View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6978_low_39 (Length: 307)
Name: NF6978_low_39
Description: NF6978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6978_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 6 - 255
Target Start/End: Complemental strand, 8360955 - 8360707
Alignment:
| Q |
6 |
tggacatcatcatcactatttcgttttgagcctttaatttattttcttcttgttcaatgtctagttgctcaaaattgttttacgaaaagtaagtaacatt |
105 |
Q |
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| T |
8360955 |
tggacttcatcatcactatttcgttttgagcctttcatttattt-cttcttgttcaatgtctagttgctcaaaattgttttacgaaaagtacgtaacatt |
8360857 |
T |
|
| Q |
106 |
caattcatatatgttgacctaattttttacttttgccttgtgtaatctcttgactgcctgcttgacagaaacaaaaagcaaacaatacttcagatagttt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
8360856 |
caattcatatatgttgacctaattttttacttttgccttgtgtaatctcttggctggctgcttgacagaaacaaaaagcaaacaatactttagatagttt |
8360757 |
T |
|
| Q |
206 |
atttttattaatcccatttagataataaaaatcgattcccatgaagaatt |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8360756 |
atttttattaatcccatttagataataaaaatcgattcccatgaagaatt |
8360707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 6 - 255
Target Start/End: Complemental strand, 38412624 - 38412375
Alignment:
| Q |
6 |
tggacatcatcatcactatttcgttttgagcctttaatttattttcttcttgttcaatgtctagttgctcaaaattgttttacgaaaagtaagtaacatt |
105 |
Q |
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||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38412624 |
tggacttcatcatcactatttcgttttgagcctttcatttattttcttcttgttcaatgtctagttgctcaaaattgttttacgaaaagtacataacatt |
38412525 |
T |
|
| Q |
106 |
caattcatatatgttgacctaattttttacttttgccttgtgtaatctcttgactgcctgcttgacagaaacaaaaagcaaacaatacttcagatagttt |
205 |
Q |
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| T |
38412524 |
caattcatatatgttggcttaattttttacttttgccttgtgtaatctcttggctggctgcttgacagaaacaaaaagcaaacaatacttcagatatttt |
38412425 |
T |
|
| Q |
206 |
atttttattaatcccatttagataataaaaatcgattcccatgaagaatt |
255 |
Q |
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| T |
38412424 |
atttttattaatcccatttagataataaaaatcgattcccatgaagaatt |
38412375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 6 - 255
Target Start/End: Original strand, 34612022 - 34612271
Alignment:
| Q |
6 |
tggacatcatcatcactatttcgttttgagcctttaatttattttcttcttgttcaatgtctagttgctcaaaattgttttacgaaaagtaagtaacatt |
105 |
Q |
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||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34612022 |
tggacttcatcatcactatttcgttttgagcctttcatttattttcttcttgttcaatgtctagttgctcaaaattgttttacgaaaagtacataacatt |
34612121 |
T |
|
| Q |
106 |
caattcatatatgttgacctaattttttacttttgccttgtgtaatctcttgactgcctgcttgacagaaacaaaaagcaaacaatacttcagatagttt |
205 |
Q |
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|||||||||||||||| | ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34612122 |
caattcatatatgttggcttaattttttacttttgccttgtgtaatctcttggctggctgcttgacagaaacaaaaagcaaacaatacttcagatatttt |
34612221 |
T |
|
| Q |
206 |
atttttattaatcccatttagataataaaaatcgattcccatgaagaatt |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34612222 |
atttttattaatcccatttagataataaaaatcgattcccatgaagaatt |
34612271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 6 - 255
Target Start/End: Complemental strand, 26908941 - 26908692
Alignment:
| Q |
6 |
tggacatcatcatcactatttcgttttgagcctttaatttattttcttcttgttcaatgtctagttgctcaaaattgttttacgaaaagtaagtaacatt |
105 |
Q |
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||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26908941 |
tggacttcatcatcactatttcgttttgagcctttcatttattttcttcttgttcaatgtctagttgctcaaaattgttttacgaaaagtacataacatt |
26908842 |
T |
|
| Q |
106 |
caattcatatatgttgacctaattttttacttttgccttgtgtaatctcttgactgcctgcttgacagaaacaaaaagcaaacaatacttcagatagttt |
205 |
Q |
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|||||||||||||||| | |||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26908841 |
caattcatatatgttggcttaattttttactattgccttgtgtaatctcttggctggctgcttgacagaaacaaaaagcaaacaatacttcagatatttt |
26908742 |
T |
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| Q |
206 |
atttttattaatcccatttagataataaaaatcgattcccatgaagaatt |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26908741 |
atttttattaatcccatttagataataaaaatcgattcccatgaagaatt |
26908692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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