View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6978_low_4 (Length: 835)
Name: NF6978_low_4
Description: NF6978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6978_low_4 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 768; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 768; E-Value: 0
Query Start/End: Original strand, 10 - 816
Target Start/End: Original strand, 2874758 - 2875562
Alignment:
| Q |
10 |
gagatgaaccatataggtttgtaacagttactcaatttgcagaggcattcaagtcgttccatgttgggaagacgatcaaagaagagcttgaaattccatt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2874758 |
gagatgaaccatataggtttgtaacagttactcaatttgcagaggcattcaagtcgttccatgttgggaagacgatcaaagaagagcttgaaattccatt |
2874857 |
T |
|
| Q |
110 |
tgacaagtcaaataatcatccagcagcattaacaactaaaaagtatggtgttaacaagaaggaactattaaaggctaacatctcaagagagtttttgctt |
209 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2874858 |
tgacaagtcaaataatcatccagcagcattaacaactaaaaagtatggtgttaacaagaaggaactattaaaggctaacatctcaagagagtttttgctt |
2874957 |
T |
|
| Q |
210 |
atgaaaagaaattcattcatttacctctttaagatggttcaagtgagttctagctttatttctataatatctgctttttgtttaacatgcatgcatggtt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2874958 |
atgaaaagaaattcattcatttacctctttaagatggttcaagtgagttctagctttatttctataatatctactttttgtttaacatgcatgcatggtt |
2875057 |
T |
|
| Q |
310 |
tcaacttttttattttcttctctctctctatgatatttaggtttctataatggcaacaattactatgacactttttctgcgaacccatatgcacaaagaa |
409 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2875058 |
tcaactttttcattttcttctc--tctctatgatatttaggtttctataatggcaacaattactatgacactttttctgcgaacccatatgcacaaagaa |
2875155 |
T |
|
| Q |
410 |
acagtgattgatggacaaattcattttggtgctttatatttctcattgataatgctcatgtttaacggaactattgagcttacaatgacaattgtgaaac |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
2875156 |
acagtgattgatggacaaattcattttggtgctttatatttctcattgataatgctcatgtttaatggaactattgagcttacaatgacaattgtgaaac |
2875255 |
T |
|
| Q |
510 |
ttccaacattctttaagcaaagagaccacttattttatccttcatgggcttatgctattccctcatggattgtaagagcccctgttacacttgtagatgc |
609 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2875256 |
ttcctacattctttaagcaaagagaccacttattttatccttcatgggcttatgctattccctcatggattgtaagagcccctgttacacttgtagatgc |
2875355 |
T |
|
| Q |
610 |
ttctatttgggtattcctcacttactatgtaattggatttgatccaaatatttggaggtaaataagcttctattatctgttttgcaacagttaatgtgta |
709 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
2875356 |
ttctatttgggtattcctcacttactatgtaattggatttgatccaaatatttggaggtaaataagcttctattatctgttttgcaacaattaatgtgta |
2875455 |
T |
|
| Q |
710 |
tactatgcttgattgtattgtgttatttatggtgtgattgatgactattaatttatgcagatttcttaagatgtatcttctactaatactgttaaaccag |
809 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2875456 |
tattatgcttgattgtattgtattatttatggtgtgattgatgactattaatttatgcagatttcttaagatgtatcttctactaatactgttaaaccag |
2875555 |
T |
|
| Q |
810 |
acagctt |
816 |
Q |
| |
|
||||||| |
|
|
| T |
2875556 |
acagctt |
2875562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 2884632 - 2884860
Alignment:
| Q |
16 |
aaccatataggtttgtaacagttactcaatttgcagaggcattcaagtcgttccatgttgggaagacgatcaaagaagagcttgaaattccatttgacaa |
115 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||| |||||||| | || | ||||||||| | || | ||| ||||||| ||||||||||||||| |
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|
| T |
2884632 |
aaccatacaggtttgtaactgttactcaatttgctgaggcatttcaatcataccatgttggaaggaaaacaggagatgagcttgcaattccatttgacaa |
2884731 |
T |
|
| Q |
116 |
gtcaaataatcatccagcagcattaacaactaaaaagtatggtgttaacaagaaggaactattaaaggctaacatctcaagagagtttttgcttatgaaa |
215 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||| |||||||||||| ||||||||||||| |
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|
| T |
2884732 |
gtctaagaatcatccagcagcattaacaactaaaaagtacggtgttaacaagaaagaactgttaaaggctaacttctcaagagagtatttgcttatgaaa |
2884831 |
T |
|
| Q |
216 |
agaaattcattcatttacctctttaagat |
244 |
Q |
| |
|
|||||||| || ||||| |||| ||||| |
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|
| T |
2884832 |
agaaattcctttgtttacatcttcaagat |
2884860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 2899928 - 2899700
Alignment:
| Q |
16 |
aaccatataggtttgtaacagttactcaatttgcagaggcattcaagtcgttccatgttgggaagacgatcaaagaagagcttgaaattccatttgacaa |
115 |
Q |
| |
|
||||||| |||||| |||| |||||||||||||| |||||||| | || | ||||||||| | || | | ||| ||||||| ||||||||||||||| |
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|
| T |
2899928 |
aaccatacaggtttttaactgttactcaatttgctgaggcatttcaatcataccatgttggaaggaaaacaagagatgagcttgcaattccatttgacaa |
2899829 |
T |
|
| Q |
116 |
gtcaaataatcatccagcagcattaacaactaaaaagtatggtgttaacaagaaggaactattaaaggctaacatctcaagagagtttttgcttatgaaa |
215 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||| |||||||||| | ||||||||||||| |
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|
| T |
2899828 |
gtctaagaatcatccagcagcattaacaactaaaaagtacggtgttaacaagaaagaactgttaaaggctaacttctcaagagaatatttgcttatgaaa |
2899729 |
T |
|
| Q |
216 |
agaaattcattcatttacctctttaagat |
244 |
Q |
| |
|
|| ||||| || ||||| |||| ||||| |
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|
| T |
2899728 |
aggaattcctttgtttacatcttcaagat |
2899700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 105 - 223
Target Start/End: Complemental strand, 44236023 - 44235905
Alignment:
| Q |
105 |
ccatttgacaagtcaaataatcatccagcagcattaacaactaaaaagtatggtgttaacaagaaggaactattaaaggctaacatctcaagagagtttt |
204 |
Q |
| |
|
|||||||||||| | || | |||||||| || || || || ||| |||||||| | ||||||| ||| || |||||||||||| |||||||||||| || |
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|
| T |
44236023 |
ccatttgacaagacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaagagagtatt |
44235924 |
T |
|
| Q |
205 |
tgcttatgaaaagaaattc |
223 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
44235923 |
tgctcatgaaaagaaattc |
44235905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 223
Target Start/End: Complemental strand, 44213048 - 44212930
Alignment:
| Q |
105 |
ccatttgacaagtcaaataatcatccagcagcattaacaactaaaaagtatggtgttaacaagaaggaactattaaaggctaacatctcaagagagtttt |
204 |
Q |
| |
|
|||||||||||| | || | |||||||| || || || || ||| |||||||| | ||||||| ||| || |||||||||||| |||||||||||| || |
|
|
| T |
44213048 |
ccatttgacaagacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaagagagtatt |
44212949 |
T |
|
| Q |
205 |
tgcttatgaaaagaaattc |
223 |
Q |
| |
|
|||| |||||||| ||||| |
|
|
| T |
44212948 |
tgctcatgaaaaggaattc |
44212930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 223
Target Start/End: Complemental strand, 44225209 - 44225091
Alignment:
| Q |
105 |
ccatttgacaagtcaaataatcatccagcagcattaacaactaaaaagtatggtgttaacaagaaggaactattaaaggctaacatctcaagagagtttt |
204 |
Q |
| |
|
|||||||||||| | || | |||||||| || || || || ||| |||||||| | ||||||| ||| || |||||||||||| |||||||||||| || |
|
|
| T |
44225209 |
ccatttgacaagacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaagagagtatt |
44225110 |
T |
|
| Q |
205 |
tgcttatgaaaagaaattc |
223 |
Q |
| |
|
|||| |||||||| ||||| |
|
|
| T |
44225109 |
tgctcatgaaaaggaattc |
44225091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000008; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 615 - 670
Target Start/End: Complemental strand, 39540036 - 39539981
Alignment:
| Q |
615 |
tttgggtattcctcacttactatgtaattggatttgatccaaatatttggaggtaa |
670 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||| ||||| | |||||| |
|
|
| T |
39540036 |
tttgggtattcctcacttactatgtcattggttttgatccatatattggaaggtaa |
39539981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 615 - 670
Target Start/End: Original strand, 39336090 - 39336145
Alignment:
| Q |
615 |
tttgggtattcctcacttactatgtaattggatttgatccaaatatttggaggtaa |
670 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| ||||||||| ||||| | |||||| |
|
|
| T |
39336090 |
tttgggtatttctcacttactatgtcattggttttgatccatatattggaaggtaa |
39336145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 615 - 670
Target Start/End: Original strand, 39347355 - 39347410
Alignment:
| Q |
615 |
tttgggtattcctcacttactatgtaattggatttgatccaaatatttggaggtaa |
670 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| ||||||||| ||||| | |||||| |
|
|
| T |
39347355 |
tttgggtatttctcacttactatgtcattggttttgatccatatattggaaggtaa |
39347410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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