View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6978_low_25 (Length: 360)

Name: NF6978_low_25
Description: NF6978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6978_low_25
NF6978_low_25
[»] chr8 (10 HSPs)
chr8 (85-355)||(8357991-8358254)
chr8 (87-278)||(23686081-23686274)
chr8 (87-278)||(45247398-45247589)
chr8 (87-278)||(366694-366888)
chr8 (1-43)||(8358294-8358337)
chr8 (90-137)||(40262467-40262514)
chr8 (91-152)||(12158810-12158871)
chr8 (93-134)||(15274969-15275010)
chr8 (93-134)||(15455338-15455379)
chr8 (93-134)||(43214618-43214659)
[»] chr7 (4 HSPs)
chr7 (85-355)||(18289700-18289967)
chr7 (1-45)||(18290005-18290048)
chr7 (248-312)||(9711233-9711297)
chr7 (99-139)||(9711402-9711442)
[»] chr3 (8 HSPs)
chr3 (85-355)||(20780194-20780456)
chr3 (87-278)||(30170327-30170521)
chr3 (87-192)||(39186925-39187029)
chr3 (1-43)||(20780112-20780154)
chr3 (96-158)||(6437433-6437495)
chr3 (228-317)||(32970450-32970539)
chr3 (90-146)||(37835613-37835669)
chr3 (229-281)||(50244364-50244416)
[»] scaffold0216 (2 HSPs)
scaffold0216 (87-355)||(29516-29784)
scaffold0216 (3-45)||(29824-29866)
[»] scaffold0284 (4 HSPs)
scaffold0284 (87-355)||(6772-7040)
scaffold0284 (1-45)||(7082-7126)
scaffold0284 (229-281)||(199-251)
scaffold0284 (229-281)||(9014-9066)
[»] chr4 (16 HSPs)
chr4 (87-355)||(6560451-6560715)
chr4 (87-355)||(317143-317411)
chr4 (85-242)||(13918857-13919014)
chr4 (232-355)||(36697430-36697553)
chr4 (296-355)||(13919022-13919081)
chr4 (299-358)||(2041137-2041196)
chr4 (90-137)||(52541065-52541112)
chr4 (1-45)||(317059-317103)
chr4 (1-45)||(6560367-6560411)
chr4 (97-140)||(13232939-13232982)
chr4 (91-134)||(13910092-13910135)
chr4 (229-271)||(4278685-4278727)
chr4 (1-45)||(13918776-13918818)
chr4 (229-281)||(6555308-6555360)
chr4 (248-312)||(13577500-13577564)
chr4 (99-139)||(13577669-13577709)
[»] scaffold0003 (1 HSPs)
scaffold0003 (85-355)||(49948-50208)
[»] chr6 (6 HSPs)
chr6 (85-355)||(27437154-27437414)
chr6 (89-242)||(15879460-15879613)
chr6 (148-278)||(21988356-21988486)
chr6 (296-355)||(15879621-15879680)
chr6 (91-136)||(9450903-9450948)
chr6 (1-45)||(15879374-15879416)
[»] chr1 (6 HSPs)
chr1 (87-278)||(15524187-15524380)
chr1 (87-278)||(22541372-22541565)
chr1 (87-278)||(19100590-19100783)
chr1 (1-45)||(49883272-49883316)
chr1 (90-137)||(3836190-3836237)
chr1 (91-141)||(43385292-43385342)
[»] scaffold0380 (1 HSPs)
scaffold0380 (91-151)||(16669-16729)
[»] chr5 (5 HSPs)
chr5 (87-278)||(30324854-30325049)
chr5 (92-157)||(19319059-19319124)
chr5 (94-141)||(11769935-11769982)
chr5 (91-137)||(7743865-7743911)
chr5 (229-281)||(9025725-9025777)
[»] chr2 (6 HSPs)
chr2 (1-45)||(31963436-31963480)
chr2 (90-144)||(36727083-36727137)
chr2 (90-134)||(6910224-6910268)
chr2 (91-134)||(45053813-45053856)
chr2 (87-141)||(31963341-31963395)
chr2 (252-281)||(39403464-39403493)
[»] scaffold0211 (1 HSPs)
scaffold0211 (229-281)||(16412-16464)


Alignment Details
Target: chr8 (Bit Score: 153; Significance: 5e-81; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 85 - 355
Target Start/End: Complemental strand, 8358254 - 8357991
Alignment:
Q  85 cgtaacttctcatgaaagaaaggaacataaatctccatccattaaatcaccaccaactcaccatttttaccatgacataacttcacctaattttatttgg 184  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||  |||| ||||||||||||||    
T  8358254 cgtaacttctcatgaaagaaaggaacataaacctccatccgttaaatcaccaccaactcaccatttttaccatgatatatgttcatctaattttatttgg 8358155  T
Q  185 ctttgttaccgaatcatagatgtggagagtcttgcacttatatggagagatgttaacatgtcttatatgagttaaagtttcagattggatgcaagagaat 284  Q
    |||||||||| ||||| |||||||||||||||  |||||| | ||||||||||||| ||||||||||||||||||| ||| | ||||||||        |    
T  8358154 ctttgttaccaaatcacagatgtggagagtctcacacttaaagggagagatgttaaaatgtcttatatgagttaaatttttaaattggatg-------tt 8358062  T
Q  285 acaatgacaaacatataagtgagatgacccataaatccattgcctttaggacttggatgaagatgtgatgt 355  Q
    | | ||| |||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||    
T  8358061 atattgaaaaacatataagtgacatgacccataaatccaatgcctttaggatttggatgaagatgtgatgt 8357991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 87 - 278
Target Start/End: Original strand, 23686081 - 23686274
Alignment:
Q  87 taacttctcatgaaagaaaggaacataaatctccatccattaaatcaccaccaactcaccattttt--accatgacataacttcacctaattttatttgg 184  Q
    ||||||||||||||| ||| |||| |||| | |||| ||||||||||||| ||||  ||| |||||  ||||| | || |||||| || |||||||||||    
T  23686081 taacttctcatgaaataaaagaacgtaaacccccatgcattaaatcaccatcaaccgaccttttttttaccatcaaatgacttcatctgattttatttgg 23686180  T
Q  185 ctttgttaccgaatcatagatgtggagagtcttgcacttatatggagagatgttaacatgtcttatatgagttaaagtttcagattggatgcaa 278  Q
    || ||||||  |||||  |||| |||||||||  ||| || | | ||||||||||| |||| |||||| |||||||||| ||||||| ||||||    
T  23686181 ctatgttacaaaatcaccgatgcggagagtctaacacgtaaaggaagagatgttaatatgtgttatattagttaaagttccagattgcatgcaa 23686274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 278
Target Start/End: Original strand, 45247398 - 45247589
Alignment:
Q  87 taacttctcatgaaagaaaggaacataaatctccatccattaaatcaccaccaactcaccatttttaccatgacataacttcacctaattttatttggct 186  Q
    ||||||||||||||  ||| ||| ||||| |||||||||||||||||||| ||||  ||| ||||||| |||| || | |||| || |||||||||||||    
T  45247398 taacttctcatgaactaaaagaaaataaacctccatccattaaatcaccatcaaccaaccttttttactatgaaatgaattcatctgattttatttggct 45247497  T
Q  187 ttgttaccgaatcatagatgtggagagtcttgcacttatatggagagatgttaacatgtcttatatgagttaaagtttcagattggatgcaa 278  Q
     ||||||  |||||   | | |||||||||  ||| || ||  | ||||||||| |||| |||||| ||||||||||  ||||| |||||||    
T  45247498 atgttactaaatcactaacgcggagagtctgacacgtaaattaatagatgttaatatgtgttatatcagttaaagttctagatttgatgcaa 45247589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 278
Target Start/End: Original strand, 366694 - 366888
Alignment:
Q  87 taacttctcatgaaagaaaggaacataaatctccatccattaaatcaccaccaactcacc---atttttaccatgacataacttcacctaattttatttg 183  Q
    ||||||||||||||| ||| |||  |||| | |||| |||| |||||||| ||||  |||    |||||||||| | || |||||| || ||||||||||    
T  366694 taacttctcatgaaataaaagaatgtaaacccccatgcatttaatcaccatcaaccgacctttttttttaccatcaaatgacttcatctgattttatttg 366793  T
Q  184 gctttgttaccgaatcatagatgtggagagtcttgcacttatatggagagatgttaacatgtcttatatgagttaaagtttcagattggatgcaa 278  Q
    ||| ||||||  |||||  |||| | |||||||  ||| || | | ||||||||||| |||| |||||| |||||||||| ||||||| ||||||    
T  366794 gctatgttacaaaatcaccgatgcgaagagtctaacacgtaaaggaagagatgttaatatgtgttatattagttaaagttccagattgcatgcaa 366888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 8358337 - 8358294
Alignment:
Q  1 aaagcacacactcctcttttt-ccttatcatttctctcatgttc 43  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||    
T  8358337 aaagcacacactccttttttttccttatcatttctctcatgttc 8358294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 90 - 137
Target Start/End: Original strand, 40262467 - 40262514
Alignment:
Q  90 cttctcatgaaagaaaggaacataaatctccatccattaaatcaccac 137  Q
    ||||||||||||||||| |||||||| || ||||||| ||||||||||    
T  40262467 cttctcatgaaagaaagaaacataaacctacatccatgaaatcaccac 40262514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 152
Target Start/End: Original strand, 12158810 - 12158871
Alignment:
Q  91 ttctcatgaaagaaaggaacataaatctccatccattaaatcaccaccaactcaccattttt 152  Q
    ||||||||||| ||||| ||||||| |||| || || ||||||||| ||||||||| |||||    
T  12158810 ttctcatgaaataaaggtacataaacctccctctataaaatcaccatcaactcacctttttt 12158871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 15275010 - 15274969
Alignment:
Q  93 ctcatgaaagaaaggaacataaatctccatccattaaatcac 134  Q
    ||||||||||||| ||||||||| || |||||||||||||||    
T  15275010 ctcatgaaagaaatgaacataaaccttcatccattaaatcac 15274969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 15455379 - 15455338
Alignment:
Q  93 ctcatgaaagaaaggaacataaatctccatccattaaatcac 134  Q
    ||||||||||||| ||||||||| || |||||||||||||||    
T  15455379 ctcatgaaagaaatgaacataaaccttcatccattaaatcac 15455338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 43214659 - 43214618
Alignment:
Q  93 ctcatgaaagaaaggaacataaatctccatccattaaatcac 134  Q
    ||||||||||||| ||||||||| || |||||||||||||||    
T  43214659 ctcatgaaagaaatgaacataaaccttcatccattaaatcac 43214618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 85 - 355
Target Start/End: Complemental strand, 18289967 - 18289700
Alignment:
Q  85 cgtaacttctcatgaaagaaaggaacataaatctccatccattaaatcaccaccaactcaccatttttaccatgacataacttcacctaattttatttgg 184  Q
    ||||||||||||||||||||||||||||||| |||  |||||||||| ||||||||||||| |||||||||| || ||  |||||  |||||||||||||    
T  18289967 cgtaacttctcatgaaagaaaggaacataaacctcactccattaaataaccaccaactcactatttttaccaggatatgtcttcatttaattttatttgg 18289868  T
Q  185 ctttgttaccgaatcatagatgtggagagtcttgcacttatatggagagatgttaacatgtcttatatgagttaaagtttcagattggatgcaagagaat 284  Q
    |||||||||| ||||| ||||| | ||| |||  |||      |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||    
T  18289867 ctttgttaccaaatcacagatgcgaagaatctcacacagg---ggagagatgttaacatgtcttatatgagttaaagtttctgattggatgcaagaaaat 18289771  T
Q  285 acaatgacaaacatataagtgagatgacccataaatccattgcctttaggacttggatgaagatgtgatgt 355  Q
    | | ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  18289770 atactgacaaacatataagtgagatgacccataaatccaatgcctttaggatttggatgaagatgtgatgt 18289700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 18290048 - 18290005
Alignment:
Q  1 aaagcacacactcctctttttccttatcatttctctcatgttcaa 45  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||    
T  18290048 aaagcacacactcct-tttttccttatcatttctttcatgttcaa 18290005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 312
Target Start/End: Complemental strand, 9711297 - 9711233
Alignment:
Q  248 tatatgagttaaagtttcagattggatgcaagagaatacaatgacaaacatataagtgagatgac 312  Q
    |||||||||||||||| || ||| |||||||||| ||||  ||| |||||| ||||| |||||||    
T  9711297 tatatgagttaaagttccacattagatgcaagagtatacggtgagaaacatctaagtaagatgac 9711233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 9711442 - 9711402
Alignment:
Q  99 aaagaaaggaacataaatctccatccattaaatcaccacca 139  Q
    ||||||| ||||| |||||||| ||||||||||||||||||    
T  9711442 aaagaaaagaacaaaaatctccctccattaaatcaccacca 9711402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 85 - 355
Target Start/End: Original strand, 20780194 - 20780456
Alignment:
Q  85 cgtaacttctcatgaaagaaaggaacataaatctccatccattaaatcaccaccaactcaccatttttaccatgacataacttcacctaattttatttgg 184  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||| ||| ||||| ||||||||||||||    
T  20780194 cgtaacttctcatgaaagaaaggaacataaacctccatccgttaaatcaccac-aactcaccatttttaccatgatatatcttcatctaattttatttgg 20780292  T
Q  185 ctttgttaccgaatcatagatgtggagagtcttgcacttatatggagagatgttaacatgtcttatatgagttaaagtttcagattggatgcaagagaat 284  Q
    |||||||||| ||||| ||||||| |||||||  |||||| | ||||||||| ||| ||||||||||||||||||| ||||| |||||||||       |    
T  20780293 ctttgttaccaaatcacagatgtgaagagtctcacacttaaagggagagatgctaaaatgtcttatatgagttaaattttcaaattggatgc-------t 20780385  T
Q  285 acaatgacaaacatataagtgagatgacccataaatccattgcctttaggacttggatgaagatgtgatgt 355  Q
    | | ||| |||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||    
T  20780386 atattgaaaaacatataagtgacatgacccataaatccaatgcctttaggatttggatgaagatgtgatgt 20780456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 278
Target Start/End: Complemental strand, 30170521 - 30170327
Alignment:
Q  87 taacttctcatgaaagaaaggaacataaatctccatccattaaatcaccaccaactcaccattttt---accatgacataacttcacctaattttatttg 183  Q
    ||||||||||||||| ||| |||| |||| | |||| ||||||||||||| |||   ||| |||||   ||||| | || |||||| || ||||||||||    
T  30170521 taacttctcatgaaataaaagaacgtaaacccccatgcattaaatcaccatcaatcgacctttttttttaccatcaaatgacttcatctgattttatttg 30170422  T
Q  184 gctttgttaccgaatcatagatgtggagagtcttgcacttatatggagagatgttaacatgtcttatatgagttaaagtttcagattggatgcaa 278  Q
    ||| ||||||  |||||  |||| | |||||||  ||| || | | ||||||||||| |||| |||||| |||||||||| ||||||| ||||||    
T  30170421 gctatgttacaaaatcaccgatgcgaagagtctaacacgtaaaggaagagatgttaatatgtgttatattagttaaagttccagattgcatgcaa 30170327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 192
Target Start/End: Original strand, 39186925 - 39187029
Alignment:
Q  87 taacttctcatgaaagaaaggaacataaatctccatccattaaatcaccaccaactcaccatttttaccatgacataacttcacctaattttatttggct 186  Q
    ||||||||||||||   || ||||||||| || ||||||||||||||||| ||||   || ||||||| |||| || |||||| ||||||||||||||||    
T  39186925 taacttctcatgaacttaaagaacataaaccttcatccattaaatcaccatcaac-ggccttttttactatgaaatgacttcatctaattttatttggct 39187023  T
Q  187 ttgtta 192  Q
     |||||    
T  39187024 gtgtta 39187029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 20780112 - 20780154
Alignment:
Q  1 aaagcacacactcctctttttccttatcatttctctcatgttc 43  Q
    ||||||||||||||| |||||||||||||||| ||||||||||    
T  20780112 aaagcacacactcctttttttccttatcatttatctcatgttc 20780154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 6437433 - 6437495
Alignment:
Q  96 atgaaagaaaggaacataaatctccatccattaaatcaccaccaactcaccatttttaccatg 158  Q
    |||||||| |||| ||||||||||||||||| ||| ||| | ||||||||  |||||||||||    
T  6437433 atgaaagataggatcataaatctccatccatcaaaccactatcaactcacattttttaccatg 6437495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 317
Target Start/End: Complemental strand, 32970539 - 32970450
Alignment:
Q  228 ggagagatgttaacatgtcttatatgagttaaagtttcagattggatgcaagagaatacaatgacaaacatataagtgagatgacccata 317  Q
    ||||| ||||||| |||||  || ||||| ||||||||| ||| |||||||||| | |   ||| ||| |||||||||||||||||||||    
T  32970539 ggagatatgttaatatgtcaaatgtgagtgaaagtttcacattagatgcaagagtagatgctgaaaaatatataagtgagatgacccata 32970450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 37835669 - 37835613
Alignment:
Q  90 cttctcatgaaagaaaggaacataaatctccatccattaaatcaccaccaactcacc 146  Q
    ||||||||||||||||  |||||||||| || || ||||||| | ||||||||||||    
T  37835669 cttctcatgaaagaaaacaacataaatccccctctattaaattatcaccaactcacc 37835613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 50244364 - 50244416
Alignment:
Q  229 gagagatgttaacatgtcttatatgagttaaagtttcagattggatgcaagag 281  Q
    |||||| |||||  |||| ||| ||||||||||||||| ||||||||||||||    
T  50244364 gagagaagttaatttgtcgtatgtgagttaaagtttcatattggatgcaagag 50244416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 87 - 355
Target Start/End: Complemental strand, 29784 - 29516
Alignment:
Q  87 taacttctcatgaaagaaaggaacataaatctccatccattaaatcaccaccaactcaccatttttaccatgacataacttcacctaattttatttggct 186  Q
    ||||||||||||||||||||||||||||| || | |||||||||||||||||||| |||  | |||||||||| ||  ||||| ||||||||||| ||||    
T  29784 taacttctcatgaaagaaaggaacataaacctacctccattaaatcaccaccaacccactttctttaccatgatatgccttcatctaattttattcggct 29685  T
Q  187 ttgttaccgaatcatagatgtggagagtcttgcacttatatggagagatgttaacatgtcttatatgagttaaagtttcagattggatgcaagagaatac 286  Q
    |||||||| || || ||| | ||||||| |  |||||  | ||| ||||||||| ||||||||| ||||||||| ||||| ||| ||||||||||||||     
T  29684 ttgttaccaaaacacagaaggggagagtatcacacttgaagggaaagatgttaatatgtcttatttgagttaaactttcaaattagatgcaagagaatat 29585  T
Q  287 aatgacaaacatataagtgagatgacccataaatccattgcctttaggacttggatgaagatgtgatgt 355  Q
    | ||||||||||||||||||||||| ||| ||||||| ||||||||||| ||| |||||||||||||||    
T  29584 agtgacaaacatataagtgagatgatccaaaaatccaatgcctttaggatttgaatgaagatgtgatgt 29516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 29866 - 29824
Alignment:
Q  3 agcacacactcctctttttccttatcatttctctcatgttcaa 45  Q
    |||||||||||||  ||||||||||||||||||||||||||||    
T  29866 agcacacactccttattttccttatcatttctctcatgttcaa 29824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 121; Significance: 6e-62; HSPs: 4)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 87 - 355
Target Start/End: Complemental strand, 7040 - 6772
Alignment:
Q  87 taacttctcatgaaagaaaggaacataaatctccatccattaaatcaccaccaactcaccatttttaccatgacataacttcacctaattttatttggct 186  Q
    ||||||||||||||||||||||||||||| || | |||||||||||||||||||| |||  | |||||||||| ||  ||||| ||||||||||||||||    
T  7040 taacttctcatgaaagaaaggaacataaacctacctccattaaatcaccaccaacccactttctttaccatgatatgtcttcatctaattttatttggct 6941  T
Q  187 ttgttaccgaatcatagatgtggagagtcttgcacttatatggagagatgttaacatgtcttatatgagttaaagtttcagattggatgcaagagaatac 286  Q
    |||||||| |||||   | | ||||||| |  |||||| | ||| | ||||||| ||||||||||||||||||| ||||| ||| ||||||||||||||     
T  6940 ttgttaccaaatcacgaaaggggagagtatcacacttaaagggaaatatgttaatatgtcttatatgagttaaactttcaaattagatgcaagagaatat 6841  T
Q  287 aatgacaaacatataagtgagatgacccataaatccattgcctttaggacttggatgaagatgtgatgt 355  Q
    | | |||||||| |||||||||||| ||||||||||| ||| ||||||| ||| |||||||||||||||    
T  6840 agtaacaaacatgtaagtgagatgatccataaatccaatgcttttaggatttgaatgaagatgtgatgt 6772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 7126 - 7082
Alignment:
Q  1 aaagcacacactcctctttttccttatcatttctctcatgttcaa 45  Q
    |||||||||||||||  ||||||||||||||||||||||||||||    
T  7126 aaagcacacactccttattttccttatcatttctctcatgttcaa 7082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 281
Target Start/End: Complemental strand, 251 - 199
Alignment:
Q  229 gagagatgttaacatgtcttatatgagttaaagtttcagattggatgcaagag 281  Q
    |||||| |||||  |||| ||| ||||||||||||||| ||||||||||||||    
T  251 gagagaagttaatttgtcgtatgtgagttaaagtttcatattggatgcaagag 199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 281
Target Start/End: Complemental strand, 9066 - 9014
Alignment:
Q  229 gagagatgttaacatgtcttatatgagttaaagtttcagattggatgcaagag 281  Q
    |||||| |||||  |||| ||| ||||||||||||||| ||||||||||||||    
T  9066 gagagaagttaatttgtcgtatgtgagttaaagtttcatattggatgcaagag 9014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 87 - 355
Target Start/End: Original strand, 6560451 - 6560715
Alignment:
Q  87 taacttctcatgaaagaaaggaacataaatctccatccattaaatcaccaccaactcaccatttttaccatgacataacttcacctaattttatttggct 186  Q
    ||||||||||||||||||||||||||||| || | |||||||||||||||||||| |||  | |||||||||| ||  ||||| ||||||||||||||||    
T  6560451 taacttctcatgaaagaaaggaacataaacctacctccattaaatcaccaccaacccactttctttaccatgatatgtcttcatctaattttatttggct 6560550  T
Q  187 ttgttaccgaatcatagatgtggagagtcttgcacttatatggagagatgttaacatgtcttatatgagttaaagtttcagattggatgcaagagaatac 286  Q
    |||||||| ||||| ||| | ||||||| |  |||||| |     ||||||||| ||||||||||||||||||| ||||| ||  ||||||||||||||     
T  6560551 ttgttaccaaatcacagaaggggagagtatcacacttaaaa----agatgttaatatgtcttatatgagttaaactttcaaataagatgcaagagaatat 6560646  T
Q  287 aatgacaaacatataagtgagatgacccataaatccattgcctttaggacttggatgaagatgtgatgt 355  Q
    | |||||||||||||||||||||||  ||||||| || ||||||||||| ||| |||||||||||||||    
T  6560647 agtgacaaacatataagtgagatgattcataaatacaatgcctttaggatttgaatgaagatgtgatgt 6560715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 87 - 355
Target Start/End: Original strand, 317143 - 317411
Alignment:
Q  87 taacttctcatgaaagaaaggaacataaatctccatccattaaatcaccaccaactcaccatttttaccatgacataacttcacctaattttatttggct 186  Q
    |||||| |||||||||||||||||||||| || | |||||||||||||||| ||| |||  | |||||||||| ||  ||||| ||||||||||||||||    
T  317143 taacttttcatgaaagaaaggaacataaacctacctccattaaatcaccactaacccactttctttaccatgatatgtcttcatctaattttatttggct 317242  T
Q  187 ttgttaccgaatcatagatgtggagagtcttgcacttatatggagagatgttaacatgtcttatatgagttaaagtttcagattggatgcaagagaatac 286  Q
    |||||| | ||||| | | | ||||||| |  |||||| | ||| ||||||||| ||||||||||||||||| | ||||| ||| |||||||||||||||    
T  317243 ttgttatcaaatcacataaggggagagtatcacacttaaagggaaagatgttaatatgtcttatatgagttatactttcaaattagatgcaagagaatac 317342  T
Q  287 aatgacaaacatataagtgagatgacccataaatccattgcctttaggacttggatgaagatgtgatgt 355  Q
    | ||||||| ||||||||||||||| ||||||||||| ||||||||  | ||| |||||||||||||||    
T  317343 agtgacaaatatataagtgagatgatccataaatccaatgcctttaaaatttgaatgaagatgtgatgt 317411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 85 - 242
Target Start/End: Original strand, 13918857 - 13919014
Alignment:
Q  85 cgtaacttctcatgaaagaaaggaacataaatctccatccattaaatcaccaccaactcaccatttttaccatgacataacttcacctaattttatttgg 184  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||  ||||  ||||||||||||||    
T  13918857 cgtaacttctcatgaaagaaaggaacataaatctccctccattaaatcaccaccaactcaccatttttaccatgatatgtcttcgtctaattttatttgg 13918956  T
Q  185 ctttgttaccgaatcatagatgtggagagtcttgcacttatatggagagatgttaaca 242  Q
    |||||||||| ||||| | ||| |||||||||  |||||| | |||||||||||||||    
T  13918957 ctttgttaccaaatcaaaaatgcggagagtctcacacttaaaaggagagatgttaaca 13919014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 232 - 355
Target Start/End: Original strand, 36697430 - 36697553
Alignment:
Q  232 agatgttaacatgtcttatatgagttaaagtttcagattggatgcaagagaatacaatgacaaacatataagtgagatgacccataaatccattgccttt 331  Q
    ||||||||| ||||||||||||||||||| ||||| ||| |||||||||||||| | ||||||||||||||||||||||| || |||||||| |||||||    
T  36697430 agatgttaatatgtcttatatgagttaaactttcaaattagatgcaagagaatatagtgacaaacatataagtgagatgatccttaaatccaatgccttt 36697529  T
Q  332 aggacttggatgaagatgtgatgt 355  Q
    |||| ||| |||||||||||||||    
T  36697530 aggatttgaatgaagatgtgatgt 36697553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 296 - 355
Target Start/End: Original strand, 13919022 - 13919081
Alignment:
Q  296 catataagtgagatgacccataaatccattgcctttaggacttggatgaagatgtgatgt 355  Q
    |||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||    
T  13919022 catataagtgagatgacccataaatccaatgcctttaagatttggatgaagatgtgatgt 13919081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 358
Target Start/End: Original strand, 2041137 - 2041196
Alignment:
Q  299 ataagtgagatgacccataaatccattgcctttaggacttggatgaagatgtgatgtcca 358  Q
    |||||||||||||||| ||||||||||||||| |||  |||| |||||||||| ||||||    
T  2041137 ataagtgagatgacccgtaaatccattgccttaaggttttgggtgaagatgtggtgtcca 2041196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 137
Target Start/End: Complemental strand, 52541112 - 52541065
Alignment:
Q  90 cttctcatgaaagaaaggaacataaatctccatccattaaatcaccac 137  Q
    |||||||||||||||||||||||||| || ||||||| ||||||||||    
T  52541112 cttctcatgaaagaaaggaacataaacctacatccatgaaatcaccac 52541065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 317059 - 317103
Alignment:
Q  1 aaagcacacactcctctttttccttatcatttctctcatgttcaa 45  Q
    |||||||||||||||  ||||||||||||||| ||||||||||||    
T  317059 aaagcacacactccttattttccttatcatttatctcatgttcaa 317103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 6560367 - 6560411
Alignment:
Q  1 aaagcacacactcctctttttccttatcatttctctcatgttcaa 45  Q
    |||||||||||||||  |||| |||||||||||||||||||||||    
T  6560367 aaagcacacactccttatttttcttatcatttctctcatgttcaa 6560411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 97 - 140
Target Start/End: Original strand, 13232939 - 13232982
Alignment:
Q  97 tgaaagaaaggaacataaatctccatccattaaatcaccaccaa 140  Q
    ||||||||||||||||||||| || | |||||||||||||||||    
T  13232939 tgaaagaaaggaacataaatcccccttcattaaatcaccaccaa 13232982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 91 - 134
Target Start/End: Original strand, 13910092 - 13910135
Alignment:
Q  91 ttctcatgaaagaaaggaacataaatctccatccattaaatcac 134  Q
    ||||||||||||||| ||||||||| || |||||||||||||||    
T  13910092 ttctcatgaaagaaatgaacataaaccttcatccattaaatcac 13910135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 271
Target Start/End: Complemental strand, 4278727 - 4278685
Alignment:
Q  229 gagagatgttaacatgtcttatatgagttaaagtttcagattg 271  Q
    |||||||||||||||||| |||||||||| |||||||| ||||    
T  4278727 gagagatgttaacatgtcctatatgagttcaagtttcatattg 4278685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 13918776 - 13918818
Alignment:
Q  1 aaagcacacactcctctttttccttatcatttctctcatgttcaa 45  Q
    ||||||||||||| |  ||||||||||||||||||||||||||||    
T  13918776 aaagcacacactctt--ttttccttatcatttctctcatgttcaa 13918818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 6555308 - 6555360
Alignment:
Q  229 gagagatgttaacatgtcttatatgagttaaagtttcagattggatgcaagag 281  Q
    |||||| |||||  |||| ||| ||||||||||||||| ||||||||||||||    
T  6555308 gagagaagttaatttgtcgtatgtgagttaaagtttcatattggatgcaagag 6555360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 312
Target Start/End: Complemental strand, 13577564 - 13577500
Alignment:
Q  248 tatatgagttaaagtttcagattggatgcaagagaatacaatgacaaacatataagtgagatgac 312  Q
    |||||||||||||||| || ||| |||||||||| ||||  ||| |||||| ||||| |||||||    
T  13577564 tatatgagttaaagttccacattagatgcaagagtatacggtgagaaacatctaagtaagatgac 13577500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 13577709 - 13577669
Alignment:
Q  99 aaagaaaggaacataaatctccatccattaaatcaccacca 139  Q
    ||||||| ||||| |||||||| ||||||||||||||||||    
T  13577709 aaagaaaagaacaaaaatctccctccattaaatcaccacca 13577669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 85 - 355
Target Start/End: Original strand, 49948 - 50208
Alignment:
Q  85 cgtaacttctcatgaaagaaaggaacataaatctccatccattaaatcaccaccaactcaccatttttaccatgacataacttcacctaattttatttgg 184  Q
    |||||| ||||||||||||||  ||| |||| |||||||||||||||||||||||||| ||||||||||| |||| ||  ||||| ||| ||||||||||    
T  49948 cgtaacatctcatgaaagaaattaacgtaaacctccatccattaaatcaccaccaactgaccatttttacaatgatatgtcttcatctagttttatttgg 50047  T
Q  185 ctttgttaccgaatcatagatgtggagagtcttgcacttatatggagagatgttaacatgtcttatatgagttaaagtttcagattggatgcaagagaat 284  Q
    |||||||||| ||||| ||||||    |||||  ||| || | |||||||||||||||||||||||||       |||||||||||| |||||||| |||    
T  50048 ctttgttaccaaatcacagatgt---cagtctcacacctaaagggagagatgttaacatgtcttatat------tagtttcagattgaatgcaagaaaat 50138  T
Q  285 acaatgacaaacatataagtgagatgacccataaatccattgcctttaggacttggatgaagatgtgatgt 355  Q
    | | ||||||||||||||||||||||||| || |||| | || |||||||| ||||||||| |||||||||    
T  50139 atagtgacaaacatataagtgagatgacctat-aatctaatgtctttaggatttggatgaatatgtgatgt 50208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 85 - 355
Target Start/End: Complemental strand, 27437414 - 27437154
Alignment:
Q  85 cgtaacttctcatgaaagaaaggaacataaatctccatccattaaatcaccaccaactcaccatttttaccatgacataacttcacctaattttatttgg 184  Q
    |||||| ||||||||||||||  ||| |||| |||||||||||||||||||||||||| ||||||||||| |||| ||  ||||| ||| ||||||||||    
T  27437414 cgtaacatctcatgaaagaaattaacgtaaacctccatccattaaatcaccaccaactgaccatttttacaatgatatgtcttcatctagttttatttgg 27437315  T
Q  185 ctttgttaccgaatcatagatgtggagagtcttgcacttatatggagagatgttaacatgtcttatatgagttaaagtttcagattggatgcaagagaat 284  Q
    |||||||||| ||||| ||||||    |||||  ||| || | |||||||||||||||||||||||||       |||||||||||| |||||||| |||    
T  27437314 ctttgttaccaaatcacagatgt---cagtctcacacctaaagggagagatgttaacatgtcttatat------tagtttcagattgaatgcaagaaaat 27437224  T
Q  285 acaatgacaaacatataagtgagatgacccataaatccattgcctttaggacttggatgaagatgtgatgt 355  Q
    | | ||||||||||||||||||||||||| || |||| | || |||||||| ||||||||| |||||||||    
T  27437223 atagtgacaaacatataagtgagatgacctat-aatctaatgtctttaggatttggatgaatatgtgatgt 27437154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 89 - 242
Target Start/End: Original strand, 15879460 - 15879613
Alignment:
Q  89 acttctcatgaaagaaaggaacataaatctccatccattaaatcaccaccaactcaccatttttaccatgacataacttcacctaattttatttggcttt 188  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||| ||  |||||  |||||||||||||||||    
T  15879460 acttctcatgaaagaaaggaacataaacctccctccattaaatcaccaccaactcaccatttttaccgtgatatgtcttcatttaattttatttggcttt 15879559  T
Q  189 gttaccgaatcatagatgtggagagtcttgcacttatatggagagatgttaaca 242  Q
    |||||| ||||| | ||| |||||||||  |||||| | |||||||||||||||    
T  15879560 gttaccaaatcaaaaatgcggagagtctcacacttaaaaggagagatgttaaca 15879613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 148 - 278
Target Start/End: Original strand, 21988356 - 21988486
Alignment:
Q  148 tttttaccatgacataacttcacctaattttatttggctttgttaccgaatcatagatgtggagagtcttgcacttatatggagagatgttaacatgtct 247  Q
    |||||||||| | || |||||| || ||||||||||||| ||||||  |||||  |||| | |||||||  ||| || | | ||||||||||| |||| |    
T  21988356 tttttaccatcaaatgacttcatctgattttatttggctatgttacaaaatcaccgatgcgaagagtctaacacgtaaaggaagagatgttaatatgtgt 21988455  T
Q  248 tatatgagttaaagtttcagattggatgcaa 278  Q
    ||||| ||||||||||||| |||| ||||||    
T  21988456 tatattagttaaagtttcatattgcatgcaa 21988486  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 296 - 355
Target Start/End: Original strand, 15879621 - 15879680
Alignment:
Q  296 catataagtgagatgacccataaatccattgcctttaggacttggatgaagatgtgatgt 355  Q
    ||||||||||||| || |||||||| || |||||||| || |||||||||||||||||||    
T  15879621 catataagtgagaagaaccataaattcaatgcctttaagatttggatgaagatgtgatgt 15879680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 9450948 - 9450903
Alignment:
Q  91 ttctcatgaaagaaaggaacataaatctccatccattaaatcacca 136  Q
    ||||||||||||||||||||| ||| |||||||||| ||| |||||    
T  9450948 ttctcatgaaagaaaggaacaaaaacctccatccatgaaaccacca 9450903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 15879374 - 15879416
Alignment:
Q  1 aaagcacacactcctctttttccttatcatttctctcatgttcaa 45  Q
    ||||||||||||| |  ||||||||||||||||||||||||||||    
T  15879374 aaagcacacactctt--ttttccttatcatttctctcatgttcaa 15879416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 87 - 278
Target Start/End: Original strand, 15524187 - 15524380
Alignment:
Q  87 taacttctcatgaaagaaaggaacataaatctccatccattaaatcaccaccaactcaccattttt--accatgacataacttcacctaattttatttgg 184  Q
    ||||||||||||||| ||| |||| |||| | |||| ||||||||||||| ||||  ||| |||||  ||||| | || |||||| || |||||||||||    
T  15524187 taacttctcatgaaataaaagaacgtaaacccccatgcattaaatcaccatcaaccgaccttttttttaccatcaaatgacttcatctgattttatttgg 15524286  T
Q  185 ctttgttaccgaatcatagatgtggagagtcttgcacttatatggagagatgttaacatgtcttatatgagttaaagtttcagattggatgcaa 278  Q
    || ||||||  |||||  |||| |||||||||  ||| || ||| ||||||||||| |||| |||||| |||||||||| ||||||| ||||||    
T  15524287 ctatgttacaaaatcaccgatgcggagagtctaacacgtaaatgaagagatgttaatatgtgttatattagttaaagttccagattgcatgcaa 15524380  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 87 - 278
Target Start/End: Original strand, 22541372 - 22541565
Alignment:
Q  87 taacttctcatgaaagaaaggaacataaatctccatccattaaatcaccaccaactcaccattttt--accatgacataacttcacctaattttatttgg 184  Q
    ||||||||||||||| ||| |||| |||| | |||| ||||||||||||| ||||  ||| |||||  ||||| | || |||||| || |||||||||||    
T  22541372 taacttctcatgaaataaaagaacgtaaacccccatgcattaaatcaccatcaaccgaccttttttttaccatcaaatgacttcatctgattttatttgg 22541471  T
Q  185 ctttgttaccgaatcatagatgtggagagtcttgcacttatatggagagatgttaacatgtcttatatgagttaaagtttcagattggatgcaa 278  Q
    || ||||||  |||||  |||| |||||||||  ||| || | | ||||||||||| |||| |||||| |||||||||| ||||||| ||||||    
T  22541472 ctatgttacaaaatcaccgatgcggagagtctaacacgtaaaggaagagatgttaatatgtgttatattagttaaagttccagattgcatgcaa 22541565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 87 - 278
Target Start/End: Complemental strand, 19100783 - 19100590
Alignment:
Q  87 taacttctcatgaaagaaaggaacataaatctccatccattaaatcaccaccaactcacc--atttttaccatgacataacttcacctaattttatttgg 184  Q
    ||||||||||||||| ||| |||| |||| | |||| ||||||||||||| ||||  |||   |||||||||| | || |||||| || |||||||||||    
T  19100783 taacttctcatgaaataaaagaacgtaaacccccatgcattaaatcaccatcaaccaaccttttttttaccatcaaatgacttcatctgattttatttgg 19100684  T
Q  185 ctttgttaccgaatcatagatgtggagagtcttgcacttatatggagagatgttaacatgtcttatatgagttaaagtttcagattggatgcaa 278  Q
    || ||||||  |||||  |||| | |||||||  ||| || | | ||||||||||| |||| |||||| |||||||||| | ||||| ||||||    
T  19100683 ctatgttacaaaatcaccgatgcgaagagtctaacacgtaaaggaagagatgttaatatgtgttatattagttaaagttccggattgcatgcaa 19100590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 49883272 - 49883316
Alignment:
Q  1 aaagcacacactcctctttttccttatcatttctctcatgttcaa 45  Q
    |||||||||||||||  | ||||||||||||||||||||||||||    
T  49883272 aaagcacacactccttatcttccttatcatttctctcatgttcaa 49883316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 90 - 137
Target Start/End: Complemental strand, 3836237 - 3836190
Alignment:
Q  90 cttctcatgaaagaaaggaacataaatctccatccattaaatcaccac 137  Q
    ||||||||||||||||||||||| || || ||||||| ||||||||||    
T  3836237 cttctcatgaaagaaaggaacatcaacctacatccatgaaatcaccac 3836190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 141
Target Start/End: Complemental strand, 43385342 - 43385292
Alignment:
Q  91 ttctcatgaaagaaaggaacataaatctccatccattaaatcaccaccaac 141  Q
    ||||||||||||||| |||||||||| ||  | ||||||||||||||||||    
T  43385342 ttctcatgaaagaaatgaacataaatatctcttcattaaatcaccaccaac 43385292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 16669 - 16729
Alignment:
Q  91 ttctcatgaaagaaaggaacataaatctccatccattaaatcaccaccaactcaccatttt 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  16669 ttctcatgaaagaaaggaacataaatctccatccattaaatcaccaccaacccaccttttt 16729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 87 - 278
Target Start/End: Complemental strand, 30325049 - 30324854
Alignment:
Q  87 taacttctcatgaaagaaaggaacataaatctccatccattaaatcaccaccaactcacc----atttttaccatgacataacttcacctaattttattt 182  Q
    ||||||||||||||| ||| |||| |||||| ||||  |||||||||||| |||| ||||     |||||||||| | || |||||| || |||||||||    
T  30325049 taacttctcatgaaataaaagaacgtaaatccccatgtattaaatcaccatcaacccaccttttttttttaccatcaaatgacttcatctgattttattt 30324950  T
Q  183 ggctttgttaccgaatcatagatgtggagagtcttgcacttatatggagagatgttaacatgtcttatatgagttaaagtttcagattggatgcaa 278  Q
    |||| | ||||  |||||  |||| | |||||||  ||| || | | ||||||||||| |||| |||||| |||||||||| ||||||| ||||||    
T  30324949 ggctatattacaaaatcaccgatgcgaagagtctaacacgtaaaggaagagatgttaatatgtgttatattagttaaagttccagattgcatgcaa 30324854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 19319124 - 19319059
Alignment:
Q  92 tctcatgaaagaaaggaacataaatctccatccattaaatcaccaccaactcaccatttttaccat 157  Q
    ||||||||||||||| |||||||| |||  ||| | |||||||||| |||||||| ||||||||||    
T  19319124 tctcatgaaagaaagaaacataaacctctctccgtaaaatcaccactaactcaccttttttaccat 19319059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 141
Target Start/End: Complemental strand, 11769982 - 11769935
Alignment:
Q  94 tcatgaaagaaaggaacataaatctccatccattaaatcaccaccaac 141  Q
    |||||||||||||||||||||||| || ||||| |||||| |||||||    
T  11769982 tcatgaaagaaaggaacataaatcaccctccataaaatcatcaccaac 11769935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 137
Target Start/End: Complemental strand, 7743911 - 7743865
Alignment:
Q  91 ttctcatgaaagaaaggaacataaatctccatccattaaatcaccac 137  Q
    |||| |||||||||||||||||||| |||| ||||| ||||||||||    
T  7743911 ttcttatgaaagaaaggaacataaacctccctccatgaaatcaccac 7743865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 9025725 - 9025777
Alignment:
Q  229 gagagatgttaacatgtcttatatgagttaaagtttcagattggatgcaagag 281  Q
    |||||| |||||  |||| ||| ||||||||||||||| ||||||||||||||    
T  9025725 gagagaagttaatttgtcgtatgtgagttaaagtttcatattggatgcaagag 9025777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 31963480 - 31963436
Alignment:
Q  1 aaagcacacactcctctttttccttatcatttctctcatgttcaa 45  Q
    |||||||||||||||  ||||||||||||||||||||||||||||    
T  31963480 aaagcacacactccttattttccttatcatttctctcatgttcaa 31963436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 144
Target Start/End: Complemental strand, 36727137 - 36727083
Alignment:
Q  90 cttctcatgaaagaaaggaacataaatctccatccattaaatcaccaccaactca 144  Q
    |||||||||||||||| ||||||||| |||  |||||||||| ||||||||||||    
T  36727137 cttctcatgaaagaaatgaacataaaactcgctccattaaattaccaccaactca 36727083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 6910224 - 6910268
Alignment:
Q  90 cttctcatgaaagaaaggaacataaatctccatccattaaatcac 134  Q
    ||||||||| ||||||||||||||||||||| ||||| |||||||    
T  6910224 cttctcatggaagaaaggaacataaatctccgtccatcaaatcac 6910268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 91 - 134
Target Start/End: Complemental strand, 45053856 - 45053813
Alignment:
Q  91 ttctcatgaaagaaaggaacataaatctccatccattaaatcac 134  Q
    ||||||||||||||| ||||||||| || |||||||||||||||    
T  45053856 ttctcatgaaagaaatgaacataaaccttcatccattaaatcac 45053813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 141
Target Start/End: Complemental strand, 31963395 - 31963341
Alignment:
Q  87 taacttctcatgaaagaaaggaacataaatctccatccattaaatcaccaccaac 141  Q
    |||||||||| |||||||| ||||| ||| || | ||||||||||||||||||||    
T  31963395 taacttctcacgaaagaaatgaacaaaaacctacctccattaaatcaccaccaac 31963341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 281
Target Start/End: Complemental strand, 39403493 - 39403464
Alignment:
Q  252 tgagttaaagtttcagattggatgcaagag 281  Q
    ||||||||||||||||||||||||||||||    
T  39403493 tgagttaaagtttcagattggatgcaagag 39403464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 281
Target Start/End: Complemental strand, 16464 - 16412
Alignment:
Q  229 gagagatgttaacatgtcttatatgagttaaagtttcagattggatgcaagag 281  Q
    |||||| |||||  |||| ||| ||||||||||||||| ||||||||||||||    
T  16464 gagagaagttaatttgtcgtatgtgagttaaagtttcatattggatgcaagag 16412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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