View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6978_low_32 (Length: 331)
Name: NF6978_low_32
Description: NF6978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6978_low_32 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 43317545 - 43317221
Alignment:
| Q |
1 |
atcttgtgtatatcttttttcaatttcaatctcttcaagatttcctaactttttggagagaaaatctgcatgattttggttctatccttttcctatacta |
100 |
Q |
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| T |
43317545 |
atcttgtgtatatcttttttcaatttcaatctcttcaagatttcctaactttttggagagaaaatctgcatgattttcgttctatccttttcctatacta |
43317446 |
T |
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| Q |
101 |
ctttctttctccttttaactaggatttgtttttgatcgatctggttcataaaacactttaaatacatcaaaatcaccataattatagacgagagatatac |
200 |
Q |
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||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
43317445 |
ctttctttctccttttaactaggatttgttttttctctatctgtttcataaaacactttaaatacattaaaatcaccataattatagatgagagatatac |
43317346 |
T |
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| Q |
201 |
acaaaattattgtaacctgtgtgttacatttatctaatcatggtcgcagttcacaccctttgatccatatctttccttaatatcaatctctttgagattt |
300 |
Q |
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|||||||||||||||| ||| ||||||||||| |||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
43317345 |
acaaaattattgtaacttgtatgttacatttacctaatcatagtcgcagttcacacccttttatccatatctttccctaatatcaatctctttgagat-- |
43317248 |
T |
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| Q |
301 |
ccatttcctatctttatagagtaaaaatctt |
331 |
Q |
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|||||| |||||||||||||||||||| |
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| T |
43317247 |
----ttcctacctttatagagtaaaaatctt |
43317221 |
T |
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