||||||||||||| |||||||||| |||||||    
T  24596542 gatctctatcatcctcttgttctctctagtgtatgtttttatattgtt 24596495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 210 - 396
Target Start/End: Original strand, 9552570 - 9552758
Alignment:
Q  210 ttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactag 308  Q
    |||||||| |||||||||||||||||||||| |||||||||| || | || |||| ||||||||||  |||||||| |||  | | |||||||||||||     
T  9552570 ttttggtgtaaaaaccctattttcactctctcaacccctaagaaaccttgaactacaaatagagaccgttgcacacactttaactcattcagaaaactaa 9552669  T
Q  309 tggta-caaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctatt 396  Q
     |||  ||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  9552670 cggtggcaaggcaagggtcaagcatcaagagcttcaaggaagaggatctccatcatcctcttgttctctctagggtatatttttctatt 9552758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 210 - 392
Target Start/End: Original strand, 9800966 - 9801150
Alignment:
Q  210 ttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactag 308  Q
    ||||||||||||| |||||||||||||||||||||||||||| || | || |||||||||||||||  ||||| || |||  | | ||||| ||||||||    
T  9800966 ttttggtggaaaacccctattttcactctcttaacccctaagaaaccttgaactataaatagagaccgttgcatacactttaactcattcaaaaaactag 9801065  T
Q  309 tggta-caaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttc 392  Q
     |||  ||||||||||||||||||| |||||||| ||||| ||||||||||||| | ||||||||||||||||||| ||||||||    
T  9801066 cggtggcaaggcaagggtcaagcatcaagagctttaaggaagaggatctccatcctcctcttgttctctctagggtgtgtttttc 9801150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 196 - 343
Target Start/End: Original strand, 4829239 - 4829387
Alignment:
Q  196 gttttccaagccgtttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt- 294  Q
    ||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||| ||||||||||| |||||| | || ||||     
T  4829239 gttttccaagttgtttttggtggaaaaactctattttcactctcttaacccctaagtagtcatccactatgaatagagactcatgcacattattttattc 4829338  T
Q  295 attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttca 343  Q
    ||| ||||| |||| ||||||||||||||||||||||| |||| |||||    
T  4829339 atttagaaagctagcggtacaaggcaagggtcaagcatcaagatcttca 4829387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 210 - 396
Target Start/End: Original strand, 9760524 - 9760712
Alignment:
Q  210 ttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactag 308  Q
    ||||||||||||| |||||||||||||||||||||||||||| || | || |||||||||||||||  ||||| || |||  | | ||||| ||||||||    
T  9760524 ttttggtggaaaacccctattttcactctcttaacccctaagaaaccttgaactataaatagagaccgttgcatacactttaactcattcaaaaaactag 9760623  T
Q  309 tggta-caaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctatt 396  Q
     |||  |||| |||||||||| ||| |||||||||||||| ||||||||||||| | || |||||||||||| ||||||||||||||||    
T  9760624 gggtggcaagacaagggtcaaccatcaagagcttcaaggaagaggatctccatcctcctattgttctctctaaggtatgtttttctatt 9760712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 236 - 393
Target Start/End: Original strand, 5636657 - 5636814
Alignment:
Q  236 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcatta 334  Q
    |||||||| | ||||||||| ||||||||||||||||||| ||||||||| ||| |||| ||||||||| ||||| ||||||||||| |||||||||| |    
T  5636657 tctcttaatcactaagtaatgatgcactataaatagagacccttgcacacacttttattcattcagaaagctagtagtacaaggcaatggtcaagcatca 5636756  T
Q  335 agagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttct 393  Q
    | ||||||||||  || |||||||| | | ||||||||||||||||||||| |||||||    
T  5636757 a-agcttcaaggcagatgatctccaacctcctcttgttctctctagggtatttttttct 5636814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 152 - 267
Target Start/End: Original strand, 8606224 - 8606338
Alignment:
Q  152 catgcgccccacgcatggacacagggaggaagtgatgtttgcttgttttccaagccgtttttggtggaaaaaccctattttcactctcttaacccctaag 251  Q
    ||||||||| ||||||||||||| | ||||| || |||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||| |    
T  8606224 catgcgccctacgcatggacacacgaaggaaatgttgtttgcttgttttccaaaccgtttttggtgg-aaaactctattttcactctcttaacccctatg 8606322  T
Q  252 taatcatgcactataa 267  Q
    || |||||||||||||    
T  8606323 tattcatgcactataa 8606338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 189 - 399
Target Start/End: Complemental strand, 5312500 - 5312278
Alignment:
Q  189 tttgcttgttttccaagccgtttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactct 288  Q
    |||||||||||||||||  |||||| |||||||| ||  |||||||| ||||||||||||||||||| ||| |||||||| ||||||||||||||||  |    
T  5312500 tttgcttgttttccaagttgtttttagtggaaaacccaaattttcac-ctcttaacccctaagtaatgatgtactataaacagagactcttgcacacatt 5312402  T
Q  289 tgtatt-------------attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctc 375  Q
    | ||||             ||| ||||| |||||||||||||||||| ||||| ||| | ||| |||||||   | |||||||||| | |||||||||||    
T  5312401 tttattcattccgaaaagcattgagaaagctagtggtacaaggcaagagtcaaacataaggagtttcaaggtataagatctccatcctcctcttgttctc 5312302  T
Q  376 tctagggtatgtttttctattgtt 399  Q
    ||||||||||||||||| ||||||    
T  5312301 tctagggtatgtttttcaattgtt 5312278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 236 - 392
Target Start/End: Complemental strand, 22334948 - 22334791
Alignment:
Q  236 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatta-ttcagaaaactagtggtacaaggcaagggtcaagcatta 334  Q
    |||||||||||||||||||| |||||||||||||| |||   ||| |||||||| ||||| |||||||| |||||||||||||||||||||||||||| |    
T  22334948 tctcttaacccctaagtaatgatgcactataaataaagatcattgaacactcttttattaattcagaaagctagtggtacaaggcaagggtcaagcatca 22334849  T
Q  335 agagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttc 392  Q
    ||| |||  |||  ||||||||||||  | |||||| ||| |||| | ||||||||||    
T  22334848 agaactttcaggcagaggatctccattctcctcttggtctttctaagatatgtttttc 22334791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 165 - 345
Target Start/End: Original strand, 30405952 - 30406134
Alignment:
Q  165 catggacacagggaggaagtgatgtttgcttgttttccaagccgtttttggtggaa-aaaccctattttcactctcttaacccctaagtaatcatgcact 263  Q
    ||||||||| || ||| |||| |||||||||||||||||||| |||||| ||| |  |||||||||||||||||||||||   ||| |||||||| ||||    
T  30405952 catggacacgggtagggagtgttgtttgcttgttttccaagctgttttttgtgaaggaaaccctattttcactctcttaattgctatgtaatcatacact 30406051  T
Q  264 ataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaag 345  Q
    ||||||||| || ||||||||  ||| |||| ||||| ||| |||| ||||||||| ||  ||||||||| | |||| |||||    
T  30406052 ataaatagaaacccttgcacaaacttttattcattcataaagctagcggtacaaggtaatagtcaagcatcaggagcatcaag 30406134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 42 - 145
Target Start/End: Complemental strand, 3487266 - 3487164
Alignment:
Q  42 aagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttg-aaaaatggtcgaaaactgcagaatttgcgcaag 140  Q
    |||||||||||||||||||||  |||||||||||||||||||||| ||||||  ||||||| |||| |||||||||| ||||||| |||||| | ||| |    
T  3487266 aagacaatacaaagtgaagaa--ttcatttgaagttccaagacattgcaagacggaagaactcttgaaaaaatggtcaaaaactgtagaattcgagcacg 3487169  T
Q  141 agggg 145  Q
    |||||    
T  3487168 agggg 3487164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 41 - 132
Target Start/End: Complemental strand, 24596905 - 24596815
Alignment:
Q  41 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaactgcagaatt 132  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||| ||||||   ||||| || || ||||||||||||||||||| ||||    
T  24596905 gaagacaatacaaagtgaagaaaattcatttgaagttccaaggcattgcaagacgaaagaatgcgtg-aaaatggtcgaaaactgcataatt 24596815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 246 - 399
Target Start/End: Complemental strand, 4092140 - 4091987
Alignment:
Q  246 cctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttc-a 343  Q
    |||||||||||||    ||||||||||||| ||| |||||  |  |||| ||||||||| |||| |||  |||||||||||||||||| | ||| ||| |    
T  4092140 cctaagtaatcatatgttataaatagagaccctttcacacattattattcattcagaaagctagcggttgaaggcaagggtcaagcatca-gaggttcca 4092042  T
Q  344 aggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgtt 399  Q
    |||  ||||||||||||| | ||||||||||||||| |||||||||||||||||||    
T  4092041 aggcagaggatctccatcttcctcttgttctctcta-ggtatgtttttctattgtt 4091987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 399
Target Start/End: Complemental strand, 7777631 - 7777592
Alignment:
Q  360 tcattctcttgttctctctagggtatgtttttctattgtt 399  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  7777631 tcattctcttgttctctctagggtatgtttttctattgtt 7777592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 23125064 - 23125108
Alignment:
Q  1 aaggatcgaggatatgaagattgaagttcaatagttcttagaaga 45  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||    
T  23125064 aaggatcgaggatatgaagattgaagttcaatggttcttataaga 23125108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 30405757 - 30405800
Alignment:
Q  1 aaggatcgaggatatgaagattgaagttcaatagttcttagaag 44  Q
    ||||||||||||||||||||||||||||||||  ||||||||||    
T  30405757 aaggatcgaggatatgaagattgaagttcaatgattcttagaag 30405800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 399
Target Start/End: Original strand, 20017506 - 20017596
Alignment:
Q  306 tagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgtt 399  Q
    ||||||| ||||||||||||||| |||||| || | |||||   ||||||| |||| | |||||||||||||| || |||||||||||||||||    
T  20017506 tagtggttcaaggcaagggtcaaacattaa-agttccaaggc--aggatcttcatcttcctcttgttctctcttggctatgtttttctattgtt 20017596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 358 - 399
Target Start/End: Complemental strand, 18468263 - 18468222
Alignment:
Q  358 catcattctcttgttctctctagggtatgtttttctattgtt 399  Q
    ||||||||| ||||||||| ||||||||||||||||||||||    
T  18468263 catcattcttttgttctctttagggtatgtttttctattgtt 18468222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 368 - 399
Target Start/End: Original strand, 7493862 - 7493893
Alignment:
Q  368 ttgttctctctagggtatgtttttctattgtt 399  Q
    ||||||||||||||||||||||||||||||||    
T  7493862 ttgttctctctagggtatgtttttctattgtt 7493893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 356 - 399
Target Start/End: Complemental strand, 21545398 - 21545355
Alignment:
Q  356 tccatcattctcttgttctctctagggtatgtttttctattgtt 399  Q
    ||||| || ||||||||||||||||||||||||||| |||||||    
T  21545398 tccattatcctcttgttctctctagggtatgtttttatattgtt 21545355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 294
Target Start/End: Complemental strand, 3268591 - 3268533
Alignment:
Q  236 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt 294  Q
    |||||||| ||||||||||| ||| |||||| ||| |||||||||||||| ||| ||||    
T  3268591 tctcttaaaccctaagtaatgatgtactatatatatagactcttgcacacacttttatt 3268533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 79
Target Start/End: Original strand, 20017166 - 20017204
Alignment:
Q  41 gaagacaatacaaagtgaagaaacttcatttgaagttcc 79  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  20017166 gaagacaatacaaagtgaagaaaattcatttcaagttcc 20017204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 361
Target Start/End: Complemental strand, 21537149 - 21537083
Alignment:
Q  295 attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatc 361  Q
    ||||| ||| |||| ||||||||| |||||| |||||| ||||||||||| |  |||||||||||||    
T  21537149 attcaaaaagctagcggtacaaggaaagggtaaagcatcaagagcttcaatggagaggatctccatc 21537083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 21545778 - 21545736
Alignment:
Q  1 aaggatcgaggatatgaagattgaagttcaatagttcttagaa 43  Q
    ||||||| |||||||||||||||||| ||||| ||||||||||    
T  21545778 aaggatcaaggatatgaagattgaagatcaatggttcttagaa 21545736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 79
Target Start/End: Original strand, 29544733 - 29544771
Alignment:
Q  41 gaagacaatacaaagtgaagaaacttcatttgaagttcc 79  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  29544733 gaagacaatacaaagtgaagaaaattcatttcaagttcc 29544771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 4829001 - 4829042
Alignment:
Q  41 gaagacaatacaaagtgaagaaacttcatttgaagttccaag 82  Q
    ||||||||||||||||||||| | ||||||| ||||||||||    
T  4829001 gaagacaatacaaagtgaagataattcatttcaagttccaag 4829042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 78
Target Start/End: Original strand, 7815536 - 7815573
Alignment:
Q  41 gaagacaatacaaagtgaagaaacttcatttgaagttc 78  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  7815536 gaagacaatacaaagtgaagaaaattcatttcaagttc 7815573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 390
Target Start/End: Complemental strand, 17880535 - 17880451
Alignment:
Q  305 ctagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttt 390  Q
    ||||||||| |||||||   |||||||||| |||||| || |  ||||||||||||| | || |||||||||||| ||||||||||    
T  17880535 ctagtggtataaggcaaatatcaagcatta-gagctttaatgtagaggatctccatcctcctattgttctctctatggtatgtttt 17880451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 7815886 - 7815922
Alignment:
Q  363 ttctcttgttctctctagggtatgtttttctattgtt 399  Q
    |||| |||||| |||||||||||||||||||||||||    
T  7815886 ttcttttgttcactctagggtatgtttttctattgtt 7815922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 9071002 - 9071038
Alignment:
Q  363 ttctcttgttctctctagggtatgtttttctattgtt 399  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  9071002 ttctcttcttctctctaaggtatgtttttctattgtt 9071038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 12358711 - 12358671
Alignment:
Q  4 gatcgaggatatgaagattgaagttcaatagttcttagaag 44  Q
    |||| |||||||||||||||||| ||||| |||||||||||    
T  12358711 gatcaaggatatgaagattgaagatcaatggttcttagaag 12358671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 21472359 - 21472395
Alignment:
Q  363 ttctcttgttctctctagggtatgtttttctattgtt 399  Q
    |||| |||||||||||||| |||||||||||||||||    
T  21472359 ttcttttgttctctctaggatatgtttttctattgtt 21472395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 184 - 399
Target Start/End: Original strand, 26298177 - 26298393
Alignment:
Q  184 tgatgtttgcttgttttccaagccgtttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcac 283  Q
    |||||||| |||||||||||||| |||||||||| ||||||| ||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  26298177 tgatgtttccttgttttccaagctgtttttggtgaaaaaaccttattttccctctcttaacccctaaggaatcatgcattataaatagagactcttgcac 26298276  T
Q  284 actcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctaggg 382  Q
    |||||| |||| ||| ||||| |||||| |||||| |||||||||||||| | |||||||||||| |||||||| |||| | |||||||| |||||   |    
T  26298277 actcttttattaattgagaaagctagtgctacaagtcaagggtcaagcatcatgagcttcaaggaagaggatcttcatcctcctcttgttgtctctcaag 26298376  T
Q  383 tatgtttttctattgtt 399  Q
    |||||| ||||||||||    
T  26298377 tatgttattctattgtt 26298393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 194 - 397
Target Start/End: Original strand, 18474610 - 18474816
Alignment:
Q  194 ttgttttccaagccgtttttggtggaaaaaccctattttcactctcttaa--cccctaagtaatcatgcactataaatagagactcttgcacactcttgt 291  Q
    |||||||||||| |||| ||||||||||| ||||||||||||||||||||  |||||| |||||||| || |||||||||||||   || ||||||||      
T  18474610 ttgttttccaaggcgttcttggtggaaaacccctattttcactctcttaatccccctacgtaatcatccattataaatagagacaaatgaacactctttc 18474709  T
Q  292 att-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttt 390  Q
    ||| |||| |||| |||| ||||||||||||||||||||||| | ||| |||||||  ||| ||||||||| | ||||| ||||||| ||||| | ||||    
T  18474710 attcattctgaaagctagaggtacaaggcaagggtcaagcatcaggagtttcaaggcagagtatctccatcctcctcttattctctccagggtttatttt 18474809  T
Q  391 tctattg 397  Q
    |||||||    
T  18474810 tctattg 18474816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 209 - 394
Target Start/End: Complemental strand, 19542783 - 19542596
Alignment:
Q  209 tttttggtggaaaaaccctattttcactctcttaacccc-taagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaact 306  Q
    ||||||||||||||||||||||||||||||||||||||| ||  | |||||||| ||||||||||||| | || ||||||||  ||| |||| |||| ||    
T  19542783 tttttggtggaaaaaccctattttcactctcttaaccccgtatatgatcatgcattataaatagagacacatgaacactctttcattcattctgaaagct 19542684  T
Q  307 agtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttcta 394  Q
     | |||||||||||||||||||||||||  || || ||||  ||| ||||||||| | ||||||||||||||||||||| ||||||||    
T  19542683 tgaggtacaaggcaagggtcaagcattataagttttaaggcagagtatctccatcctcctcttgttctctctagggtatatttttcta 19542596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 178 - 393
Target Start/End: Original strand, 20892054 - 20892272
Alignment:
Q  178 aggaagtgatgtttgcttgttttccaagccgtttttggtggaaaaaccctattttcactctcttaacc-cctaagtaatcatgcactataaatagagact 276  Q
    |||||||| ||||| |||| |||  ||||| ||||| ||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||| || |    
T  20892054 aggaagtgttgttttcttgctttataagccattttttgtggaaaaaccctattttcactcccttaaccacctaagcaatcatgcactataaatagtgaat 20892153  T
Q  277 cttgcacactcttgt-attattcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacga-ggatctccatcattctcttgttct 374  Q
    |||||||||| || | | |||||| ||| |||| ||||||||||||||||||||||| ||| | || || ||| | |||| |||||| | ||||||||||    
T  20892154 cttgcacactattttaactattcataaagctagcggtacaaggcaagggtcaagcatcaagcgttttaa-gacaagggatttccatcctcctcttgttct 20892252  T
Q  375 ctcta-gggtatgtttttct 393  Q
    || || ||||||||||||||    
T  20892253 ctttacgggtatgtttttct 20892272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 215 - 399
Target Start/End: Original strand, 11475287 - 11475471
Alignment:
Q  215 gtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggta 313  Q
    |||| ||||||||| |||   ||| |||||||||||||||| ||| | ||||||||||||||||||||||||||| |||| ||||||||| |||| |||     
T  11475287 gtgggaaaaccctagttttcttcttttaacccctaagtaatgatgtaatataaatagagactcttgcacactcttttattcattcagaaagctagcggtg 11475386  T
Q  314 caaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgtt 399  Q
    |||||||||| |||||||| || ||||||||||   |||||||  ||| ||  ||||||||||||| ||||||||||| |||||||    
T  11475387 caaggcaaggatcaagcatcaa-agcttcaaggtaaaggatctttatccttaccttgttctctctaaggtatgtttttatattgtt 11475471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 242 - 391
Target Start/End: Complemental strand, 21828858 - 21828709
Alignment:
Q  242 aacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagct 340  Q
    |||||||||||||| ||| ||||||||||||||| |||| ||| || | |||| ||||||||| |||| || |||| ||||||||||||||| |||||||    
T  21828858 aacccctaagtaatgatgaactataaatagagacccttgtacattcatttattcattcagaaagctagcggcacaatgcaagggtcaagcat-aagagct 21828760  T
Q  341 tcaaggacgaggatctccatcattctcttgttctctctagggtatgttttt 391  Q
    ||||||   |||||||||||| | |||||||||||||||||| || |||||    
T  21828759 tcaaggcaaaggatctccatcttcctcttgttctctctagggaattttttt 21828709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 248 - 362
Target Start/End: Complemental strand, 22489729 - 22489614
Alignment:
Q  248 taagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaagg 346  Q
    ||||||||||||||||||||||||||||  ||||||||| || |||| |||   ||| |||| |||||||| |||| ||||||||||| ||||||||| |    
T  22489729 taagtaatcatgcactataaatagagaccattgcacactattttattcattttaaaatctagcggtacaagacaagagtcaagcattacgagcttcaaag 22489630  T
Q  347 acgaggatctccatca 362  Q
      ||||||||||||||    
T  22489629 tagaggatctccatca 22489614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 236 - 376
Target Start/End: Complemental strand, 22992347 - 22992206
Alignment:
Q  236 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcatta 334  Q
    ||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||| | || ||| |||||  |||  |||||||||| ||||||| |  |     
T  22992347 tctctaaacccctacgtaatgatgcactataaatagagactcttccacactcttttgttgatttagaaacgtagcagtacaaggcaggggtcaaaccatc 22992248  T
Q  335 agagcttcaaggacgaggatctccatcattctcttgttctct 376  Q
    | ||||||||||  ||||||||| ||| | ||||||||||||    
T  22992247 atagcttcaaggtagaggatctctatcctcctcttgttctct 22992206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 236 - 396
Target Start/End: Original strand, 10342207 - 10342368
Alignment:
Q  236 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcatta 334  Q
    |||||||| ||||||||||||||  |||||||||| |||||||||||||   |  |||| |||||||||  ||||||| ||| || |||||||| || |     
T  10342207 tctcttaaaccctaagtaatcatttactataaatatagactcttgcacatattattattaattcagaaagttagtggttcaaagcgagggtcaaaca-tc 10342305  T
Q  335 agag-cttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctatt 396  Q
    ||||  |||||||  || ||| |||||| | ||||||||||||||||||||| ||||||||||    
T  10342306 agagttttcaaggcagatgatttccatcctcctcttgttctctctagggtatatttttctatt 10342368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 236 - 361
Target Start/End: Original strand, 19285549 - 19285673
Alignment:
Q  236 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcatta 334  Q
    |||| ||||||| ||||||| |||||||||||||| ||||  ||| |||||||| |||| ||||||||| ||| |||||||||||||||||||| || |     
T  19285549 tctcctaaccccgaagtaatgatgcactataaataaagacctttg-acactcttttattcattcagaaagctaatggtacaaggcaagggtcaaaca-tc 19285646  T
Q  335 agagcttcaaggacgaggatctccatc 361  Q
     |||||||||||  |||||||| ||||    
T  19285647 ggagcttcaaggcagaggatcttcatc 19285673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 346
Target Start/End: Original strand, 33578208 - 33578318
Alignment:
Q  236 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcatta 334  Q
    ||||||||||  || ||||| || |||||||||||||||| ||||||||| ||| |||| ||| ||||| |||| ||| |||||||| |||||| ||||     
T  33578208 tctcttaacctatacgtaatgatacactataaatagagacacttgcacacacttttattcatttagaaagctagcggttcaaggcaatggtcaaacatt- 33578306  T
Q  335 agagcttcaagg 346  Q
    ||||||||||||    
T  33578307 agagcttcaagg 33578318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 187 - 346
Target Start/End: Complemental strand, 26387517 - 26387355
Alignment:
Q  187 tgtttgcttgttttccaagccgtttttggtggaaaaaccctattt-tcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacac 285  Q
    |||||||| ||||||||| | |||||||||||||||| ||||||| |  | | ||||||||| ||||||| ||||| |||||||| | |  ||| | |||    
T  26387517 tgtttgctagttttccaaactgtttttggtggaaaaaacctatttctaccccccttaacccccaagtaatgatgcattataaatatatatccttactcac 26387418  T
Q  286 tcttgtatt-attcagaaaa-ctagtggtacaaggcaagggtcaagcattaagagcttcaagg 346  Q
    ||||  ||| |||||||||| ||| || |||| |||||||||| || || |||||||||||||    
T  26387417 tctttcattcattcagaaaagctactgatacatggcaagggtcgagaatcaagagcttcaagg 26387355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 349 - 397
Target Start/End: Complemental strand, 14280839 - 14280791
Alignment:
Q  349 gaggatctccatcattctcttgttctctctagggtatgtttttctattg 397  Q
    |||||||| |||| | |||||||||||||||||||||||||||||||||    
T  14280839 gaggatctacatcctcctcttgttctctctagggtatgtttttctattg 14280791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 19543025 - 19542973
Alignment:
Q  41 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaaga 93  Q
    ||||||||||||||||||||||| ||||||| |||||||||| ||| ||||||    
T  19543025 gaagacaatacaaagtgaagaaaattcatttcaagttccaaggcattgcaaga 19542973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 156
Target Start/End: Original strand, 26297978 - 26298069
Alignment:
Q  65 ttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaactgcagaatttgcgcaagaggggatgcctcatgc 156  Q
    |||||||||||||||||| ||| ||||||||| ||||||| |||||||  ||  |||| || ||||||||| || |||||| || |||||||    
T  26297978 ttcatttgaagttccaaggcattgcaagataggagaacgcatgaaaaagagtaaaaaattgaagaatttgcacatgaggggttgtctcatgc 26298069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 27374347 - 27374274
Alignment:
Q  44 gacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtc 117  Q
    ||||||||| |||||||||| ||||||| ||| ||||||   || ||||| |||||||||||||||||| ||||    
T  27374347 gacaatacagagtgaagaaaattcatttaaagatccaaggtgtcacaagacagaagaacgcttgaaaaagggtc 27374274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 18474383 - 18474423
Alignment:
Q  41 gaagacaatacaaagtgaagaaacttcatttgaagttccaa 81  Q
    ||||||||||||||||||||||| ||||||| |||||||||    
T  18474383 gaagacaatacaaagtgaagaaaattcatttcaagttccaa 18474423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 336 - 399
Target Start/End: Complemental strand, 8401967 - 8401904
Alignment:
Q  336 gagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgtt 399  Q
    |||||||| ||  |||||||| |||| | |||||||| |||||||||||||||||| |||||||    
T  8401967 gagcttcatggcagaggatcttcatcctcctcttgttatctctagggtatgtttttatattgtt 8401904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 19219162 - 19219119
Alignment:
Q  1 aaggatcgaggatatgaagattgaagttcaatagttcttagaag 44  Q
    ||||||| |||||||||||||||||| ||||| |||||||||||    
T  19219162 aaggatcaaggatatgaagattgaagatcaatggttcttagaag 19219119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 399
Target Start/End: Complemental strand, 22488414 - 22488368
Alignment:
Q  353 atctccatcattctcttgttctctctagggtatgtttttctattgtt 399  Q
    ||||||||| | ||||||||||||||||| |||||||||| ||||||    
T  22488414 atctccatcctcctcttgttctctctaggatatgtttttcaattgtt 22488368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 22493491 - 22493445
Alignment:
Q  180 gaagtgatgtttgcttgttttccaagccgtttttggtggaaaaaccc 226  Q
    |||||||||||| ||||||||| || | |||||||||||||||||||    
T  22493491 gaagtgatgttttcttgttttcgaaactgtttttggtggaaaaaccc 22493445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 294
Target Start/End: Complemental strand, 22991132 - 22991074
Alignment:
Q  236 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt 294  Q
    |||| |||||| |||||||| ||||||||||||| |||||  |||||||||||| ||||    
T  22991132 tctcgtaacccataagtaatgatgcactataaatcgagaccattgcacactcttttatt 22991074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 79
Target Start/End: Original strand, 25883316 - 25883354
Alignment:
Q  41 gaagacaatacaaagtgaagaaacttcatttgaagttcc 79  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  25883316 gaagacaatacaaagtgaagaaaattcatttcaagttcc 25883354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 8402452 - 8402392
Alignment:
Q  41 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaa 101  Q
    ||||| |||| |||||||||||  ||||||| |||||||| ||||| ||||||| ||||||    
T  8402452 gaagaaaatataaagtgaagaacattcatttcaagttccatgacattgcaagatggaagaa 8402392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 13911871 - 13911907
Alignment:
Q  363 ttctcttgttctctctagggtatgtttttctattgtt 399  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  13911871 ttctcttgttctctatagggtatggttttctattgtt 13911907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 19219112 - 19219068
Alignment:
Q  41 gaagacaatacaaagtgaagaaacttcatttgaagttccaagaca 85  Q
    ||||||||||||||||||| ||| ||||||| || ||||||||||    
T  19219112 gaagacaatacaaagtgaataaaattcatttcaaattccaagaca 19219068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 6e-47; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 193 - 399
Target Start/End: Original strand, 21549058 - 21549264
Alignment:
Q  193 cttgttttccaagccgtttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgta 292  Q
    |||||||| ||||| ||| |||||||||||||| |||||| ||| |||||||||  ||||||||||||| |||||||| |||| ||||||||||||| ||    
T  21549058 cttgtttttcaagctgttattggtggaaaaacc-tatttttactttcttaacccaaaagtaatcatgcaatataaataaagacccttgcacactctttta 21549156  T
Q  293 tt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgttttt 391  Q
    || ||||| ||| ||||  ||||||| ||| |||||||||| | || ||||||||  ||||||||||||| | |||||||||||||||||||||||||||    
T  21549157 ttcattcaaaaatctagcagtacaagtcaatggtcaagcatcaggatcttcaaggcagaggatctccatcctcctcttgttctctctagggtatgttttt 21549256  T
Q  392 ctattgtt 399  Q
    ||||||||    
T  21549257 ctattgtt 21549264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 193 - 399
Target Start/End: Complemental strand, 52270935 - 52270721
Alignment:
Q  193 cttgttttccaagccgtttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactc-------ttgcacac 285  Q
    |||||||| ||||  ||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||       || ||||     
T  52270935 cttgtttttcaagttgtttttggtggaaaagctctattttcactctcttaacccctaagtaatcatgcaatataaatagagactcttcactgttacacaa 52270836  T
Q  286 tcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggta 384  Q
    |||| |||| ||||||||| |||| ||||||||||||||| ||||||| | |||||||| ||   ||||||| |||| | ||||||||||||||||   |    
T  52270835 tcttttattcattcagaaagctagcggtacaaggcaagggccaagcatcaggagcttcacggcaaaggatcttcatcctcctcttgttctctctagatga 52270736  T
Q  385 tgtttttctattgtt 399  Q
    |||||||||||||||    
T  52270735 tgtttttctattgtt 52270721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 197 - 399
Target Start/End: Original strand, 25778148 - 25778351
Alignment:
Q  197 ttttccaagccgtttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-a 295  Q
    |||| |||| ||||||| ||| |||| || ||||||  |||| ||||| | |||||||| |||||||||||||||||||  |||||||||||| |||| |    
T  25778148 tttttcaagtcgttttttgtgcaaaacccttatttttcctctattaactcttaagtaataatgcactataaatagagacctttgcacactcttttattca 25778247  T
Q  296 ttcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctat 395  Q
    || | |||  ||   |||||||||||||||||| |||   |||||||||||| ||| ||||||||| | |||| ||||||||||||||||||||||||||    
T  25778248 tttataaagataacagtacaaggcaagggtcaaacatctggagcttcaaggaagagcatctccatcctcctctcgttctctctagggtatgtttttctat 25778347  T
Q  396 tgtt 399  Q
    ||||    
T  25778348 tgtt 25778351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 26854271 - 26854102
Alignment:
Q  1 aaggatcgaggatatgaagattgaagttcaatagttcttagaaga----------caatacaaagtgaagaaacttcatttgaagttccaagacatcgca 90  Q
    ||||||| | |||||||||||||||||||||| ||||||||||||          |||||||||||||||||| |||||||||||||||||| ||| |||    
T  26854271 aaggatcaatgatatgaagattgaagttcaatggttcttagaagatatttgaagacaatacaaagtgaagaaaattcatttgaagttccaaggcattgca 26854172  T
Q  91 agatagaagaacgcttgaaaaatggtcgaaaactgcagaatttgcgcaagaggggatgcctcatgcgcccc 161  Q
    |||| ||||||| | ||||||||||||||||| |||||| || || || ||||||||||||||||| ||||    
T  26854171 agatggaagaacac-tgaaaaatggtcgaaaattgcagagttcgcacatgaggggatgcctcatgcacccc 26854102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 209 - 390
Target Start/End: Complemental strand, 25665480 - 25665296
Alignment:
Q  209 tttttggtggaaaaa--ccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaac 305  Q
    |||||||||||||||  |||||||||||| || | ||||| ||||||| |||||||| ||||||||||| |||||||| | ||  ||| ||||| ||| |    
T  25665480 tttttggtggaaaaaaaccctattttcacactttgaacccataagtaagcatgcactgtaaatagagacccttgcacaatttttaattcattcataaagc 25665381  T
Q  306 tagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttt 390  Q
    |||  ||||||| |||||||||||||| | |||||||||||  || |||||||||| | ||||||||||||||||| ||||||||    
T  25665380 tagcagtacaagacaagggtcaagcatcatgagcttcaaggcagatgatctccatcctcctcttgttctctctaggatatgtttt 25665296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 192 - 399
Target Start/End: Original strand, 23506183 - 23506391
Alignment:
Q  192 gcttgttttccaagccgtttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgt 291  Q
    ||||||||||||||  ||| |||||||| |||  |||||||||||||||| | ||||||||||| ||||||||||||||||||| |||| |||   || |    
T  23506183 gcttgttttccaagaagttcttggtggataaaatctattttcactctcttgagccctaagtaataatgcactataaatagagacccttggacagaattct 23506282  T
Q  292 att-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttt 390  Q
    |||  ||||||||  |||  |||||||||||| ||  ||||||||||||||| |||    ||||||||||| | ||||| |||||||||| | |||||||    
T  23506283 attctttcagaaagttagcagtacaaggcaagtgtttagcattaagagcttcgaggcatcggatctccatcctcctcttattctctctagagaatgtttt 23506382  T
Q  391 tctattgtt 399  Q
    |||||||||    
T  23506383 tctattgtt 23506391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 184 - 346
Target Start/End: Complemental strand, 26854036 - 26853873
Alignment:
Q  184 tgatgtttgcttgttttccaagccgtttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcac 283  Q
    |||||||||  |||| ||| ||||||||||||||||||||| ||||||||||| ||| |||||||||||||| || |||||||||||||||| |||| ||    
T  26854036 tgatgtttgtctgttctcccagccgtttttggtggaaaaacactattttcactatctcaacccctaagtaatgatacactataaatagagacccttgaac 26853937  T
Q  284 actcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaagg 346  Q
    ||| || |||| ||||||||| |||    ||  ||||||| ||||||||| |||||||||||||    
T  26853936 actattttattcattcagaaagctaacaatatgaggcaagagtcaagcatcaagagcttcaagg 26853873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 245 - 399
Target Start/End: Original strand, 25730937 - 25731092
Alignment:
Q  245 ccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttca 343  Q
    ||||||||||| |||||||||||||||||||  ||||| |||||| |||| ||| | |||  ||   ||||||||||||||| || ||| | |||||| |    
T  25730937 ccctaagtaataatgcactataaatagagacctttgcatactcttttattcatttataaagataacagtacaaggcaagggtaaaacatcaggagcttaa 25731036  T
Q  344 aggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgtt 399  Q
    |||| |||||||| |||| | |||  |||||||||||||||||||||| |||||||    
T  25731037 aggaagaggatcttcatcctcctcccgttctctctagggtatgtttttatattgtt 25731092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 236 - 399
Target Start/End: Original strand, 34533082 - 34533245
Alignment:
Q  236 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcatta 334  Q
    |||||||| | ||||||||||||    |||||||||||||||||||||||  |  |||| ||| |||||||||   || ||| ||| ||||||||||| |    
T  34533082 tctcttaaactctaagtaatcatatgatataaatagagactcttgcacacattcttattcatttagaaaactaacagttcaatgcacgggtcaagcatca 34533181  T
Q  335 agagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgtt 399  Q
      || |||||||| |||||||| |||| | |||||||||||||||||||||||||||| ||||||    
T  34533182 t-agtttcaaggaagaggatcttcatcctcctcttgttctctctagggtatgtttttcgattgtt 34533245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 236 - 332
Target Start/End: Complemental strand, 27460540 - 27460443
Alignment:
Q  236 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcat 332  Q
    |||||||||||||||||||| || |||||||||||||||| ||| ||||||||| ||||  ||||||||||||| ||||||   ||||| ||||||||    
T  27460540 tctcttaacccctaagtaatgatccactataaatagagacccttacacactcttttattctttcagaaaactagcggtacattacaaggatcaagcat 27460443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 243 - 399
Target Start/End: Original strand, 31314004 - 31314160
Alignment:
Q  243 acccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagctt 341  Q
    |||| |||| ||| ||||||||||||||||||   |||  ||||||| |||| ||||||||| |||| |||||||||  |||||||| ||| | |||||     
T  31314004 acccttaagcaatgatgcactataaatagagatcattgttcactcttttatttattcagaaagctagcggtacaaggttagggtcaaccatca-gagctg 31314102  T
Q  342 caaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgtt 399  Q
    |||||  |||||||||||||    |||||||||||||| ||| |||||||||||||||    
T  31314103 caaggcagaggatctccatccccatcttgttctctctatggtttgtttttctattgtt 31314160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 25665670 - 25665590
Alignment:
Q  42 aagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaa 122  Q
    ||||||||||||||||||||||  ||||||||||||||||| ||| ||||||  |||||||| |||||||| | |||||||    
T  25665670 aagacaatacaaagtgaagaaaaatcatttgaagttccaaggcattgcaagacggaagaacgattgaaaaaggttcgaaaa 25665590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 399
Target Start/End: Original strand, 50047619 - 50047702
Alignment:
Q  315 aaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgtt 399  Q
    |||||||||||||| ||||| ||| | |||||| | ||||||||||| | ||||||||||||||||||||||||||| |||||||    
T  50047619 aaggcaagggtcaaacatta-gagttccaaggaaggggatctccatcctcctcttgttctctctagggtatgtttttatattgtt 50047702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 41 - 112
Target Start/End: Original strand, 23505969 - 23506040
Alignment:
Q  41 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaa 112  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||  |||||| |||| |||||| ||||||    
T  23505969 gaagacaatacaaagtgaagaaaattcatttcaagttccaagacaatgcaagacagaataacgctggaaaaa 23506040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 52271196 - 52271027
Alignment:
Q  1 aaggatcgaggatatgaagattgaagttcaatagttcttagaag----------acaatacaaagtgaagaaacttcatttgaagttccaagacatcgca 90  Q
    |||||||||||||||||||||||||||||||| || ||||||||          ||||||||||||||||||| ||||||| || |||||||  || |||    
T  52271196 aaggatcgaggatatgaagattgaagttcaatggtacttagaaggtatttgaagacaatacaaagtgaagaaaattcatttcaaattccaaggaattgca 52271097  T
Q  91 agatagaagaacgcttgaaaaatggtcgaaaactgcagaatttgcgcaagaggggatgcctcatgcgcccc 161  Q
    |||  ||||||||   | |||| |||| |||||||  ||||| | |||||||||| ||||| |||||||||    
T  52271096 agacggaagaacgggcg-aaaagggtcaaaaactgttgaattcgtgcaagaggggttgccttatgcgcccc 52271027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 391
Target Start/End: Original strand, 26658002 - 26658096
Alignment:
Q  293 ttattcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgttttt 391  Q
    |||||||||| ||| |  || ||||||||||||||||||| | ||||||||||||  | ||| ||  ||||||||||||||||||||||||||||||||    
T  26658002 ttattcagaacactggcagttcaaggcaagggtcaagcatca-gagcttcaagga--atgatttct-tcattctcttgttctctctagggtatgttttt 26658096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 41 - 153
Target Start/End: Original strand, 21548861 - 21548974
Alignment:
Q  41 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaa-ctgcagaatttgcgcaa 139  Q
    ||||| |||||||  |||| ||| |||||||||||||||||| |||  |||||   ||||| ||| |||||| ||| ||||| ||||| |||||||||||    
T  21548861 gaagataatacaagttgaaaaaaattcatttgaagttccaaggcattacaagacgaaagaatgctagaaaaagggttgaaaaactgcataatttgcgcaa 21548960  T
Q  140 gaggggatgcctca 153  Q
    |||||  |||||||    
T  21548961 gagggactgcctca 21548974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 332
Target Start/End: Original strand, 25126900 - 25126997
Alignment:
Q  236 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcat 332  Q
    |||||||||||| ||||| | ||| | ||||||||||||  |||| ||||| || |||| ||||| ||| ||||  ||||||||||||||||||||||    
T  25126900 tctcttaaccccaaagtagtgatgtattataaatagagatccttgaacacttttttattcattcaaaaagctagcagtacaaggcaagggtcaagcat 25126997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 350 - 399
Target Start/End: Original strand, 30675992 - 30676041
Alignment:
Q  350 aggatctccatcattctcttgttctctctagggtatgtttttctattgtt 399  Q
    |||||||||||| | |||||  ||||||||||||||||||||||||||||    
T  30675992 aggatctccatcctcctcttagtctctctagggtatgtttttctattgtt 30676041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 399
Target Start/End: Complemental strand, 14745102 - 14744945
Alignment:
Q  235 ctctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtattattcagaaaactagtggtacaaggcaagggtcaagcatta 334  Q
    ||||||||||||||||||||| ||| || |||| || ||| | ||||||||||||  |||| | ||    ||||  ||| ||||||||||||||||||      
T  14745102 ctctcttaacccctaagtaatgatgtaccataagtaaagatttttgcacactctt--attaattag----ctagcagtataaggcaagggtcaagcatct 14745009  T
Q  335 agagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgtt 399  Q
     ||||||||||   || ||||| |||| |  |||||||||||||| | |||||||||||||||||    
T  14745008 -gagcttcaagacagatgatctgcatcctcttcttgttctctctatgatatgtttttctattgtt 14744945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 79
Target Start/End: Complemental strand, 11769895 - 11769857
Alignment:
Q  41 gaagacaatacaaagtgaagaaacttcatttgaagttcc 79  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  11769895 gaagacaatacaaagtgaagaaaattcatttcaagttcc 11769857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 399
Target Start/End: Complemental strand, 11769558 - 11769501
Alignment:
Q  342 caaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgtt 399  Q
    |||||| ||||||||||||| | ||||| ||||||||| ||| ||||||| |||||||    
T  11769558 caaggaagaggatctccatcctcctctttttctctctatggtgtgtttttatattgtt 11769501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 19257712 - 19257655
Alignment:
Q  36 tcttagaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaaga 93  Q
    |||| ||||||||||||||||||||||| || |||| || ||||||| ||| ||||||    
T  19257712 tctttgaagacaatacaaagtgaagaaaatttatttcaatttccaaggcattgcaaga 19257655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 399
Target Start/End: Original strand, 23223890 - 23223991
Alignment:
Q  295 attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttcta 394  Q
    ||||||||| |||||| | || || ||||||||||||| | ||| | |||||  |||||||| |||| | |||| ||||||  |||||||||||||||||    
T  23223890 attcagaaagctagtgattcacggaaagggtcaagcatca-gagttccaaggcagaggatcttcatcctcctctagttctc--tagggtatgtttttcta 23223986  T
Q  395 ttgtt 399  Q
    |||||    
T  23223987 ttgtt 23223991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 396
Target Start/End: Original strand, 12810735 - 12810771
Alignment:
Q  360 tcattctcttgttctctctagggtatgtttttctatt 396  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  12810735 tcattctcttgttctctttagggtatgcttttctatt 12810771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 4e-45; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 187 - 398
Target Start/End: Original strand, 11437801 - 11438013
Alignment:
Q  187 tgtttgcttgttttccaagccgtttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacact 286  Q
    |||||| ||||||||||||    |||||||||||||| | |||||||||||| |||||||||||||||| |||||  ||||||| ||||  || ||||||    
T  11437801 tgtttgtttgttttccaaggtaattttggtggaaaaatcatattttcactctgttaacccctaagtaatgatgcatcataaatatagaccattacacact 11437900  T
Q  287 cttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtat 385  Q
     || |||| ||| ||||| ||||| |||||||||||||||||||||| | ||||||||| |  ||||||||||||| |||||||||||||| ||||||||    
T  11437901 attttattcatttagaaagctagtagtacaaggcaagggtcaagcatcatgagcttcaaagcagaggatctccatccttctcttgttctctgtagggtat 11438000  T
Q  386 gtttttctattgt 398  Q
    |||||| ||||||    
T  11438001 gtttttttattgt 11438013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 193 - 399
Target Start/End: Original strand, 18771340 - 18771547
Alignment:
Q  193 cttgttttccaagccgtttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgta 292  Q
    ||||||||||||   ||||||||||||||| |||||||||||||||||||| |||| ||||||||| |||| | ||||||||| ||||||||||||| ||    
T  18771340 cttgttttccaatatgtttttggtggaaaacccctattttcactctcttaatccctcagtaatcatacactcttaatagagacccttgcacactctttta 18771439  T
Q  293 tt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgttttt 391  Q
    || ||| ||||| | |  | |||||||||| |||||||||| | |||||||||||  || |||||||||| |  | ||||||||||||| |||| |||||    
T  18771440 ttcatttagaaatccatcgatacaaggcaatggtcaagcatcaggagcttcaaggtagatgatctccatcctcattttgttctctctagagtatcttttt 18771539  T
Q  392 ctattgtt 399  Q
    ||||||||    
T  18771540 ctattgtt 18771547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 219 - 399
Target Start/End: Complemental strand, 30850731 - 30850553
Alignment:
Q  219 aaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaag 317  Q
    ||||| |||| ||||| |||||||||||||||||||| ||  | | ||||||||||| | |||| | |||| |||| ||||||||| |||| ||||||||    
T  30850731 aaaaagcctaatttca-tctcttaacccctaagtaatgatt-attgtaaatagagacccatgcaaattcttttattcattcagaaagctagcggtacaag 30850634  T
Q  318 gcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgtt 399  Q
    ||||||||||| ||| ||||| || ||||  ||||||||||||| | || ||||||||||||||||||||||||||||||||    
T  30850633 gcaagggtcaaacat-aagagatttaaggcagaggatctccatcctcctattgttctctctagggtatgtttttctattgtt 30850553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 11437583 - 11437753
Alignment:
Q  1 aaggatcgaggatatgaagattgaagttcaatagttcttagaag----------acaatacaaagtgaagaaacttcatttgaagttccaagacatcgca 90  Q
    ||||||| |||||||||| ||||||||||||| |||||||||||          |||||||| |||||||| | |||||||||||||||||  ||| |||    
T  11437583 aaggatcaaggatatgaaaattgaagttcaatggttcttagaagacatttgaagacaatacagagtgaagataattcatttgaagttccaaagcattgca 11437682  T
Q  91 agatagaagaacgcttgaaaaatggtcgaaaactgcagaatttgcgcaagaggggatgcctcatgcgcccc 161  Q
    |||  ||||||| ||||||||| | ||||||||| |||||||||| ||||||||| | ||||||| |||||    
T  11437683 agacggaagaacacttgaaaaaggatcgaaaactacagaatttgcacaagaggggttacctcatgtgcccc 11437753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 227 - 372
Target Start/End: Original strand, 30544171 - 30544319
Alignment:
Q  227 tattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaa--ctagtggtacaaggcaagg 323  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||   |||||||||||| |||| ||| ||||||  |||||||| |||||||||     
T  30544171 tattttcactctcttaacccctaagtaatcatacactataaatagagatcattgcacactcttttattcatttagaaaaggctagtggttcaaggcaaga 30544270  T
Q  324 gtcaagcattaagagcttcaaggacgaggatctccatcattctcttgtt 372  Q
    ||||| || || | |||||||||   ||||||| |||| | ||||||||    
T  30544271 gtcaaacaataggcgcttcaaggcataggatcttcatcctcctcttgtt 30544319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 189 - 399
Target Start/End: Complemental strand, 24927565 - 24927355
Alignment:
Q  189 tttgcttgttttccaagccgtttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactct 288  Q
    ||||| |||||||  |||||||||||   | |||||| | |||||  |||||||||||||||||||||||  | ||||||||||||| ||||||||   |    
T  24927565 tttgcatgttttcttagccgtttttgaatggaaaaccatgttttctttctcttaacccctaagtaatcatctaatataaatagagacccttgcacaaatt 24927466  T
Q  289 tgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgt 387  Q
    | |||| ||||| | |  ||||||| ||||||||  ||||| ||  | |||||||||||  |||||||| |||| | | |||||||||| ||||||||||    
T  24927465 t-tattcattcatatagttagtggtccaaggcaaatgtcaaacaccaggagcttcaaggtggaggatcttcatcctccccttgttctctttagggtatgt 24927367  T
Q  388 ttttctattgtt 399  Q
    ||||||||||||    
T  24927366 ttttctattgtt 24927355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 295 - 399
Target Start/End: Complemental strand, 13583216 - 13583112
Alignment:
Q  295 attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttcta 394  Q
    ||||| ||| |||| ||||||||||||||||||| ||| |||||||||||||  ||||||||||| ||  ||||| |||| | ||||||||||||||| |    
T  13583216 attcataaagctagaggtacaaggcaagggtcaaccatcaagagcttcaaggcggaggatctccaccaccctcttattctttgtagggtatgtttttcca 13583117  T
Q  395 ttgtt 399  Q
    |||||    
T  13583116 ttgtt 13583112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 227 - 346
Target Start/End: Original strand, 18786125 - 18786245
Alignment:
Q  227 tattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggt 325  Q
    ||||||||||||||||| |||||||||||||| |||||| ||| |||||  ||||||||| || |||| ||| ||||| | |  ||||||||| || |||    
T  18786125 tattttcactctcttaatccctaagtaatcatacactattaattgagacctttgcacacttttttattcatttagaaagccatcggtacaaggaaatggt 18786224  T
Q  326 caagcattaagagcttcaagg 346  Q
    ||||||| | |||||||||||    
T  18786225 caagcatcaggagcttcaagg 18786245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 30543924 - 30544095
Alignment:
Q  1 aaggatcgaggatatgaagattgaagttcaatagttctt----aga-------agacaatacaaagtgaagaaacttcatttgaagttccaagacatcgc 89  Q
    |||||| ||||||||||||||||||||||||| ||||||    |||       |||||||| |||||||||||| ||||||| |||||||||| ||| ||    
T  30543924 aaggattgaggatatgaagattgaagttcaatggttctttaaaagatatttaaagacaatataaagtgaagaaaattcatttcaagttccaaggcattgc 30544023  T
Q  90 aagatagaagaacgcttgaaaaatggtcgaaaactgcagaatttgcgcaagaggggatgcctcatgcgcccc 161  Q
    |||   |||||| |  ||||||| ||||||||||||| ||| | | ||| |||||| ||||||||| |||||    
T  30544024 aaggcggaagaatgagtgaaaaagggtcgaaaactgctgaaatcgtgcatgaggggttgcctcatgtgcccc 30544095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 13583471 - 13583304
Alignment:
Q  1 aaggatcgaggatatgaagattgaagttcaatagttcttagaaga----------caatacaaagtgaagaaac----ttcatttgaagttccaagacat 86  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||          |||||||||||||| |||     ||||||||||||||||||  ||    
T  13583471 aaggatcgaggatatgatgattgaagttcaatggttcttagaagatatttgaagacaatacaaagtgaaaaaaaaaaattcatttgaagttccaaggtat 13583372  T
Q  87 cgcaagatagaagaacgcttgaaaaatggtcgaaaactgcagaatttgcgcaagaggggatgcctcat 154  Q
     ||||||  |||||||||| |||||| | ||||||||| || |||| || || |||||| ||||||||    
T  13583371 tgcaagacggaagaacgctggaaaaaagatcgaaaactacataattcgcacatgaggggctgcctcat 13583304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 312 - 399
Target Start/End: Original strand, 14184463 - 14184552
Alignment:
Q  312 tacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgt--tctctctagggtatgtttttctattgtt 399  Q
    |||||||||| |||||||||| |||||||||||||  || |||||||||| | ||||| |  ||||||||||||||| ||||||||||||    
T  14184463 tacaaggcaatggtcaagcatcaagagcttcaaggtagaagatctccatcctcctcttattctctctctagggtatgattttctattgtt 14184552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 383
Target Start/End: Original strand, 29292366 - 29292453
Alignment:
Q  296 ttcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggt 383  Q
    ||||||||  ||| |||||||||||| | |||| ||| | |||||||||||| || ||||  ||||||||||||||||||||||||||    
T  29292366 ttcagaaagttagaggtacaaggcaatgatcaaacatcaggagcttcaaggaagaagatcagcatcattctcttgttctctctagggt 29292453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 41 - 133
Target Start/End: Original strand, 5153971 - 5154063
Alignment:
Q  41 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaactgcagaattt 133  Q
    |||||||||| ||  |||| ||| ||||||| |||||||||||||| ||||||  |||||| ||| |||||| || ||||||||||| |||||    
T  5153971 gaagacaatataacatgaataaaattcatttcaagttccaagacattgcaagacggaagaatgctcgaaaaagggacgaaaactgcaaaattt 5154063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 240 - 391
Target Start/End: Original strand, 28074945 - 28075096
Alignment:
Q  240 ttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagag 338  Q
    |||||||||||||||| |||||||||||||||||||  ||| ||||| || |||| ||||||||  ||||  ||| ||| |||||||||| || | | |     
T  28074945 ttaacccctaagtaattatgcactataaatagagacctttgtacactattttattcattcagaaggctagcagtataagacaagggtcaaaca-tcataa 28075043  T
Q  339 cttcaaggacgaggatctccatcattctcttgttctctctagggtatgttttt 391  Q
    ||| | ||  ||||||||| ||| | ||||||||||  |||||||||||||||    
T  28075044 ctttatggcagaggatctctatcctcctcttgttcttactagggtatgttttt 28075096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 396
Target Start/End: Complemental strand, 22892821 - 22892743
Alignment:
Q  314 caaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctatt 396  Q
    ||||||||||||||||||| | ||| ||||||||  ||||| ||  || ||||||||||||||||||||||||||||||||||    
T  22892821 caaggcaagggtcaagcatca-gagtttcaagga--aggatttct-tccttctcttgttctctctagggtatgtttttctatt 22892743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 332
Target Start/End: Complemental strand, 5569833 - 5569737
Alignment:
Q  236 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcat 332  Q
    |||||||| ||||||||||||||    ||||||||||||| ||| ||||| ||| |||| |||||||||||||  ||| |||||||||| ||||||||    
T  5569833 tctcttaaaccctaagtaatcatttgttataaatagagaccctt-cacacacttttattcattcagaaaactaacggttcaaggcaaggatcaagcat 5569737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 22894433 - 22894392
Alignment:
Q  41 gaagacaatacaaagtgaagaaacttcatttgaagttccaag 82  Q
    ||||||||||||||||||||||| ||| ||||||||||||||    
T  22894433 gaagacaatacaaagtgaagaaaattcttttgaagttccaag 22894392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 238 - 322
Target Start/End: Original strand, 23876395 - 23876480
Alignment:
Q  238 tcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgta-ttattcagaaaactagtggtacaaggcaag 322  Q
    ||||||||| |||||||| ||||||||||||||||||| ||| |||| |||| || ||||| || || |||| |||| ||||||||    
T  23876395 tcttaacccttaagtaatgatgcactataaatagagacacttacacattcttttatttatttagcaagctagcggtataaggcaag 23876480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 391
Target Start/End: Original strand, 24120711 - 24120866
Alignment:
Q  236 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcatta 334  Q
    |||||||| | ||||||||||||   ||||||||||||||  |||||||| ||| || | ||||||||| |||  |||  ||| |||||| ||||||| |    
T  24120711 tctcttaaacactaagtaatcatatgctataaatagagaccattgcacacacttttaatgattcagaaagctaccggtttaagccaagggccaagcatca 24120810  T
Q  335 agagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgttttt 391  Q
     ||| | |||||  ||||||||| ||| | ||||||||||||||| ||||| |||||    
T  24120811 -gagttccaaggcagaggatctctatcctcctcttgttctctctacggtattttttt 24120866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 236 - 275
Target Start/End: Complemental strand, 6887867 - 6887828
Alignment:
Q  236 tctcttaacccctaagtaatcatgcactataaatagagac 275  Q
    |||||||||| ||||||||| |||||||||||||||||||    
T  6887867 tctcttaacctctaagtaatgatgcactataaatagagac 6887828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 30850995 - 30850944
Alignment:
Q  47 aatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaa 98  Q
    ||||||||||||||||| || |||| |||||||||| ||| |||||||||||    
T  30850995 aatacaaagtgaagaaaattaatttcaagttccaagtcattgcaagatagaa 30850944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 125
Target Start/End: Original strand, 32239502 - 32239585
Alignment:
Q  42 aagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaactg 125  Q
    ||||||||| |||||||||||| ||||||| ||||| |||| ||| |||||| |||| ||||   |||||| |||| |||||||    
T  32239502 aagacaataaaaagtgaagaaaattcatttcaagtttcaaggcattgcaagacagaaaaacgggcgaaaaagggtcaaaaactg 32239585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 31436643 - 31436742
Alignment:
Q  8 gaggatatgaagattgaagttcaatagttcttag-------aagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaaga 100  Q
    ||||||||||||||||| | ||||| ||||||||       |||||||||||||||||| ||| || |||| |||||||||| ||| |||||| ||||||    
T  31436643 gaggatatgaagattgacgatcaatggttcttaggtatttgaagacaatacaaagtgaaaaaaatt-atttcaagttccaaggcattgcaagacagaaga 31436741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 304
Target Start/End: Original strand, 14184326 - 14184443
Alignment:
Q  189 tttgcttgttttccaagccgtttttggtggaaaaaccctattttcactctcttaacccc-taagtaatcatgcactataaatagagactcttgcacactc 287  Q
    |||||||||||||||||| | ||||    | |||| ||| |||||  |||||||||||| |||||||||||   |||||||||||||  ||||||||| |    
T  14184326 tttgcttgttttccaagctgcttttcaatggaaaatcctgttttctttctcttaaccccctaagtaatcatctgctataaatagagaaccttgcacacac 14184425  T
Q  288 ttgtatt-attcagaaaa 304  Q
    || |||| ||||||||||    
T  14184426 ttttattgattcagaaaa 14184443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 399
Target Start/End: Original strand, 23893615 - 23893712
Alignment:
Q  299 agaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgt 398  Q
    ||||| |||| ||| || ||||||||||||| |||| ||| |||||||   |||||||||||| | || ||||||||||||| ||| ||| |||||||||    
T  23893615 agaaagctagcggttcagggcaagggtcaagaatta-gagtttcaaggc--aggatctccatcctcctattgttctctctagagtaggttattctattgt 23893711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 13304978 - 13305014
Alignment:
Q  363 ttctcttgttctctctagggtatgtttttctattgtt 399  Q
    |||| |||||||||||||||||| |||||||||||||    
T  13304978 ttcttttgttctctctagggtatatttttctattgtt 13305014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 8e-37; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 227 - 396
Target Start/End: Complemental strand, 18281884 - 18281714
Alignment:
Q  227 tattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggt 325  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||| | || ||||||||| ||||  || ||||||||  ||    
T  18281884 tatttccactctcttaacccctaagtaatcatgcaatataaatagtgacccttgcacactcttttcttcattcagaaagctagcagtgcaaggcaaacgt 18281785  T
Q  326 caagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctatt 396  Q
    ||| ||| | |||||||||||  ||||| ||||||| | ||||||||||||||||||||| ||||||||||    
T  18281784 caaacatcaggagcttcaaggtagaggacctccatcgtcctcttgttctctctagggtatatttttctatt 18281714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 175 - 347
Target Start/End: Complemental strand, 23157510 - 23157337
Alignment:
Q  175 gggaggaagtgatgtttgcttgttttccaagccgtttttggtggaaaaaccctatttt-cactctcttaacccctaagtaatcatgcactataaatagag 273  Q
    |||| |||||| ||||| |||||||||||||| ||||| ||||||||| || |||||| ||||||||||||||||||||||||||||| |||||| ||||    
T  23157510 gggaagaagtgttgttttcttgttttccaagctgttttaggtggaaaacccatatttttcactctcttaacccctaagtaatcatgcattataaaaagag 23157411  T
Q  274 actcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaagga 347  Q
    || |||||||||| || |||| |||||||||  | |  ||||||||||||||||||||| | |||||||||||||    
T  23157410 acccttgcacactattttattcattcagaaagttggcagtacaaggcaagggtcaagca-tcagagcttcaagga 23157337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 237 - 399
Target Start/End: Complemental strand, 16622300 - 16622138
Alignment:
Q  237 ctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaa 335  Q
    ||||||| | |||||||||||| || ||||||||||||||||||||||  ||| |||| ||||| ||| |||||||| ||||||||| |||||||||||     
T  16622300 ctcttaaactctaagtaatcatacattataaatagagactcttgcacatacttttatttattcataaagctagtggttcaaggcaagagtcaagcatta- 16622202  T
Q  336 gagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgtt 399  Q
    ||| | ||||   |||| |||||||| |||||||||||||| ||||||||||||||||||||||    
T  16622201 gagttccaagactgagggtctccatccttctcttgttctctttagggtatgtttttctattgtt 16622138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 164 - 286
Target Start/End: Original strand, 25368017 - 25368140
Alignment:
Q  164 gcatggacacagggaggaagtgatgtttgcttgttttccaagccgtttttggtggaaaaaccctattttcactctcttaaccc-ctaagtaatcatgcac 262  Q
    ||||||||||| | | |||||||| |||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||  || ||||||||||||    
T  25368017 gcatggacacatgcaagaagtgatatttgcttgtttttcaagccatttttggtggaaaacccctattttcactctcttaaccctgtacgtaatcatgcac 25368116  T
Q  263 tataaatagagactcttgcacact 286  Q
    |||||||||||||  |||||||||    
T  25368117 tataaatagagaccattgcacact 25368140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 219 - 391
Target Start/End: Original strand, 18178575 - 18178746
Alignment:
Q  219 aaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaag 317  Q
    ||||||| |||||||  |||||||||||||||||||| ||||| ||| ||||||||| |||||||||| || |||| ||||| ||| ||| |||||||||    
T  18178575 aaaaaccttattttct-tctcttaacccctaagtaatgatgcaatatcaatagagacccttgcacacttttttattcattcaaaaagctaatggtacaag 18178673  T
Q  318 gcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgttttt 391  Q
    |||| |||||| || | ||||||| ||||  |||||||| |||| | ||||||||||||||||||||| |||||    
T  18178674 gcaatggtcaaaca-tcagagcttaaaggtggaggatcttcatcctcctcttgttctctctagggtattttttt 18178746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 236 - 399
Target Start/End: Complemental strand, 7742548 - 7742385
Alignment:
Q  236 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgt-attattcagaaaactagtggtacaaggcaagggtcaagcatta 334  Q
    |||||||||||||||| ||| ||||| ||||||||||||| ||||||||||||| | || ||||| |||  ||||||||||||||||||||||| ||| |    
T  7742548 tctcttaacccctaagcaatgatgcattataaatagagacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaagggtcaaacatca 7742449  T
Q  335 agagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgtt 399  Q
    | |||||||||   |||||||| |||||| |||||||| |||| | ||||| |||||||| ||||    
T  7742448 a-agcttcaagtcagaggatcttcatcatcctcttgttttctcaatggtatatttttctactgtt 7742385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 248 - 395
Target Start/End: Complemental strand, 19763542 - 19763395
Alignment:
Q  248 taagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaagg 346  Q
    |||||| | ||| ||||||||||  ||| |||  |||||||| |||| ||||| ||| |||||||||||||||||||||||| ||| || ||||||||||    
T  19763542 taagtagtgatgtactataaatatggacccttatacactcttttattcattcaaaaagctagtggtacaaggcaagggtcaaacatcaa-agcttcaagg 19763444  T
Q  347 acgaggatctccatcattctcttgttctctctagggtatgtttttctat 395  Q
      |||||||| |||| | ||||||||||||| |||||| ||||||||||    
T  19763443 cagaggatcttcatcctcctcttgttctctcaagggtaagtttttctat 19763395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 217 - 396
Target Start/End: Original strand, 20083929 - 20084108
Alignment:
Q  217 ggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtaca 315  Q
    ||||||||||||||||   ||| |||||||||||||||| ||| | |||||||||| || ||| || |||||| ||||  || ||||| |||| ||||||    
T  20083929 ggaaaaaccctatttttcttctgttaacccctaagtaatgatgtaatataaatagataccctttcatactcttttattcttttagaaagctagaggtaca 20084028  T
Q  316 aggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctatt 396  Q
    | | || ||||||||| | ||| ||||||||| || ||||  |||||| || |||||||||||||||||||||||| ||||    
T  20084029 aagaaaaggtcaagca-tcagaacttcaaggaagaagatcctcatcatcctgttgttctctctagggtatgtttttatatt 20084108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 243 - 399
Target Start/End: Original strand, 20695088 - 20695244
Alignment:
Q  243 acccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagctt 341  Q
    |||| |||||||| ||| |||||||||||||||||||||| ||  ||  ||| ||||||||| ||||||||| ||||||||||||||||| |   | |||    
T  20695088 acccgtaagtaatgatgtactataaatagagactcttgcaaaccttttcattcattcagaaagctagtggtagaaggcaagggtcaagca-tcgcaactt 20695186  T
Q  342 caaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgtt 399  Q
    |||||    |||||| |||| |  |||| |||||||||||||||||||||||||||||    
T  20695187 caaggcaatggatcttcatcctcttctttttctctctagggtatgtttttctattgtt 20695244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 42 - 161
Target Start/End: Complemental strand, 23157704 - 23157585
Alignment:
Q  42 aagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaactgcagaatttgcgcaaga 141  Q
    ||||||| | |||||||||||| ||||||| ||||||||||   | |||||| |||||||||| ||||||| ||||||||||||  ||||||||||| ||    
T  23157704 aagacaacagaaagtgaagaaagttcatttaaagttccaaggttttgcaagacagaagaacgcgtgaaaaagggtcgaaaactgttgaatttgcgcagga 23157605  T
Q  142 ggggatgcctcatgcgcccc 161  Q
     | | | |||||||||||||    
T  23157604 tgagctacctcatgcgcccc 23157585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 311 - 399
Target Start/End: Original strand, 22930492 - 22930579
Alignment:
Q  311 gtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgtt 399  Q
    |||||||||||||||||| ||| |||||||| ||||  ||||||||||||| | || ||||| |||||||| |||||||||||||||||    
T  22930492 gtacaaggcaagggtcaaacat-aagagctttaaggtagaggatctccatcctccttttgttatctctaggttatgtttttctattgtt 22930579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 41 - 132
Target Start/End: Original strand, 19331723 - 19331814
Alignment:
Q  41 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaactgcagaatt 132  Q
    ||||||||||||| ||||||| |  ||||||||||||  ||||||| |||| | ||||||||| |||||||| |||||||||||||| ||||    
T  19331723 gaagacaatacaatgtgaagataagtcatttgaagttataagacattgcaaaacagaagaacgtttgaaaaaaggtcgaaaactgcataatt 19331814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 236 - 334
Target Start/End: Original strand, 25681049 - 25681148
Alignment:
Q  236 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgta-ttattcagaaaactagtggtacaaggcaagggtcaagcatta 334  Q
    |||||||| ||||||| ||||||   |||||||||||||| |||||||||  |  || ||||||||||| |||||||| |||||||||||||||||||||    
T  25681049 tctcttaaaccctaagaaatcatttgctataaatagagacacttgcacacattattaattattcagaaagctagtggttcaaggcaagggtcaagcatta 25681148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 18872953 - 18872907
Alignment:
Q  41 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatc 87  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||    
T  18872953 gaagacaatacaaattgaagaaaattcatttgaagttccaagacatc 18872907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 305 - 399
Target Start/End: Complemental strand, 25594246 - 25594153
Alignment:
Q  305 ctagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgtt 399  Q
    |||||||| |||||||||||| || ||| | ||||| |||||| |||| ||| |||| | ||||||||||||||| | |||||||||||||||||    
T  25594246 ctagtggttcaaggcaagggttaaacatca-gagctccaaggaagagggtcttcatcctcctcttgttctctctaagatatgtttttctattgtt 25594153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 399
Target Start/End: Complemental strand, 26329651 - 26329555
Alignment:
Q  299 agaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgt 398  Q
    |||| |||| |||| ||||||||||||||||||||| |||||||||||   ||||| ||  || ||||||| | ||||||||||||||||||||||||||    
T  26329651 agaacactaatggttcaaggcaagggtcaagcatta-gagcttcaaggc--aggatttct-tccttctcttatcctctctagggtatgtttttctattgt 26329556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 397
Target Start/End: Original strand, 30791045 - 30791226
Alignment:
Q  214 ggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgt-attattcagaaaactagtggt 312  Q
    ||||||||||||| |||||   ||||||||  |||||||||| |||  ||||| ||| |||| ||||||||||||| | ||||||||||||  | || |     
T  30791045 ggtggaaaaacccaattttt--tctcttaaatcctaagtaatgatgtgctatatatatagacccttgcacactcttctaattattcagaaagttcgtagg 30791142  T
Q  313 acaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattg 397  Q
    |||||| |||| ||||||| | ||||||| ||||  ||||||||  ||  | |||||||||||||||||| ||| || |||||||    
T  30791143 acaaggaaaggttcaagca-tcagagctttaaggcagaggatcttgattctcctcttgttctctctagggcatgcttgtctattg 30791226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 236 - 323
Target Start/End: Complemental strand, 17695115 - 17695027
Alignment:
Q  236 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagg 323  Q
    |||||||| ||||||||||| |||||||||||||||||| |||||||| | ||| |||| ||||| |||  |||  |||||||||||||    
T  17695115 tctcttaaaccctaagtaatgatgcactataaatagagagtcttgcacgcacttttattcattcaaaaagttagatgtacaaggcaagg 17695027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 336 - 390
Target Start/End: Complemental strand, 22643508 - 22643454
Alignment:
Q  336 gagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttt 390  Q
    |||||||||||| || ||| |||||||| ||||||||||||||||||||| ||||    
T  22643508 gagcttcaaggaagaagatatccatcatcctcttgttctctctagggtatttttt 22643454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 399
Target Start/End: Complemental strand, 31341001 - 31340851
Alignment:
Q  247 ctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaag 345  Q
    |||||||||  || ||||||||||||||| |||||||||||||  ||| |||| |||| ||||   ||||| ||||||||||| |||  | |||||||||    
T  31341001 ctaagtaatggtgtactataaatagagacccttgcacactcttaaattcattctgaaagctagatatacaaagcaagggtcaaacatcga-agcttcaag 31340903  T
Q  346 gacgaggatctccatcattctcttgttctctctagggtatgtttttctattgtt 399  Q
    |  ||||||||| ||| |  |||||||||||||    |||||||||||||||||    
T  31340902 gcagaggatctcaatcctcttcttgttctctct--tatatgtttttctattgtt 31340851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 41 - 112
Target Start/End: Complemental strand, 19763787 - 19763716
Alignment:
Q  41 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaa 112  Q
    ||||| ||||||||||||||||| ||||||| |||||||||   || | ||||| |||||||||| ||||||    
T  19763787 gaagataatacaaagtgaagaaaattcatttcaagttccaaaggattgaaagatggaagaacgctcgaaaaa 19763716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 399
Target Start/End: Complemental strand, 17381554 - 17381504
Alignment:
Q  349 gaggatctccatcattctcttgttctctctagggtatgtttttctattgtt 399  Q
    ||||||||||||| | || |||||||||||||||||||| ||| |||||||    
T  17381554 gaggatctccatcctccttttgttctctctagggtatgtatttatattgtt 17381504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 275
Target Start/End: Complemental strand, 24410665 - 24410546
Alignment:
Q  153 atgcgccccacgcatggacacagggaggaagtgatgtttgcttgttttccaagccgtttttggtggaaaaa-ccctattttcactctcttaacccctaag 251  Q
    ||||||||| |||||||   |||| || ||||  ||||||||||||||||||||    ||||||||||||| ||| | |||   ||||||||| ||||||    
T  24410665 atgcgccccgcgcatggctgcaggcagaaagtattgtttgcttgttttccaagc----tttggtggaaaaaaccccacttttcttctcttaactcctaag 24410570  T
Q  252 taatcatgcactataaatagagac 275  Q
    | || |||||||||||||| ||||    
T  24410569 ttataatgcactataaataaagac 24410546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 366 - 399
Target Start/End: Complemental strand, 18451766 - 18451733
Alignment:
Q  366 tcttgttctctctagggtatgtttttctattgtt 399  Q
    |||||||||||||||| |||||||||||||||||    
T  18451766 tcttgttctctctaggatatgtttttctattgtt 18451733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 322
Target Start/End: Original strand, 24846613 - 24846674
Alignment:
Q  262 ctataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaag 322  Q
    ||||||||||| |||||||||| | ||| |||| |||||||||| | |||||||||||||||    
T  24846613 ctataaatagacactcttgcacgcacttttattcattcagaaaattggtggtacaaggcaag 24846674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 26329970 - 26329933
Alignment:
Q  42 aagacaatacaaagtgaagaaacttcatttgaagttcc 79  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  26329970 aagacaatacaaagtgaagaaaattcatttcaagttcc 26329933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 399
Target Start/End: Complemental strand, 12265140 - 12265104
Alignment:
Q  363 ttctcttgttctctctagggtatgtttttctattgtt 399  Q
    |||||||||||||||||| |||| |||||||||||||    
T  12265140 ttctcttgttctctctagtgtatatttttctattgtt 12265104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 24268670 - 24268706
Alignment:
Q  363 ttctcttgttctctctagggtatgtttttctattgtt 399  Q
    |||||||||||||| |||||||||||||| |||||||    
T  24268670 ttctcttgttctctttagggtatgtttttatattgtt 24268706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 24345300 - 24345336
Alignment:
Q  363 ttctcttgttctctctagggtatgtttttctattgtt 399  Q
    |||||||||||||| |||||||||||||| |||||||    
T  24345300 ttctcttgttctctttagggtatgtttttatattgtt 24345336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 30072330 - 30072366
Alignment:
Q  42 aagacaatacaaagtgaagaaacttcatttgaagttc 78  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  30072330 aagacaatacaaagtgaagaaatttcatttcaagttc 30072366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 195 - 396
Target Start/End: Original strand, 12682 - 12891
Alignment:
Q  195 tgttttccaagccgtttttggtggaaaaaccctattttcactctc----ttaacccct-aagtaatcatgcactataaatagagactcttgcacactctt 289  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    ||||||||| ||||||| ||||||||||||||||||| |||||||||   |    
T  12682 tgttttccaagccgttttgggtggaaaaaccctattttcactctcttaattaacccctaaagtaattatgcactataaatagagacccttgcacaccagt 12781  T
Q  290 gtatt-attcagaaaactagtggtacaaggcaagggt--caagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatg 386  Q
     |||| ||||||||| |||| ||||||||||||||||   |||||| |   ||||||| |  ||||||||||||| | |||||||||||||||| | |||    
T  12782 ttattcattcagaaagctagcggtacaaggcaagggttcaaagcatcatcggcttcaaagcagaggatctccatcctcctcttgttctctctagagaatg 12881  T
Q  387 tttttctatt 396  Q
     |||||||||    
T  12882 attttctatt 12891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 12457 - 12538
Alignment:
Q  41 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaa 122  Q
    ||||| ||||||||||||||||| || |||| |||||||||| | || |||||| |||||| |   |||||| |||||||||    
T  12457 gaagaaaatacaaagtgaagaaaatttatttcaagttccaaggcgtcacaagatggaagaagggccgaaaaagggtcgaaaa 12538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 218 - 396
Target Start/End: Original strand, 3573 - 3758
Alignment:
Q  218 gaaaaaccctattttcactctcttaa----cccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggt 312  Q
    ||||||||||||||||||||||||||    |||||||||||| ||||||||||||||||||| ||||||||||  | |||| ||||| |||||||| |||    
T  3573 gaaaaaccctattttcactctcttaattatcccctaagtaattatgcactataaatagagacccttgcacactagtttattcattcataaaactagcggt 3672  T
Q  313 acaaggcaa-gggtca-agcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctatt 396  Q
    ||| || || |||||| ||||| |   ||||||| |  ||||||||||||| | |||||||||||||||| | ||| |||||||||    
T  3673 acagggtaaggggtcagagcatcatcggcttcaaagcagaggatctccatcctcctcttgttctctctagagaatgattttctatt 3758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 2021 - 2102
Alignment:
Q  41 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaa 122  Q
    ||||| ||||||||||||||||| || |||| |||||||||| | || |||||| |||||| |   |||||| |||||||||    
T  2021 gaagaaaatacaaagtgaagaaaatttatttcaagttccaaggcgtcacaagatggaagaagggccgaaaaagggtcgaaaa 2102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 240 - 399
Target Start/End: Original strand, 22262835 - 22262994
Alignment:
Q  240 ttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagag 338  Q
    |||| ||||||||||| |||||| |||||||||||||||||||||| ||| |||| ||| ||||| |||| ||| |||||||||||||||||| | | ||    
T  22262835 ttaaaccctaagtaatgatgcaccataaatagagactcttgcacacacttttattcattgagaaagctagcggttcaaggcaagggtcaagca-tcatag 22262933  T
Q  339 cttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgtt 399  Q
    ||||||||  ||||||| ||||| |  |||| || ||||||  ||||||||||||||||||    
T  22262934 cttcaaggtagaggatcgccatcctcttcttattttctctaatgtatgtttttctattgtt 22262994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 236 - 346
Target Start/End: Complemental strand, 9396264 - 9396154
Alignment:
Q  236 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcatta 334  Q
    |||||||| || |||| ||| |||||||||||||| |||||| ||||||| ||  |||| ||||| |||  ||||||||||||||||||||||||||||     
T  9396264 tctcttaaaccttaagaaatgatgcactataaatatagactcgtgcacacactcttattcattcaaaaagatagtggtacaaggcaagggtcaagcatt- 9396166  T
Q  335 agagcttcaagg 346  Q
    ||||||||||||    
T  9396165 agagcttcaagg 9396154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 250 - 399
Target Start/End: Original strand, 16528117 - 16528266
Alignment:
Q  250 agtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggac 348  Q
    ||||||||||  ||||||||||||||  ||||||||  |  |||| ||| ||||| ||||| || ||||| ||||||||||||||  ||| | |||||      
T  16528117 agtaatcatgtgctataaatagagaccattgcacacattattattcatttagaaagctagttgttcaaggaaagggtcaagcattg-gagttccaaggca 16528215  T
Q  349 gaggatctccatcattctcttgttctctctagggtatgtttttctattgtt 399  Q
    |||||||| |||| | ||||||||||||||||||||||||||| |||||||    
T  16528216 gaggatcttcatcctcctcttgttctctctagggtatgtttttgtattgtt 16528266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 263 - 391
Target Start/End: Complemental strand, 13830542 - 13830414
Alignment:
Q  263 tataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatc 361  Q
    |||||||| |||| ||||||||| ||| |||| ||||| |||  | |||||| |||||||||||||| ||||| ||| | |||||| | |||||||||||    
T  13830542 tataaataaagacccttgcacacacttttattcattcataaagtttgtggtataaggcaagggtcaaacatta-gagttccaaggaaggggatctccatc 13830444  T
Q  362 attctcttgttctctctagggtatgttttt 391  Q
     | |||||||||||||||||||||| ||||    
T  13830443 ctcctcttgttctctctagggtatgatttt 13830414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 295 - 397
Target Start/End: Complemental strand, 26499457 - 26499356
Alignment:
Q  295 attcagaaaactagtggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttcta 394  Q
    ||||||||| |||| || ||||||||||||| |||||| | || |||||||||  | |||||||||| | ||||||||||||||| ||||||||||| ||    
T  26499457 attcagaaagctagaggcacaaggcaagggttaagcatca-gatcttcaaggaaaatgatctccatcctcctcttgttctctctaaggtatgtttttata 26499359  T
Q  395 ttg 397  Q
    |||    
T  26499358 ttg 26499356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 317
Target Start/End: Original strand, 28178365 - 28178531
Alignment:
Q  152 catgcgccccacgcatggacacagggaggaagtgatgtttgcttgttttccaagccgtttttggtggaaaaaccctattttcactctcttaacccctaag 251  Q
    ||||||||||  ||||||| ||||  |||||||| |||||||||   |  |||| |||||||| ||||||| ||| |||||||||   |||| ||||| |    
T  28178365 catgcgccccgtgcatggaaacagctaggaagtgttgtttgcttaactctcaagtcgtttttgttggaaaaccccaattttcacttctttaatccctatg 28178464  T
Q  252 taatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaag 317  Q
    ||  ||||||||||||||| || |||||||  ||| || |||| ||||||||| |||||||||||||    
T  28178465 tagccatgcactataaatataggctcttgccgactattttattcattcagaaagctagtggtacaag 28178531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 257 - 328
Target Start/End: Complemental strand, 10976710 - 10976638
Alignment:
Q  257 atgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaa 328  Q
    |||||||||||||||||||||| |||||| ||| |||| ||||||||||||| ||||||||||  ||||||||    
T  10976710 atgcactataaatagagactctggcacacacttttattcattcagaaaactattggtacaaggagagggtcaa 10976638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 218 - 325
Target Start/End: Complemental strand, 17198487 - 17198379
Alignment:
Q  218 gaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaa 316  Q
    ||||| |||||||||   |||||||||||||||||||| ||| | | ||||||||||| |||||| |||||| |||| ||| | |||||||| | |||||    
T  17198487 gaaaacccctatttttcttctcttaacccctaagtaatgatgtattctaaatagagacccttgcatactcttttattcatttataaaactagcgatacaa 17198388  T
Q  317 ggcaagggt 325  Q
    |||||||||    
T  17198387 ggcaagggt 17198379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 135
Target Start/End: Complemental strand, 26499795 - 26499655
Alignment:
Q  4 gatcgaggatatgaagattgaagttcaatagttcttagaag----------acaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaaga 93  Q
    ||||||||||||||||||||||| ||||| |||||||||||          |||||||||||| |||||| ||||||| ||||| |||| ||| ||||||    
T  26499795 gatcgaggatatgaagattgaagatcaatggttcttagaaggtttttgaagacaatacaaagtaaagaaaattcatttcaagtttcaaggcattgcaaga 26499696  T
Q  94 tagaagaacgcttgaaaaatggtcgaaaactgcagaatttgc 135  Q
      ||| |||||| |||||| |  ||||||||||| |||||||    
T  26499695 cggaacaacgctcgaaaaa-gaacgaaaactgcaaaatttgc 26499655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 294
Target Start/End: Original strand, 15318459 - 15318564
Alignment:
Q  189 tttgcttgttttccaagccgtttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactct 288  Q
    |||| ||||||| ||||| | |||| ||||||||||| ||||||   ||| ||||||| || ||||| ||||||||| ||||||||||||||| ||| ||    
T  15318459 tttgtttgtttttcaagctgattttagtggaaaaaccttatttttcatcttttaacccatacgtaatgatgcactatgaatagagactcttgcgcacact 15318558  T
Q  289 tgtatt 294  Q
    | ||||    
T  15318559 tttatt 15318564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 313 - 399
Target Start/End: Original strand, 15382214 - 15382302
Alignment:
Q  313 acaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcat--tctcttgttctctctagggtatgtttttctattgtt 399  Q
    |||||||||||||||||||| |||||||||||||  || ||||| |||| |  ||| || | |||||||||||||||||||| ||||||    
T  15382214 acaaggcaagggtcaagcatcaagagcttcaaggcagacgatcttcatcctcctcttttatactctctagggtatgtttttcaattgtt 15382302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 332
Target Start/End: Complemental strand, 32930133 - 32930036
Alignment:
Q  236 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcat 332  Q
    ||||||||  |||||||||| || || |||||||||||||||||||| || ||| |||| ||||||||| |||| |||||||| ||| | ||||||||    
T  32930133 tctcttaattcctaagtaatgatccattataaatagagactcttgcatacacttttattcattcagaaagctagcggtacaagacaatgatcaagcat 32930036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 294
Target Start/End: Complemental strand, 12972011 - 12971956
Alignment:
Q  239 cttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt 294  Q
    ||||||||||| ||||| ||||||||||||||||||| |||||| |||||| ||||    
T  12972011 cttaacccctacgtaatgatgcactataaatagagacccttgcagactcttttatt 12971956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 30355480 - 30355523
Alignment:
Q  1 aaggatcgaggatatgaagattgaagttcaatagttcttagaag 44  Q
    |||||||||||||||||||||||||| ||||| |||||||||||    
T  30355480 aaggatcgaggatatgaagattgaagatcaatcgttcttagaag 30355523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 365 - 399
Target Start/End: Complemental strand, 30235902 - 30235868
Alignment:
Q  365 ctcttgttctctctagggtatgtttttctattgtt 399  Q
    |||||||||||||||||||||||||||||||||||    
T  30235902 ctcttgttctctctagggtatgtttttctattgtt 30235868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 41 - 122
Target Start/End: Complemental strand, 24507344 - 24507263
Alignment:
Q  41 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaa 122  Q
    ||||| ||||||||||||||||| || |||| |||||||||| | || ||||||||||||| |   |||||| |||||||||    
T  24507344 gaagaaaatacaaagtgaagaaaatttatttcaagttccaaggcgtcacaagatagaagaagggccgaaaaagggtcgaaaa 24507263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 17198719 - 17198652
Alignment:
Q  45 acaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaa 112  Q
    ||||||||||||||| ||| || |||| |||||||||| ||| |||||| |||||| |||| ||||||    
T  17198719 acaatacaaagtgaataaaatttatttaaagttccaaggcattgcaagacagaagatcgctcgaaaaa 17198652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 399
Target Start/End: Original strand, 15318596 - 15318682
Alignment:
Q  313 acaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgtt 399  Q
    ||||||||  ||| |||||| |||||||| ||||| || |||||  |||   || ||||||||||||||||||||||||| ||||||    
T  15318596 acaaggcagtggtgaagcatcaagagctttaaggaagatgatctttatccaccttttgttctctctagggtatgtttttcaattgtt 15318682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 279
Target Start/End: Original strand, 15349108 - 15349198
Alignment:
Q  189 tttgcttgttttccaagccgtttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactctt 279  Q
    |||| ||||||| ||||  | |||| ||||||||||||||||||   ||| ||||||| || ||||| ||  |||||||||||||||||||    
T  15349108 tttgtttgtttttcaagttgattttagtggaaaaaccctatttttcatcttttaacccatacgtaataatatactataaatagagactctt 15349198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 294
Target Start/End: Original strand, 15369135 - 15369209
Alignment:
Q  220 aaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt 294  Q
    |||||||||||||   ||| ||||||| || ||||| |||||||||||||||||| |||||| ||| ||| ||||    
T  15369135 aaaaccctatttttcatcttttaacccatacgtaatgatgcactataaatagagattcttgcgcacacttttatt 15369209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 399
Target Start/End: Original strand, 15375965 - 15376051
Alignment:
Q  313 acaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgtt 399  Q
    |||||| ||||||| | ||| | |||||||||||  || |||||| ||| |   |||||||||||||||||||||||||| ||||||    
T  15375965 acaaggtaagggtccatcatcaggagcttcaaggcagacgatctcaatcctcaacttgttctctctagggtatgtttttcaattgtt 15376051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 79
Target Start/End: Original strand, 15575137 - 15575175
Alignment:
Q  41 gaagacaatacaaagtgaagaaacttcatttgaagttcc 79  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  15575137 gaagacaatacaaagtgaagaaaattcatttcaagttcc 15575175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 399
Target Start/End: Original strand, 15349259 - 15349331
Alignment:
Q  327 aagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgtt 399  Q
    |||||| |||||||| ||||| || |||||  |||   || ||||||||||||||||||||||||| ||||||    
T  15349259 aagcatcaagagctttaaggaagatgatctttatccgccttttgttctctctagggtatgtttttcaattgtt 15349331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 281
Target Start/End: Original strand, 15375857 - 15375920
Alignment:
Q  218 gaaaaaccct-attttcactctcttaacccctaagtaatcatgcactataaatagagactcttgc 281  Q
    |||||||||| ||||||| ||| ||||| | || ||||| |||||||||||||||||||||||||    
T  15375857 gaaaaacccttattttca-tcttttaactcatacgtaatgatgcactataaatagagactcttgc 15375920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 17860348 - 17860312
Alignment:
Q  43 agacaatacaaagtgaagaaacttcatttgaagttcc 79  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  17860348 agacaatacaaagtgaagaaaattcatttcaagttcc 17860312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 41 - 160
Target Start/End: Complemental strand, 228088 - 227969
Alignment:
Q  41 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaactgcagaatttgcgcaag 140  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||| ||||||  ||||||||  ||||||| ||||||||| ||| ||||| ||||| |    
T  228088 gaagacaatacaaagtgaagaaaattcatttcaagttccaagacattgcaagacggaagaacgggtgaaaaagggtcgaaaattgctgaattcgcgcagg 227989  T
Q  141 aggggatgcctcatgcgccc 160  Q
    || || || |||| ||||||    
T  227988 agaggctgtctcaagcgccc 227969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 152 - 239
Target Start/End: Complemental strand, 227905 - 227818
Alignment:
Q  152 catgcgccccacgcatggacacagggaggaagtgatgtttgcttgttttccaagccgtttttggtggaaaaaccctattttcactctc 239  Q
    |||| ||||||| ||||||||||   |||||||| ||||| ||||||||||||||  |||||||| |||||||| |||||||||||||    
T  227905 catgagccccacacatggacacaaccaggaagtgctgttttcttgttttccaagctatttttggttgaaaaaccatattttcactctc 227818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 350 - 399
Target Start/End: Complemental strand, 227747 - 227698
Alignment:
Q  350 aggatctccatcattctcttgttctctctagggtatgtttttctattgtt 399  Q
    |||||||||||| | |||||||||||||||| ||||||||||| ||||||    
T  227747 aggatctccatcctcctcttgttctctctagagtatgtttttcaattgtt 227698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 210 - 399
Target Start/End: Complemental strand, 11355 - 11166
Alignment:
Q  210 ttttggtggaaaaaccctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactag 308  Q
    |||||||  ||||||| |||||| | |||  ||| || |||||||| ||| ||||||||||||||| |||||||||| || |||| ||||| ||| || |    
T  11355 ttttggttaaaaaaccttatttttattcttgtaatccttaagtaatgatgtactataaatagagacacttgcacacttttttattcattcaaaaagcttg 11256  T
Q  309 tggtacaaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgtt 399  Q
    | ||||||||||||||| |||| || ||||||||||||  || ||| | |||| | ||| ||||||||||| ||||| |||||||||||||    
T  11255 tagtacaaggcaagggttaagc-ttcagagcttcaaggcagatgattttcatcctcctcatgttctctctaaggtatatttttctattgtt 11166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 11599 - 11548
Alignment:
Q  41 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaaga 93  Q
    ||||||||||||||||||||||| ||||||| ||| |||||| ||| ||||||    
T  11599 gaagacaatacaaagtgaagaaaattcatttcaag-tccaaggcattgcaaga 11548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 236 - 399
Target Start/End: Complemental strand, 8393 - 8230
Alignment:
Q  236 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcatta 334  Q
    |||||| | ||||||||||| ||   |||||||||||||| |||||| ||  || |||| ||||||||| ||| || ||||| ||||||||||||||| |    
T  8393 tctctttaaccctaagtaataatatgctataaatagagacccttgcagacatttttattcattcagaaagctaatgttacaacgcaagggtcaagcatca 8294  T
Q  335 agagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgtt 399  Q
     ||| | |||||  |||||| |||||| | |||||||||||||||| ||||||||||||||||||    
T  8293 -gagttccaaggtagaggatatccatcctcctcttgttctctctagtgtatgtttttctattgtt 8230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 236 - 399
Target Start/End: Complemental strand, 11423 - 11260
Alignment:
Q  236 tctcttaacccctaagtaatcatgcactataaatagagactcttgcacactcttgtatt-attcagaaaactagtggtacaaggcaagggtcaagcatta 334  Q
    ||||||||  |||||||||| ||   |||||||||||||| ||||||||   || |||| ||||||||| |||  | ||||||||||||||||||||| |    
T  11423 tctcttaaatcctaagtaataatatgctataaatagagacccttgcacatatttttattcattcagaaagctaacgttacaaggcaagggtcaagcatca 11324  T
Q  335 agagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgtt 399  Q
    | || | |||||  |||||| |||||| | |||||||||||||||| ||||||||||||||||||    
T  11323 a-agttccaaggtagaggatatccatcctcctcttgttctctctagtgtatgtttttctattgtt 11260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1149 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold1149
Description:

Target: scaffold1149; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 41 - 121
Target Start/End: Original strand, 2000 - 2080
Alignment:
Q  41 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaa 121  Q
    |||||||||||||||| |||||| ||||||| ||||||||| || | |||||| |||||||||  ||||||| ||||||||    
T  2000 gaagacaatacaaagtaaagaaaattcatttcaagttccaatactttgcaagacagaagaacgggtgaaaaagggtcgaaa 2080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1149; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 283
Target Start/End: Original strand, 2246 - 2301
Alignment:
Q  226 ctattttcactctcttaacccctaagtaatcatgcactataaatagagactcttgcac 283  Q
    ||||||| |||| |||||||||||||||||  |||||  |||||||||||||||||||    
T  2246 ctatttttactcccttaacccctaagtaatattgcac--taaatagagactcttgcac 2301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 314 - 399
Target Start/End: Complemental strand, 5316 - 5235
Alignment:
Q  314 caaggcaagggtcaagcattaagagcttcaaggacgaggatctccatcattctcttgttctctctagggtatgtttttctattgtt 399  Q
    ||||||||||||||||||| | |||||||||||   ||||| ||  |||||||||||||||||||||| |||||||||||||||||    
T  5316 caaggcaagggtcaagcatca-gagcttcaaggc--aggatttct-tcattctcttgttctctctaggatatgtttttctattgtt 5235  T

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Target: scaffold0650; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 5720 - 5678
Alignment:
Q  1 aaggatcgaggatatgaagattgaagttcaatagttcttagaag 44  Q
    ||||||||||||||||||||||||| |||||| |||||||||||    
T  5720 aaggatcgaggatatgaagattgaa-ttcaatggttcttagaag 5678  T

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Target: scaffold0185 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 132
Target Start/End: Original strand, 2713 - 2804
Alignment:
Q  41 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtcgaaaactgcagaatt 132  Q
    |||||||||||| ||||||||||  |||||| | ||||||||| |   |||||||||||||| || |||||| || ||||||||||| ||||    
T  2713 gaagacaatacagagtgaagaaaactcatttcatgttccaagataggtcaagatagaagaacactcgaaaaagggacgaaaactgcaaaatt 2804  T

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Target: scaffold0362 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 8236 - 8272
Alignment:
Q  363 ttctcttgttctctctagggtatgtttttctattgtt 399  Q
    ||||||||||||||||||||||| |||||||||||||    
T  8236 ttctcttgttctctctagggtatttttttctattgtt 8272  T

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Target: scaffold0836 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 2824 - 2886
Alignment:
Q  44 gacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgctt 106  Q
    |||||||||||||||||||| ||||||| ||| ||||||  ||| ||||| | ||||||||||    
T  2824 gacaatacaaagtgaagaaaattcatttaaagatccaaggtatcacaagacaaaagaacgctt 2886  T

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Target: scaffold0100 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 399
Target Start/End: Original strand, 37568 - 37600
Alignment:
Q  367 cttgttctctctagggtatgtttttctattgtt 399  Q
    |||||||||||||||||||||||||| ||||||    
T  37568 cttgttctctctagggtatgtttttcaattgtt 37600  T

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Target: scaffold0043 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 117
Target Start/End: Original strand, 58963 - 59038
Alignment:
Q  41 gaagacaatacaaagtgaagaaacttcatttgaagttccaagacatcgcaagatagaagaacgcttgaaaaatggtc 117  Q
    ||||||||| |||| |||||||| ||||||| ||||||||||  ||| |||||   |||||||||||||||| ||||    
T  58963 gaagacaatgcaaaatgaagaaa-ttcatttaaagttccaaggtatcacaagacgaaagaacgcttgaaaaagggtc 59038  T

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