View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6978_low_38 (Length: 309)
Name: NF6978_low_38
Description: NF6978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6978_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 3 - 300
Target Start/End: Original strand, 12953563 - 12953860
Alignment:
| Q |
3 |
cacacaaataggacaaagcaaatccacttttgtggcaaattaaaagttgtttctatttctagcttacattgtaagatggaccagacagtaccttatataa |
102 |
Q |
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| T |
12953563 |
cacacaaataggacaaagcaaatccacttttgtggcaaattaaaagttgtttctatttctagcttacattgtaagatggaccagacagtatcttatataa |
12953662 |
T |
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| Q |
103 |
aaatggcagattaagggatcaaagggaaagatacacggacttgtaatctaaccaacgtgtttttgagtgtatgcatgccttgtaaatctgatcagaagca |
202 |
Q |
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| T |
12953663 |
aaatggcagattaagggatcaaagggaaagatacacggacttgtaatctaaccaatgtgtttttgagtgtatgcatgccttgtaaatctgatcagaagca |
12953762 |
T |
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| Q |
203 |
tgaagcttgagtaattatagccagccaattttcactgaattgtaccaactgttaaaacactttttactgtgtcataaatgccaagctcacccaacacc |
300 |
Q |
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| T |
12953763 |
tgaagcttgaataattatagccagccaattttcactgaattgtaccaactgtaaaaacactttttactgtgtcataaatgccaagctcacccaacacc |
12953860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 4 - 122
Target Start/End: Complemental strand, 12925511 - 12925393
Alignment:
| Q |
4 |
acacaaataggacaaagcaaatccacttttgtggcaaattaaaagttgtttctatttctagcttacattgtaagatggaccagacagtaccttatataaa |
103 |
Q |
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||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
12925511 |
acacaaataggacaaagcatatccagttttgtggcaaattaaaagttgtttctatttctagcttacattgtaagatggaccagacaatatcttatataaa |
12925412 |
T |
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| Q |
104 |
aatggcagattaagggatc |
122 |
Q |
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| T |
12925411 |
aatggaagattaagggatc |
12925393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 12950814 - 12950882
Alignment:
| Q |
8 |
aaataggacaaagcaaatccacttttgtggcaaattaaaagttgtttctatttctagcttacattgtaa |
76 |
Q |
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| T |
12950814 |
aaataggacaaagcaaagccacttttgtggcaaattaaaagttgtttctatttctagcttacattgtaa |
12950882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 24508058 - 24508126
Alignment:
| Q |
6 |
acaaataggacaaagcaaatccacttttgtggcaaattaaaagttgtttctatttctagcttacattgt |
74 |
Q |
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| T |
24508058 |
acaaataggacaaagcaaagccacttttgtgccaaattaaaagttgcttctatttctagcttacattgt |
24508126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 12917701 - 12917645
Alignment:
| Q |
18 |
aagcaaatccacttttgtggcaaattaaaagttgtttctatttctagcttacattgt |
74 |
Q |
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| T |
12917701 |
aagcaaatccacttttgtggcaaattaaaagttgtttctatttcaagcttacattgt |
12917645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 12925395 - 12925335
Alignment:
| Q |
148 |
atctaaccaacgtgtttttgagtgtatgcatgccttgtaaatctgatcagaagcatgaagc |
208 |
Q |
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| T |
12925395 |
atctaaccaatgtgtttttgagtgtatggatgccttgtaaatctgatcagaagcatgaagc |
12925335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 12939688 - 12939744
Alignment:
| Q |
18 |
aagcaaatccacttttgtggcaaattaaaagttgtttctatttctagcttacattgt |
74 |
Q |
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| T |
12939688 |
aagcaaatccacttttgtggcaaattaaaagttgtttctatttcaagcttacattgt |
12939744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 303
Target Start/End: Complemental strand, 12925330 - 12925259
Alignment:
| Q |
232 |
tttcactgaattgtaccaactgttaaaacactttttactgtgtcataaatgccaagctc-acccaacaccaaa |
303 |
Q |
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| T |
12925330 |
tttcactgaattgtacttactgccaaa-cactttttattgtgtcataaatgccaagttcaatccaacaccaaa |
12925259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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