View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6978_low_42 (Length: 297)

Name: NF6978_low_42
Description: NF6978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6978_low_42
NF6978_low_42
[»] chr5 (6 HSPs)
chr5 (16-281)||(38965566-38965831)
chr5 (16-278)||(25761158-25761420)
chr5 (16-278)||(13850771-13851034)
chr5 (16-278)||(20236231-20236491)
chr5 (16-132)||(23352191-23352307)
chr5 (182-277)||(34833953-34834047)
[»] chr8 (5 HSPs)
chr8 (17-281)||(23710583-23710848)
chr8 (11-278)||(753988-754256)
chr8 (16-232)||(9710356-9710572)
chr8 (16-278)||(9173786-9174034)
chr8 (16-181)||(14822461-14822627)
[»] chr1 (4 HSPs)
chr1 (16-278)||(45910465-45910727)
chr1 (16-278)||(50515252-50515514)
chr1 (16-278)||(44713153-44713415)
chr1 (28-80)||(16768014-16768066)
[»] chr7 (3 HSPs)
chr7 (22-278)||(41257413-41257669)
chr7 (16-278)||(19215449-19215710)
chr7 (200-281)||(15889273-15889354)
[»] chr2 (4 HSPs)
chr2 (16-278)||(38619165-38619427)
chr2 (16-278)||(17312582-17312844)
chr2 (31-281)||(9635368-9635619)
chr2 (28-73)||(26262694-26262739)
[»] chr3 (3 HSPs)
chr3 (16-281)||(54586320-54586586)
chr3 (17-281)||(6162099-6162364)
chr3 (16-278)||(52972499-52972762)
[»] chr6 (2 HSPs)
chr6 (16-281)||(18459815-18460085)
chr6 (28-119)||(24133346-24133437)


Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 281
Target Start/End: Original strand, 38965566 - 38965831
Alignment:
Q  16 catcaagggggattaacatcatcatttttgtctaaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttgatcat 115  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38965566 catcaagggggattaacatcatcattttcgtctgaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttgatcat 38965665  T
Q  116 gtcatatggtatgtactgactgttccggaaaacgaattccggactacattcatgcattctggatttcgaaatctggactacactagtacagaaactgtgt 215  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  38965666 gtcatatgatatgtactgactgttccggaaaacgaattccggactacattcatgcattctggatttcgaaatccggactacaccagtacagaaactgtgt 38965765  T
Q  216 tcattttctgactatgcttggcactgatttcaattatggttgttccggttgatgccccaaatgatg 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38965766 tcattttctgactatgcttggcactgatttcaattatggttgttccggttgatgccccaaatgatg 38965831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 16 - 278
Target Start/End: Original strand, 25761158 - 25761420
Alignment:
Q  16 catcaagggggattaacatcatcatttttgtctaaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttgatcat 115  Q
    ||||||||||| |||||||||||||||||| || ||| |||| |||||||||||||||||||| | |||||  |||||||||| |||||||||||||||     
T  25761158 catcaaggggggttaacatcatcatttttgactgaatgcaaaggtaatgtgtatataaacctttccccattgattttttaggctattttcttttgatcac 25761257  T
Q  116 gtcatatggtatgtactg-actgttccggaaaacgaattccggactacattcatgcattctggatttcgaaatctggactacactagtacagaaactgtg 214  Q
    |||||||| ||||||||| ||  |||||||  | | | ||| ||||  |||||||| ||| ||| ||||||||| ||||| ||| |||||| ||||||||    
T  25761258 gtcatatgatatgtactgtacctttccggactatgcaatccagactggattcatgcgttccggagttcgaaatccggactgcaccagtacaaaaactgtg 25761357  T
Q  215 ttcattttctgactatgcttggcactgatttcaattatggttgttccggttgatgccccaaatg 278  Q
    |||||||||||||||||| | |||||| |||||  |||||||||||||||||||||||||||||    
T  25761358 ttcattttctgactatgcct-gcactgttttcagatatggttgttccggttgatgccccaaatg 25761420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 16 - 278
Target Start/End: Complemental strand, 13851034 - 13850771
Alignment:
Q  16 catcaaggggga-ttaacatcatcatttttgtctaaattcaaatgtaatgtgtatataaacc-ttcctccattcgttttttaggcgattttcttttgatc 113  Q
    |||||||||||  |||||||||||||||| | || ||| |||| |||||||||||||||||| |||| ||||||| |||||||||||||| |||||||||    
T  13851034 catcaagggggtgttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataaacctttcccccattcg-tttttaggcgatttccttttgatc 13850936  T
Q  114 atgtcatatggtatgtactg-actgttccggaaaacgaattccggactacattcatgcattctggatttcgaaatctggactacactagtacagaaactg 212  Q
    | |||||||| | ||||||| ||  |||||||  | | | |||| |||  |||||||  ||| ||| |||| |||| ||||| ||| |||||||||||||    
T  13850935 acgtcatatgatttgtactgtacctttccggactatgcaatccgcactggattcatggtttccggagttcgtaatccggactgcaccagtacagaaactg 13850836  T
Q  213 tgttcattttctgactatgcttggcactgatttcaattatggttgttccggttgatgccccaaatg 278  Q
    |||||||||||||||||||| | ||| || ||| |  |||||||||||| ||||||||||||||||    
T  13850835 tgttcattttctgactatgcat-gcattgtttttagatatggttgttccagttgatgccccaaatg 13850771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 16 - 278
Target Start/End: Complemental strand, 20236491 - 20236231
Alignment:
Q  16 catcaagggggattaacatcatcatttttgtctaaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttgatcat 115  Q
    ||||||||||| |||||||||||||||| | || ||| | || |||||||||||||||||||||| | ||| | |||||||||||||| ||||||||||     
T  20236491 catcaaggggggttaacatcatcattttcgactgaatgctaaggtaatgtgtatataaaccttccccgatttg-tttttaggcgatttccttttgatcac 20236393  T
Q  116 gtcatatggtatgtact-gactgttccggaaaacgaattccggactacattcatgcattctggatttcgaaatctggactacactagtacagaaactgtg 214  Q
    |||||||| |||||| |   | | ||||||    ||| |||| |||  |||||||| ||| ||||||||||||| ||||| ||| |||||| ||| | ||    
T  20236392 gtcatatgatatgtaatcttcagatccggactttgaaatccgaactggattcatgcgttccggatttcgaaatccggactgcaccagtacataaattatg 20236293  T
Q  215 ttcattttctgactatgcttggcactgatttcaattatggttgttccggttgatgccccaaatg 278  Q
    |||||||||||||||||| | |||||| |||||  ||| |||| ||||||||||||||||||||    
T  20236292 ttcattttctgactatgcct-gcactgttttcagatat-gttgctccggttgatgccccaaatg 20236231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 23352307 - 23352191
Alignment:
Q  16 catcaagggggattaacatcatcatttttgtctaaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttgatcat 115  Q
    ||||||||| | |||||||||||||||| | || ||| |||| |||||||||||||||||||| | ||||||||||||||||| |||| ||||||||||     
T  23352307 catcaagggcggttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataaacctttccccattcgttttttaggcaatttccttttgatcac 23352208  T
Q  116 gtcatatggtatgtact 132  Q
    |||||||| ||||||||    
T  23352207 gtcatatgatatgtact 23352191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 277
Target Start/End: Complemental strand, 34834047 - 34833953
Alignment:
Q  182 cgaaatctggactacactagtacagaaactgtgttcattttctgactatgcttggcactgatttcaattatggttgttccggttgatgccccaaat 277  Q
    |||||||  |||| ||| ||||||||||||||||||||||||||||||| | | |||||| |||||  ||||||||||||| ||||||||||||||    
T  34834047 cgaaatccagactgcaccagtacagaaactgtgttcattttctgactatacat-gcactgttttcagatatggttgttccgattgatgccccaaat 34833953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 281
Target Start/End: Complemental strand, 23710848 - 23710583
Alignment:
Q  17 atcaagggggattaacatcatcatttttgtctaaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttgatcatg 116  Q
    |||||||||| |||||||||||||||| |||| ||| |||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |    
T  23710848 atcaaggggggttaacatcatcattttcgtctgaatgcaaaggtaatgtgtatataaaccttcccccattcgttttttaggcgatttccttttgatcacg 23710749  T
Q  117 tcatatggtatgtactg-actgttccggaaaacgaattccggactacattcatgcattctggatttcgaaatctggactacactagtacagaaactgtgt 215  Q
    ||||||| ||||||||| |  ||||| ||| | ||| | |||||| ||||||||| ||| |||||||||| ||| |||| ||| |||||| ||||| |||    
T  23710748 tcatatgatatgtactgtaacgttccagaatatgaaattcggactgcattcatgcgttccggatttcgaattctagactgcaccagtacataaactatgt 23710649  T
Q  216 tcattttctgactatgcttggcactgatttcaattatggttgttccggttgatgccccaaatgatg 281  Q
    ||||||||||||||||| || ||||| ||| |  |||||||||| |||||||||||||||||||||    
T  23710648 tcattttctgactatgcatgacactgtttttagatatggttgtttcggttgatgccccaaatgatg 23710583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 11 - 278
Target Start/End: Original strand, 753988 - 754256
Alignment:
Q  11 atggacatcaagggggattaacatcatcatttttgtctaaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttg 110  Q
    |||| ||||||||||| || ||||||||||||||| || ||| ||||  ||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  753988 atggccatcaaggggggttgacatcatcatttttgactgaatgcaaagataatgtgtatataaaccttcccccattcgttttttaggcgatttccttttg 754087  T
Q  111 atcatgtcatatggtatgtactg-actgttccggaaaacgaattccggactacattcatgcattctggatttcgaaatctggactacactagtacagaaa 209  Q
    ||||  ||||||| | ||||||| || ||||| ||| | ||| |||||||| ||||||||| |||  ||||| ||||||  || | ||| || |||||||    
T  754088 atcacttcatatgatctgtactgtaccgttccagaatatgaaatccggactgcattcatgcgttccagattttgaaatccagagtgcaccagcacagaaa 754187  T
Q  210 ctgtgttcattttctgactatgcttggcactgatttcaattatggttgttccggttgatgccccaaatg 278  Q
    ||||||||||||||| ||||||| || || || ||| |  |||||||||||||||||||||||||||||    
T  754188 ctgtgttcattttctaactatgcctgtcaatgtttttagatatggttgttccggttgatgccccaaatg 754256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 9710572 - 9710356
Alignment:
Q  16 catcaagggggattaacatcatcatttttgtctaaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttgatcat 115  Q
    ||||||||||| |||||||||||||||| | || ||| |||| ||||||||||||||| |||||| |||||| |||||||||| ||||||||||||||||    
T  9710572 catcaaggggggttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataa-ccttcccccattcattttttaggcaattttcttttgatcat 9710474  T
Q  116 gtcatatggtatgtactg-actgttccggaaaacgaattccggactacattcatgcattctggatttcgaaatctggactacactagtacagaaactgtg 214  Q
    |||||||| |||| |||| ||| || ||||  ||| | ||||||||  |||||||| |||  || |||||||||  |||| ||| |||||||||||||||    
T  9710473 gtcatatgatatgcactgtactttttcggactacgcaatccggactggattcatgctttccagagttcgaaatccagactgcaccagtacagaaactgtg 9710374  T
Q  215 ttcattttctgactatgc 232  Q
    ||||||||||||||||||    
T  9710373 ttcattttctgactatgc 9710356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 16 - 278
Target Start/End: Complemental strand, 9174034 - 9173786
Alignment:
Q  16 catcaagggggattaacatcatcatttttgtctaaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttgatcat 115  Q
    |||||| |||| |||||||||||||||||| || ||| |||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||     
T  9174034 catcaaagggggttaacatcatcatttttgactgaatgcaaaggtaatgtgtatataaaccttcccccattcgttttttaggagattttcttttgatcac 9173935  T
Q  116 gtcatatggtatgtactgactgttccggaaaacgaattccggactacattcatgcattctggatttcgaaatctggactacactagtacagaaactgtgt 215  Q
    |||||||| | |||    ||| | ||||         ||||||||  |||||||| ||| ||||||| |||||  |||| ||| |||||||||||| |||    
T  9173934 gtcatatgatctgt----actctaccgg---------tccggactggattcatgcgttccggatttcaaaatccagactgcaccagtacagaaactatgt 9173848  T
Q  216 tcattttctgactatgcttggcactgatttcaattatggttgttccggttgatgccccaaatg 278  Q
    ||||||||||||||||| | |||||| |||||  |||||||| ||||||||||  ||||||||    
T  9173847 tcattttctgactatgcct-gcactgttttcagatatggttgctccggttgatatcccaaatg 9173786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 16 - 181
Target Start/End: Original strand, 14822461 - 14822627
Alignment:
Q  16 catcaagggggattaacatcatcatttttgtctaaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttgatcat 115  Q
    ||||||||||| |||||||||||||||||||||||||  ||| |||||||||||||||||||||| |||||||  ||||| ||||||| ||||| ||||     
T  14822461 catcaaggggggttaacatcatcatttttgtctaaatgtaaaggtaatgtgtatataaaccttcccccattcgaattttaagcgatttccttttaatcac 14822560  T
Q  116 gtcatatggtatgtact-gactgttccggaaaacgaattccggactacattcatgcattctggattt 181  Q
     ||||||| |  ||||| ||   ||||||||||  || |||||||| |||||||||||| |||||||    
T  14822561 atcatatgatccgtactggaacattccggaaaattaaatccggactgcattcatgcattttggattt 14822627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 278
Target Start/End: Complemental strand, 45910727 - 45910465
Alignment:
Q  16 catcaagggggattaacatcatcatttttgtctaaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttgatcat 115  Q
    ||||||||||| ||| |||||||||||||| || ||| |||| ||||||| |||||||||||| | |||||| ||||||||| ||||| |||||||||||    
T  45910727 catcaaggggggttagcatcatcatttttgactgaatgcaaaggtaatgtatatataaacctttccccattcattttttaggtgatttccttttgatcat 45910628  T
Q  116 gtcatatggtatgtactg-actgttccggaaaacgaattccggactacattcatgcattctggatttcgaaatctggactacactagtacagaaactgtg 214  Q
    |||||||| | ||||||| ||  |||||||  | | | ||||||||  |||||||| ||||||| ||||||||  ||||| ||| |||||||||||||||    
T  45910627 gtcatatgatctgtactgtacctttccggactatgcaatccggactggattcatgcgttctggagttcgaaattcggactgcaccagtacagaaactgtg 45910528  T
Q  215 ttcattttctgactatgcttggcactgatttcaattatggttgttccggttgatgccccaaatg 278  Q
    |||||||||||||||||| | |||||| |||||  |||||||||||||||| ||||||||||||    
T  45910527 ttcattttctgactatgcct-gcactgttttcagatatggttgttccggttaatgccccaaatg 45910465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 278
Target Start/End: Original strand, 50515252 - 50515514
Alignment:
Q  16 catcaagggggattaacatcatcatttttgtctaaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttgatcat 115  Q
    ||||||||||| |||||||||||||||| | || ||| |||| |||||||||||||||||||| | ||||| |||||||||||||||| ||||||||||     
T  50515252 catcaaggggggttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataaacctttccccatttgttttttaggcgatttccttttgatcac 50515351  T
Q  116 gtcatatggtatgtactg-actgttccggaaaacgaattccggactacattcatgcattctggatttcgaaatctggactacactagtacagaaactgtg 214  Q
    |||||||| | ||||||| ||  |||||||  | | | ||||||||  |||||||| ||| ||| ||||||||| ||||||||| |||||| ||||||||    
T  50515352 gtcatatgatctgtactgtacctttccggactatgcaatccggactggattcatgctttccggaattcgaaatccggactacaccagtacaaaaactgtg 50515451  T
Q  215 ttcattttctgactatgcttggcactgatttcaattatggttgttccggttgatgccccaaatg 278  Q
    |||||||| ||||||||| | |||||| |||||  ||||||||||||||||||| |||||||||    
T  50515452 ttcattttttgactatgcat-gcactgttttcatatatggttgttccggttgataccccaaatg 50515514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 16 - 278
Target Start/End: Complemental strand, 44713415 - 44713153
Alignment:
Q  16 catcaagggggattaacatcatcatttttgtctaaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttgatcat 115  Q
    ||||||||||| |||||||||||||||| |  | ||| |||| |||||||||||||||||||| | |||||||||||||||||||||| ||||||||||     
T  44713415 catcaaggggggttaacatcatcattttcggttgaatgcaaaggtaatgtgtatataaacctttccccattcgttttttaggcgatttccttttgatcac 44713316  T
Q  116 gtcatatggtatgtactg-actgttccggaaaacgaattccggactacattcatgcattctggatttcgaaatctggactacactagtacagaaactgtg 214  Q
    |||||||| | ||||||| ||  |||||||  | | | || |||||| |||||||||||| ||| || |||||  ||||| ||| |||||| ||||||||    
T  44713315 gtcatatgatctgtactgtacctttccggactatgcaatctggactagattcatgcattccggagttagaaattaggactgcaccagtacaaaaactgtg 44713216  T
Q  215 ttcattttctgactatgcttggcactgatttcaattatggttgttccggttgatgccccaaatg 278  Q
    |||||||||||||||||| | ||| || |||||  |||||||||||||||||||||||||||||    
T  44713215 ttcattttctgactatgcct-gcattgttttcagatatggttgttccggttgatgccccaaatg 44713153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 16768066 - 16768014
Alignment:
Q  28 ttaacatcatcatttttgtctaaattcaaatgtaatgtgtatataaaccttcc 80  Q
    |||||||||||||| | | || ||| |||| ||||||||||||||||||||||    
T  16768066 ttaacatcatcattctcgactgaatgcaaaggtaatgtgtatataaaccttcc 16768014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 22 - 278
Target Start/End: Complemental strand, 41257669 - 41257413
Alignment:
Q  22 gggggattaacatcatcatttttgtctaaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttgatcatgtcata 121  Q
    ||||| |||||||||||||||| | || ||| |||| |||||||||||||||||||| | |||||||||||||||||||||| |||||||||| ||||||    
T  41257669 ggggggttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataaacctttccccattcgttttttaggcgatttccttttgatcacgtcata 41257570  T
Q  122 tggtatgtactg-actgttccggaaaacgaattccggactacattcatgcattctggatttcgaaatctggactacactagtacagaaactgtgttcatt 220  Q
    || ||||||||| ||  || ||||  | | | || ||| |  |||||||| ||||||||||||||||| ||||| ||| ||||||||||||||||| |||    
T  41257569 tgatatgtactgtaccttttcggactatgcaatctggattggattcatgcgttctggatttcgaaatccggactgcaccagtacagaaactgtgtttatt 41257470  T
Q  221 ttctgactatgcttggcactgatttcaattatggttgttccggttgatgccccaaatg 278  Q
    |||||||||||| | |||||| |||||  ||||||||||||| |||||||||||||||    
T  41257469 ttctgactatgcct-gcactgttttcagatatggttgttccgattgatgccccaaatg 41257413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 16 - 278
Target Start/End: Original strand, 19215449 - 19215710
Alignment:
Q  16 catcaagggggattaacatcatcatttttgtctaaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttgatcat 115  Q
    ||||||||||| |||||||||||||||| | || ||| |||| |||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||     
T  19215449 catcaaggggggttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataaaccttcccccattagttttttaggcaattttcttttgatcac 19215548  T
Q  116 gtcatatggtatgtactg-actgttccggaaaacgaattccggactacattcatgcattctggatttcgaaatctggactacactagtacagaaactgtg 214  Q
    |||||||| | |||| || ||  ||| |||  | | | ||||||||  |||||||| ||| ||| ||||||||||| ||| ||  |||||||||||||||    
T  19215549 gtcatatgatctgtattgtacctttcaggactatgcaatccggactggattcatgcgttccggagttcgaaatctgaactgcatcagtacagaaactgtg 19215648  T
Q  215 ttcattttctgactatgcttggcactgatttcaattatggttgttccggttgatgccccaaatg 278  Q
     ||||||||||||||||| | |||||| |||||  | |||||||||||||||||||||||||||    
T  19215649 -tcattttctgactatgcct-gcactgttttcagatgtggttgttccggttgatgccccaaatg 19215710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 200 - 281
Target Start/End: Original strand, 15889273 - 15889354
Alignment:
Q  200 agtacagaaactgtgttcattttctgactatgcttggcactgatttcaattatggttgttccggttgatgccccaaatgatg 281  Q
    |||||||||||| ||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  15889273 agtacagaaactatgttcattttctgactaagcttggcactgttttcagttatggttgttccggttgatgccccaaatgatg 15889354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 7e-52; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 16 - 278
Target Start/End: Original strand, 38619165 - 38619427
Alignment:
Q  16 catcaagggggattaacatcatcatttttgtctaaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttgatcat 115  Q
    ||||||||||| |||||||||||||||| | || ||| |||| |||||||||||||||||||| | | ||| |||||||||||||||| ||||||||||     
T  38619165 catcaaggggggttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataaacctttcccaatttgttttttaggcgatttccttttgatcac 38619264  T
Q  116 gtcatatggtatgtactg-actgttccggaaaacgaattccggactacattcatgcattctggatttcgaaatctggactacactagtacagaaactgtg 214  Q
    |||||||| | ||||||| ||  |||||||  | | | ||||||||  |||||||| || ||||||||||||||| |||| ||| |||||||||||||||    
T  38619265 gtcatatgatctgtactgtacctttccggactatgcaatccggactggattcatgcgttatggatttcgaaatctagactgcaccagtacagaaactgtg 38619364  T
Q  215 ttcattttctgactatgcttggcactgatttcaattatggttgttccggttgatgccccaaatg 278  Q
    |||||||| ||||||||| | | |||| |||||  ||||||||||||| |||||||| ||||||    
T  38619365 ttcattttttgactatgcct-gtactgttttcagatatggttgttccgattgatgcctcaaatg 38619427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 16 - 278
Target Start/End: Complemental strand, 17312844 - 17312582
Alignment:
Q  16 catcaagggggattaacatcatcatttttgtctaaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttgatcat 115  Q
    |||||| |||| |||||||||||||||| | || ||| |||| |||||||||||||||||||||  |||||||||||||||||||||| ||||||||||     
T  17312844 catcaaagggggttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataaaccttctcccattcgttttttaggcgatttccttttgatcac 17312745  T
Q  116 gtcatatggtatgtactg-actgttccggaaaacgaattccggactacattcatgcattctggatttcgaaatctggactacactagtacagaaactgtg 214  Q
    |||||||| | ||||||  || | ||| ||    ||| |||| |||   |||| |  ||   |||||||||||| ||||| ||| |||||||||||||||    
T  17312744 gtcatatgatttgtactctaccggtccagactctgaaatccgaactgggttcacgtgtttcagatttcgaaatccggactgcaccagtacagaaactgtg 17312645  T
Q  215 ttcattttctgactatgcttggcactgatttcaattatggttgttccggttgatgccccaaatg 278  Q
    |||||||||||||||||||| |||||| |||||  ||||||||||| |||||||||||||||||    
T  17312644 ttcattttctgactatgctt-gcactgttttcagatatggttgttctggttgatgccccaaatg 17312582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 31 - 281
Target Start/End: Original strand, 9635368 - 9635619
Alignment:
Q  31 acatcatcatttttgtctaaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttgatcatgtcatatggtatgta 130  Q
    |||||||||||||  ||| | | ||||  |||||||||||||||||||||   ||| |  ||||||||| ||| |||||||||| |||||||| | ||||    
T  9635368 acatcatcattttcatctgagtgcaaagataatgtgtatataaaccttcccttatttgaattttaggcgctttccttttgatcacgtcatatgatctgta 9635467  T
Q  131 ctg-actgttccggaaaacgaattccggactacattcatgcattctggatttcgaaatctggactacactagtacagaaactgtgttcattttctgacta 229  Q
    ||| |    | || ||||  || || ||||| ||||||||||||   |||||   |||| | || |||| |||||| |||||||| ||||||||||| |     
T  9635468 ctggagcaatacgaaaaataaaatctggactgcattcatgcatttcagattttttaatccgaacaacaccagtacaaaaactgtgctcattttctgagtc 9635567  T
Q  230 tgcttggcactgatttcaattatggttgttccggttgatgccccaaatgatg 281  Q
    ||||| |||||| ||||| ||||||||||||| |||||||||||||||||||    
T  9635568 tgcttcgcactgttttcagttatggttgttcctgttgatgccccaaatgatg 9635619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 26262694 - 26262739
Alignment:
Q  28 ttaacatcatcatttttgtctaaattcaaatgtaatgtgtatataa 73  Q
    |||||| |||||||||||||| ||| |||| |||||||||||||||    
T  26262694 ttaacaacatcatttttgtctgaatgcaaaggtaatgtgtatataa 26262739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 16 - 281
Target Start/End: Original strand, 54586320 - 54586586
Alignment:
Q  16 catcaagggggattaacatcatcatttttgtctaaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttgatcat 115  Q
    ||||||||||| |||||||||||||||| |||| ||| |||| ||| ||||||||||||  |||  ||||||||||||||||| |||| ||||||||||     
T  54586320 catcaaggggggttaacatcatcattttcgtctgaatgcaaaggtagtgtgtatataaaatttctcccattcgttttttaggcaatttccttttgatcac 54586419  T
Q  116 gtcatatggtatgtact-gactgttccggaaaacgaattccggactacattcatgcattctggatttcgaaatctggactacactagtacagaaactgtg 214  Q
    |||||| | | |||||| || |  |||| ||||  ||||| ||||| |||||||   ||  |||||| | |||| | || |||| |||||| ||| | ||    
T  54586420 gtcatacgatctgtactggatttatccgaaaaataaattcgggactgcattcatatgtttaggatttagtaatccgaacaacaccagtacaaaaattatg 54586519  T
Q  215 ttcattttctgactatgcttggcactgatttcaattatggttgttccggttgatgccccaaatgatg 281  Q
    |||||||||||||| ||||| ||| || ||||| |||||||||||||||||||||||||||||||||    
T  54586520 ttcattttctgactctgcttcgcattgttttcagttatggttgttccggttgatgccccaaatgatg 54586586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 17 - 281
Target Start/End: Complemental strand, 6162364 - 6162099
Alignment:
Q  17 atcaagggggattaacatcatcatttttgtctaaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttgatcatg 116  Q
    |||||||||| |||||||||||||||| |||| ||| |||| |||||||||||||||||||| | | | ||| |||||||||||||  |||||||||| |    
T  6162364 atcaaggggggttaacatcatcattttcgtctgaatgcaaaggtaatgtgtatataaacctttccctagtcgatttttaggcgattaacttttgatcacg 6162265  T
Q  117 tcatatggtatgtactg-actgttccggaaaacgaattccggactacattcatgcattctggatttcgaaatctggactacactagtacagaaactgtgt 215  Q
    |  |||| |||  | || ||||||||||||    || ||||| || ||||||||| |||||||||||| | || |||   ||| ||| ||||||||||||    
T  6162264 ttgtatgatattcattgtactgttccggaatgttaaatccggtctgcattcatgcgttctggatttcggattccggagagcaccagtgcagaaactgtgt 6162165  T
Q  216 tcattttctgactatgcttggcactgatttcaattatggttgttccggttgatgccccaaatgatg 281  Q
    ||||||||||||| | ||| |||||| ||||| | ||||||||||| |||||| ||| ||||||||    
T  6162164 tcattttctgactctacttcgcactgttttcagtcatggttgttcctgttgatcccctaaatgatg 6162099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 278
Target Start/End: Complemental strand, 52972762 - 52972499
Alignment:
Q  16 catcaagggggattaacatcatcatttttgtctaaattcaaatgtaatgtgtatataaacctt-cctccattcgttttttaggcgattttcttttgatca 114  Q
    ||||||||||| |||||||||||||||| | || ||| |||| ||||||||| |||||||||| || ||||||||||||||||||||||  |||||||||    
T  52972762 catcaaggggggttaacatcatcattttcgactgaatgcaaaggtaatgtgtgtataaaccttccccccattcgttttttaggcgatttctttttgatca 52972663  T
Q  115 tgtcatatggtatgtact-gac-tgttccggaaaacgaattccggactacattcatgcattctggatttcgaaatctggactacactagtacagaaactg 212  Q
     |||||||| | ||||||  || |||| ||||     || || |||||  |||||||| ||| |||||| |||||||||||| ||| | |||||||||||    
T  52972662 cgtcatatgatttgtactctacatgtt-cggactgtaaaatctggactggattcatgcgttccggattttgaaatctggactgcaccaatacagaaactg 52972564  T
Q  213 tgttcattttctgactatgcttggcactgatttcaattatggttgttccggttgatgccccaaatg 278  Q
    ||||||||||||||||||| |  |||||| || ||  ||||||||||  |||||||||||||||||    
T  52972563 tgttcattttctgactatg-tctgcactgtttacagatatggttgttttggttgatgccccaaatg 52972499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 281
Target Start/End: Complemental strand, 18460085 - 18459815
Alignment:
Q  16 catcaagggggattaacatcatcatttttgtctaaattcaaatgtaatgtgtat---ataaaccttcctccattcg-ttttttaggcgattttcttttga 111  Q
    ||||||||| | |||||||||||||||| | || ||| |||| |||||||||||   ||||||||||| ||||| | |||||| |||||||| |||||||    
T  18460085 catcaagggaggttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataataaaccttcccccatttgttttttttggcgatttccttttga 18459986  T
Q  112 tcatgtcatatggtatgtactg-actgttccggaaaacgaattccggactacattcatgcattctggatttcgaaatctggactacactagtacagaaac 210  Q
    ||| |||||||| | ||||||| |  |||| ||||    || |||||||| ||||||||| ||| |||||| ||| |  |||    || ||| |||||||    
T  18459985 tcacgtcatatgatctgtactgaaacgttctggaatttcaaatccggactgcattcatgcgttccggattttgaatttcggatagaaccagtgcagaaac 18459886  T
Q  211 tgtgttcattttctgactatgcttggcactgatttcaattatggttgttccggttgatgccccaaatgatg 281  Q
    ||||||||| || ||||| ||||| |||||| ||||| | ||||||||||| |||||||||||| ||||||    
T  18459885 tgtgttcatcttttgactctgcttcgcactgctttcagtcatggttgttcctgttgatgccccacatgatg 18459815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 28 - 119
Target Start/End: Complemental strand, 24133437 - 24133346
Alignment:
Q  28 ttaacatcatcatttttgtctaaattcaaatgtaatgtgtatataaaccttcctccattcgttttttaggcgattttcttttgatcatgtca 119  Q
    |||||||||||||||| | || |||||||| ||||||||||||||||||||||  |||||| ||| |||||| ||| |||||||||||||||    
T  24133437 ttaacatcatcattttcgactgaattcaaaggtaatgtgtatataaaccttccctcattcgatttctaggcgctttccttttgatcatgtca 24133346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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