View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6978_low_31 (Length: 331)
Name: NF6978_low_31
Description: NF6978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6978_low_31 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-169; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 21706302 - 21705988
Alignment:
| Q |
1 |
cagttttaggggcaagttctgaaaatgaaaaaggttgatgaaattataaagcatatttgggaaattaaataaattatgcttctgcaaaatagaacatact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21706302 |
cagttttaggggcaagttctgaaaatgaaaaaggttgatgaaattataaagcatatttgggaaattaaataaattatgcttctgcaaaatagaacatact |
21706203 |
T |
|
| Q |
101 |
tcattttgactatgatcagagcgtatcatcacaaagatccatgacaaagccaatttgggacaatccttcacaacaagagcctttaaagagtgagatggcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
21706202 |
tcattttgactatgatcagagcgtatcatcacaaagatccatgacaaagccaatttgggacaatcgttcacaacaagagcctttaaagagtgagatggcc |
21706103 |
T |
|
| Q |
201 |
actttgcaagacagtattcgggacatatcccaataaaattgtgaaggaattcgagattgagtactttcagttgaggaagcatgatgtggttgtggtattt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21706102 |
actttgcaagacagtattcgggacatatcccaat-aaattgtgaaggaattcgagattgagtactttcagttgaggaagcatgatgtggttgtggtattt |
21706004 |
T |
|
| Q |
301 |
gtgacaagaatgatgt |
316 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
21706003 |
gtgagaagaatgatgt |
21705988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 107 - 316
Target Start/End: Original strand, 21713334 - 21713543
Alignment:
| Q |
107 |
tgactatgatcagagcgtatcatcacaaagatccatgacaaagccaatttgggacaatccttcacaacaagagcctttaaagagtgagatggccactttg |
206 |
Q |
| |
|
||||||||| |||| || ||||| | | |||||| |||| | |||||||||||||||||| |||||||||| || | |||||||||||||||||||| | |
|
|
| T |
21713334 |
tgactatgaccagaacgaatcataagagcgatccacgacatatccaatttgggacaatcctccacaacaagatccctcaaagagtgagatggccacttcg |
21713433 |
T |
|
| Q |
207 |
caagacagtattcgggacatatcccaataaaattgtgaag-gaattcgagattgagtactttcagttgaggaagcatgatgtggttgtggtatttgtgac |
305 |
Q |
| |
|
|| |||||||||| ||||| |||||||| | ||||| ||| ||| | ||| ||||| |||| |||||||| ||||||| ||||||| |||||| |||| |
|
|
| T |
21713434 |
catgacagtattcaggacacatcccaatgagattgtcaagagaact-gagtttgagaacttccagttgagaaagcatggtgtggttcaggtattggtgag |
21713532 |
T |
|
| Q |
306 |
aagaatgatgt |
316 |
Q |
| |
|
| ||||||||| |
|
|
| T |
21713533 |
atgaatgatgt |
21713543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 21709144 - 21709088
Alignment:
| Q |
106 |
ttgactatgatcagagcgtatcatcacaaagatccatgacaaagccaatttgggaca |
162 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||| |||||| || ||||| |
|
|
| T |
21709144 |
ttgactatgatcagagcgtatcatcacagcgatccataacatagccaactttggaca |
21709088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University