View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6978_low_50 (Length: 251)
Name: NF6978_low_50
Description: NF6978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6978_low_50 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 3 - 243
Target Start/End: Complemental strand, 40804418 - 40804178
Alignment:
| Q |
3 |
tgaagaaacaaagatattaaagggtcgtcattgtcaagaaattgatatgtattgttccctttattaggcttgaaacaccaatgatttatgaccagtcact |
102 |
Q |
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| T |
40804418 |
tgaagaaacaaagatattaaagggtcgtcattgtcaagaaattgatatgtattgttccctttattaggcttgaaacaccaatgatttatgaccagtcgct |
40804319 |
T |
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| Q |
103 |
tatctttcctcttaaaaacttgagttgagtcaataattgattaagcattaatgactgagtttaaatatgttctttgactgtgttgagattcaaatatatt |
202 |
Q |
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| T |
40804318 |
tatctttcctcttaaaaacttgagttgagtcaataattgattaagcattaatgactgagtttaaatatgttctttgactgtgttgagattcaaatatatt |
40804219 |
T |
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| Q |
203 |
accaattatgtttctcttttgttttaatcccttgatgatgt |
243 |
Q |
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| T |
40804218 |
accaattatgtttctcttttgttttagtcccttgatgatgt |
40804178 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 5115901 - 5115847
Alignment:
| Q |
30 |
tcattgtcaagaaattgatatgtattgttccctttattaggcttgaaacaccaat |
84 |
Q |
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| T |
5115901 |
tcattgtcaagaaaatgatatgtcttgttcctgttattgggcttgaaacaccaat |
5115847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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